ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ585989.1| Triticum aestivum partial mRNA for cytochrome P4... 54 3e-04
2ref|NM_202617.1| Arabidopsis thaliana S-adenosylmethionine-depen... 48 0.019
3ref|NM_112956.3| Arabidopsis thaliana S-adenosylmethionine-depen... 48 0.019
4emb|AJ585991.1| Triticum aestivum partial mRNA for cytochrome P4... 48 0.019
5emb|AJ585990.1| Triticum aestivum partial mRNA for cytochrome P4... 48 0.019
6emb|AJ585988.1| Triticum aestivum partial mRNA for cytochrome P4... 48 0.019
7gb|BT006067.1| Arabidopsis thaliana clone U20104 unknown protein... 48 0.019
8emb|BX822732.1|CNS0A74C Arabidopsis thaliana Full-length cDNA Co... 48 0.019
9emb|BX823608.1|CNS0A6NR Arabidopsis thaliana Full-length cDNA Co... 48 0.019
10gb|BT005804.1| Arabidopsis thaliana clone RAFL14-85-K11 (R20104)... 48 0.019
11dbj|AP002034.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 48 0.019
12ref|XM_538287.2| PREDICTED: Canis familiaris similar to Thyrotro... 44 0.29
13emb|AL365264.13| Human DNA sequence from clone RP11-287H7 on chr... 44 0.29
14gb|AE009858.1|AE009858 Pyrobaculum aerophilum strain IM2 section... 44 0.29
15gb|AE009809.1|AE009809 Pyrobaculum aerophilum strain IM2 section... 44 0.29
16gb|AC109195.27| Mus musculus chromosome 15, clone RP24-212B11, c... 42 1.1
17gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 1.1
18ref|XM_538275.2| PREDICTED: Canis familiaris similar to solute c... 42 1.1
19gb|AC098744.3| Mus musculus BAC clone RP23-122P15 from 8, comple... 42 1.1
20gb|AC123039.3| Mus musculus BAC clone RP24-531I15 from 8, comple... 42 1.1
21emb|CR693854.2|CNS0FYBU Tetraodon nigroviridis full-length cDNA 42 1.1
22ref|XM_795025.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 1.1
23ref|XM_692270.1| PREDICTED: Danio rerio similar to bicaudal D ho... 42 1.1
24tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 42 1.1
25emb|X97257.1|PRVULGNS Suid herpesvirus 1 strain Kaplan UL[5,6,7,... 42 1.1
26emb|AJ937764.1| Uncultured Chloroflexi bacterium fosmid clone b1... 42 1.1
27dbj|AP004524.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.1
28gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 m... 40 4.5
29ref|XM_480203.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
30gb|AC107843.10| Mus musculus chromosome 1, clone RP23-306B14, co... 40 4.5
31gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 40 4.5
32gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.5
33gb|AC102124.16| Mus musculus chromosome 18, clone RP23-188D1, co... 40 4.5
34gb|AC102658.9| Mus musculus chromosome 1, clone RP23-82B23, comp... 40 4.5
35gb|AC131656.3| Mus musculus BAC clone RP23-233K19 from chromosom... 40 4.5
36ref|XM_858780.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 4.5
37ref|XM_858759.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 4.5
38ref|XM_858739.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 4.5
39ref|XM_858718.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 4.5
40ref|XM_858693.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 4.5
41ref|XM_858604.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 4.5
42ref|XM_540916.2| PREDICTED: Canis familiaris similar to neural s... 40 4.5
43ref|XM_570947.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 4.5
44gb|AC125132.4| Mus musculus BAC clone RP24-314B3 from chromosome... 40 4.5
45gb|AC122296.4| Mus musculus BAC clone RP23-265P8 from 6, complet... 40 4.5
46gb|AC125354.4| Mus musculus BAC clone RP23-302B8 from 8, complet... 40 4.5
47gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosom... 40 4.5
48gb|AC163899.3| Mus musculus chromosome 1, clone RP24-383F13, com... 40 4.5
49emb|AL358472.54| Human DNA sequence from clone RP11-422P24 on ch... 40 4.5
50emb|AL356278.8| Human DNA sequence from clone RP11-515J24 on chr... 40 4.5
51gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 4.5
52gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 4.5
53gb|AC091672.11| Papio anubis clone rp41-367l20, complete sequence 40 4.5
54dbj|AK131648.1| Mus musculus adult male cerebellum cDNA, RIKEN f... 40 4.5
55gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 4.5
56gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 4.5
57dbj|AK041094.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 4.5
58gb|BC096484.1| Mus musculus cDNA clone IMAGE:5293208 40 4.5
59dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
60gb|AY968215.1| Rubella virus strain RVI/Anhui.CHN/00 structural ... 40 4.5
61gb|AY968213.1| Rubella virus strain RVI/SHANDONG.CHN/00 structur... 40 4.5
62ref|XM_215848.3| PREDICTED: Rattus norvegicus similar to chromos... 40 4.5
63emb|AJ583532.1| Triticum aestivum mRNA for cytochrome P450 (CYP9... 40 4.5
64dbj|BS000163.1| Pan troglodytes chromosome 22 clone:RP43-010B02,... 40 4.5
65emb|BX648453.1|HSM808601 Homo sapiens mRNA; cDNA DKFZp686I20269 ... 40 4.5
66emb|AL732429.11| Mouse DNA sequence from clone RP23-89N11 on chr... 40 4.5
67dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
68dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
69dbj|AK102356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
70gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 4.5
71emb|CT476832.2| Pig DNA sequence from clone XX-BE284E13 on chrom... 40 4.5
72emb|AL954712.9| Mouse DNA sequence from clone RP23-241M12 on chr... 40 4.5
73gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 40 4.5
74gb|AC122127.31| Mus musculus chromosome 1, clone RP24-401K1, com... 40 4.5
75gb|AC171328.2| Mus musculus chromosome 1, clone wi1-817D1, compl... 40 4.5 
>emb|AJ585989.1| Triticum aestivum partial mRNA for cytochrome P450-like protein
          Length = 1515

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 159 ctccctccggggccgtgcccgtggccggtggtagg 193
           ||||| ||||| |||||||||||||||||||||||
Sbjct: 85  ctcccgccgggcccgtgcccgtggccggtggtagg 119
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>ref|NM_202617.1| Arabidopsis thaliana S-adenosylmethionine-dependent
           methyltransferase/ catalytic AT3G20650 transcript
           variant AT3G20650.2 mRNA, complete cds
          Length = 1486

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 71  gctctgctcctcctccttcttcca 94
           ||||||||||||||||||||||||
Sbjct: 121 gctctgctcctcctccttcttcca 144
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>ref|NM_112956.3| Arabidopsis thaliana S-adenosylmethionine-dependent
           methyltransferase/ catalytic AT3G20650 transcript
           variant AT3G20650.1 mRNA, complete cds
          Length = 1543

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 71  gctctgctcctcctccttcttcca 94
           ||||||||||||||||||||||||
Sbjct: 121 gctctgctcctcctccttcttcca 144
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>emb|AJ585991.1| Triticum aestivum partial mRNA for cytochrome P450-like protein
          Length = 1532

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 159 ctccctccggggccgtgcccgtggccggtggt 190
           ||||| ||||| ||||||||||||||||||||
Sbjct: 85  ctcccaccgggcccgtgcccgtggccggtggt 116
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>emb|AJ585990.1| Triticum aestivum partial mRNA for cytochrome P450-like protein
          Length = 1532

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 159 ctccctccggggccgtgcccgtggccggtggt 190
           ||||| ||||| ||||||||||||||||||||
Sbjct: 85  ctcccaccgggcccgtgcccgtggccggtggt 116
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>emb|AJ585988.1| Triticum aestivum partial mRNA for cytochrome P450-like protein
          Length = 1532

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 159 ctccctccggggccgtgcccgtggccggtggt 190
           ||||| ||||| ||||||||||||||||||||
Sbjct: 85  ctcccaccgggcccgtgcccgtggccggtggt 116
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>gb|BT006067.1| Arabidopsis thaliana clone U20104 unknown protein (At3g20650)
          mRNA, complete cds
          Length = 1144

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 71 gctctgctcctcctccttcttcca 94
          ||||||||||||||||||||||||
Sbjct: 32 gctctgctcctcctccttcttcca 55
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>emb|BX822732.1|CNS0A74C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB60ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1256

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 71  gctctgctcctcctccttcttcca 94
           ||||||||||||||||||||||||
Sbjct: 111 gctctgctcctcctccttcttcca 134
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>emb|BX823608.1|CNS0A6NR Arabidopsis thaliana Full-length cDNA Complete sequence from
          clone GSLTLS56ZC04 of Adult vegetative tissue of strain
          col-0 of Arabidopsis thaliana (thale cress)
          Length = 1416

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 71 gctctgctcctcctccttcttcca 94
          ||||||||||||||||||||||||
Sbjct: 52 gctctgctcctcctccttcttcca 75
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>gb|BT005804.1| Arabidopsis thaliana clone RAFL14-85-K11 (R20104) unknown protein
           (At3g20650) mRNA, complete cds
          Length = 1326

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 71  gctctgctcctcctccttcttcca 94
           ||||||||||||||||||||||||
Sbjct: 127 gctctgctcctcctccttcttcca 150
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>dbj|AP002034.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F3H11
          Length = 33442

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 71    gctctgctcctcctccttcttcca 94
             ||||||||||||||||||||||||
Sbjct: 17913 gctctgctcctcctccttcttcca 17890
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>ref|XM_538287.2| PREDICTED: Canis familiaris similar to Thyrotropin-releasing
           hormone degrading ectoenzyme (TRH-degrading ectoenzyme)
           (TRH-DE) (TRH-specific aminopeptidase) (Thyroliberinase)
           (Pyroglutamyl-peptidase II) (PAP-II) (LOC481166), mRNA
          Length = 585

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 165 ccggggccgtgcccgtggccgg 186
           ||||||||||||||||||||||
Sbjct: 401 ccggggccgtgcccgtggccgg 422
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>emb|AL365264.13| Human DNA sequence from clone RP11-287H7 on chromosome 1, complete
             sequence
          Length = 16665

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 246   catcaggtgatggagaagatga 267
             ||||||||||||||||||||||
Sbjct: 10261 catcaggtgatggagaagatga 10282
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>gb|AE009858.1|AE009858 Pyrobaculum aerophilum strain IM2 section 113 of 201 of the complete
            genome
          Length = 14169

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 72   ctctgctcctcctccttcttcc 93
            ||||||||||||||||||||||
Sbjct: 7103 ctctgctcctcctccttcttcc 7124
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>gb|AE009809.1|AE009809 Pyrobaculum aerophilum strain IM2 section 64 of 201 of the complete
            genome
          Length = 12278

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 72   ctctgctcctcctccttcttcc 93
            ||||||||||||||||||||||
Sbjct: 7280 ctctgctcctcctccttcttcc 7301
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>gb|AC109195.27| Mus musculus chromosome 15, clone RP24-212B11, complete sequence
          Length = 168270

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    ctctgctcctcctccttcttc 92
             |||||||||||||||||||||
Sbjct: 98640 ctctgctcctcctccttcttc 98660
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 277     tcgcctgcttccgcctcggcg 297
               |||||||||||||||||||||
Sbjct: 2434453 tcgcctgcttccgcctcggcg 2434433
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>ref|XM_538275.2| PREDICTED: Canis familiaris similar to solute carrier family 35,
           member E2 (LOC481154), mRNA
          Length = 798

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 155 ggcgctccctccggggccgtgcccg 179
           ||||||||||||||||||| |||||
Sbjct: 138 ggcgctccctccggggccgagcccg 114
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>gb|AC098744.3| Mus musculus BAC clone RP23-122P15 from 8, complete sequence
          Length = 204779

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     ctgctcctcctccttcttcca 94
              |||||||||||||||||||||
Sbjct: 172965 ctgctcctcctccttcttcca 172985
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>gb|AC123039.3| Mus musculus BAC clone RP24-531I15 from 8, complete sequence
          Length = 147370

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    ctgctcctcctccttcttcca 94
             |||||||||||||||||||||
Sbjct: 53604 ctgctcctcctccttcttcca 53624
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>emb|CR693854.2|CNS0FYBU Tetraodon nigroviridis full-length cDNA
          Length = 1505

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 68  ggggctctgctcctcctccttcttccatg 96
           ||||||||||||||||||| ||| |||||
Sbjct: 479 ggggctctgctcctcctccgtctcccatg 507
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>ref|XM_795025.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC581083 (LOC581083), mRNA
          Length = 1197

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  ctctgctcctcctccttcttc 92
           |||||||||||||||||||||
Sbjct: 755 ctctgctcctcctccttcttc 735
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>ref|XM_692270.1| PREDICTED: Danio rerio similar to bicaudal D homolog 1 isoform 1
            (LOC568909), mRNA
          Length = 3243

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 70   ggctctgctcctcctccttct 90
            |||||||||||||||||||||
Sbjct: 3218 ggctctgctcctcctccttct 3198
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   cctccggggccgtgcccgtgg 182
             |||||||||||||||||||||
Sbjct: 83777 cctccggggccgtgcccgtgg 83797
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>emb|X97257.1|PRVULGNS Suid herpesvirus 1 strain Kaplan UL[5,6,7,8,8.5,9,10,11,12,13] genes
          Length = 11059

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 162  cctccggggccgtgcccgtgg 182
            |||||||||||||||||||||
Sbjct: 5427 cctccggggccgtgcccgtgg 5447
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>emb|AJ937764.1| Uncultured Chloroflexi bacterium fosmid clone b1dcf1.3.f01
          Length = 33281

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    ccatgtggtggtgatggtggc 112
             |||||||||||||||||||||
Sbjct: 30392 ccatgtggtggtgatggtggc 30412
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>dbj|AP004524.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT08O18, TM0052a,
            complete sequence
          Length = 20200

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 72   ctctgctcctcctccttcttccatg 96
            |||| ||||||||||||||||||||
Sbjct: 4730 ctcttctcctcctccttcttccatg 4706
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>gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 map 19, complete sequence
          Length = 190697

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    agctcaagttatttaacaag 224
              ||||||||||||||||||||
Sbjct: 157651 agctcaagttatttaacaag 157632
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>ref|XM_480203.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3681

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  tctgctcctcctccttcttc 92
           ||||||||||||||||||||
Sbjct: 552 tctgctcctcctccttcttc 533
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>gb|AC107843.10| Mus musculus chromosome 1, clone RP23-306B14, complete sequence
          Length = 180315

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ctgctcctcctccttcttcc 93
             ||||||||||||||||||||
Sbjct: 66387 ctgctcctcctccttcttcc 66368
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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    ctcctcctccttcttccatg 96
             ||||||||||||||||||||
Sbjct: 26048 ctcctcctccttcttccatg 26029



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    ctcctcctccttcttccatg 96
             ||||||||||||||||||||
Sbjct: 25890 ctcctcctccttcttccatg 25871
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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
               sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      gtggtggtgatggtggccgt 115
               ||||||||||||||||||||
Sbjct: 1069970 gtggtggtgatggtggccgt 1069951
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>gb|AC102124.16| Mus musculus chromosome 18, clone RP23-188D1, complete sequence
          Length = 222450

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     ctcctcctccttcttccatg 96
              ||||||||||||||||||||
Sbjct: 196052 ctcctcctccttcttccatg 196033



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     ctcctcctccttcttccatg 96
              ||||||||||||||||||||
Sbjct: 195894 ctcctcctccttcttccatg 195875
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>gb|AC102658.9| Mus musculus chromosome 1, clone RP23-82B23, complete sequence
          Length = 186097

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 105258 tctgctcctcctccttcttc 105277
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>gb|AC131656.3| Mus musculus BAC clone RP23-233K19 from chromosome 17, complete sequence
          Length = 184763

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 102195 tctgctcctcctccttcttc 102176
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>ref|XM_858780.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 30 isoform 3, transcript variant 10
           (LOC476639), mRNA
          Length = 3682

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 cctgcttccgcctcggcggcgtcc 303
           ||||| ||||||||||||||||||
Sbjct: 167 cctgcctccgcctcggcggcgtcc 144
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>ref|XM_858759.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 30 isoform 3, transcript variant 9
           (LOC476639), mRNA
          Length = 3769

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 cctgcttccgcctcggcggcgtcc 303
           ||||| ||||||||||||||||||
Sbjct: 167 cctgcctccgcctcggcggcgtcc 144
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>ref|XM_858739.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 30 isoform 3, transcript variant 8
           (LOC476639), mRNA
          Length = 2394

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 cctgcttccgcctcggcggcgtcc 303
           ||||| ||||||||||||||||||
Sbjct: 167 cctgcctccgcctcggcggcgtcc 144
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>ref|XM_858718.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 30 isoform 3, transcript variant 7
           (LOC476639), mRNA
          Length = 1562

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 cctgcttccgcctcggcggcgtcc 303
           ||||| ||||||||||||||||||
Sbjct: 208 cctgcctccgcctcggcggcgtcc 185
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>ref|XM_858693.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 30 isoform 3, transcript variant 6
           (LOC476639), mRNA
          Length = 991

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 cctgcttccgcctcggcggcgtcc 303
           ||||| ||||||||||||||||||
Sbjct: 167 cctgcctccgcctcggcggcgtcc 144
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>ref|XM_858604.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 30 isoform 3, transcript variant 2
           (LOC476639), mRNA
          Length = 3742

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 cctgcttccgcctcggcggcgtcc 303
           ||||| ||||||||||||||||||
Sbjct: 167 cctgcctccgcctcggcggcgtcc 144
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>ref|XM_540916.2| PREDICTED: Canis familiaris similar to neural stem cell-derived
            dendrite regulator (LOC483795), mRNA
          Length = 1938

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 166  cggggccgtgcccgtggccggtgg 189
            |||||||| |||||||||||||||
Sbjct: 1903 cggggccgggcccgtggccggtgg 1880
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>ref|XM_570947.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNE03740) partial mRNA
          Length = 3332

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   gtggtggtgatggtggccgt 115
            ||||||||||||||||||||
Sbjct: 2066 gtggtggtgatggtggccgt 2047
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>gb|AC125132.4| Mus musculus BAC clone RP24-314B3 from chromosome 8, complete sequence
          Length = 190472

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     ctgctcctcctccttcttcc 93
              ||||||||||||||||||||
Sbjct: 148637 ctgctcctcctccttcttcc 148618
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>gb|AC122296.4| Mus musculus BAC clone RP23-265P8 from 6, complete sequence
          Length = 211697

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 164499 tctgctcctcctccttcttc 164480
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>gb|AC125354.4| Mus musculus BAC clone RP23-302B8 from 8, complete sequence
          Length = 159941

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     ctgctcctcctccttcttcc 93
              ||||||||||||||||||||
Sbjct: 154490 ctgctcctcctccttcttcc 154509
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>gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosome 6, complete sequence
          Length = 199100

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 177669 tctgctcctcctccttcttc 177688
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>gb|AC163899.3| Mus musculus chromosome 1, clone RP24-383F13, complete sequence
          Length = 227890

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 161283 tctgctcctcctccttcttc 161302
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>emb|AL358472.54| Human DNA sequence from clone RP11-422P24 on chromosome 1 Contains the 5'
              UTR of the gene for transcription repressor p66 beta
              component of the MeCP1 complex (P66beta), the KIAA0476 gene
              for a novel protein, the gene for transducer of regulated
              cAMP response element-binding protein (CREB) 2 (TORC2), the
              SLC39A1 gene for solute carrier family 39 (zinc
              transporter), member 1, the CREB3L4 gene for cAMP
              responsive element binding protein 3-like 4, the JTB gene
              for jumping translocation breakpoint, the RAB13 gene for
              RAB13, member RAS oncogene family, the RPS27 gene for
              ribosomal protein S27 (metallopanstimulin 1), the 3' end of
              the gene for nuclear pore membrane glycoprotein 210-like
              (LOC91181), a ribosomal protein S7 (RPS7) pseudogene and a
              CpG island, complete sequence
          Length = 175827

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 121071 tctgctcctcctccttcttc 121052
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>emb|AL356278.8| Human DNA sequence from clone RP11-515J24 on chromosome 6, complete
             sequence
          Length = 182510

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ctctgctcctcctccttctt 91
             ||||||||||||||||||||
Sbjct: 68508 ctctgctcctcctccttctt 68527
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     aagctgccggcgttccggtg 241
               ||||||||||||||||||||
Sbjct: 3799272 aagctgccggcgttccggtg 3799291
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      gtggtggtgatggtggccgt 115
               ||||||||||||||||||||
Sbjct: 3075736 gtggtggtgatggtggccgt 3075717
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>gb|AC091672.11| Papio anubis clone rp41-367l20, complete sequence
          Length = 172406

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     ggctctgctcctcctccttc 89
              ||||||||||||||||||||
Sbjct: 115448 ggctctgctcctcctccttc 115467
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>dbj|AK131648.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched
            library, clone:1520402E24 product:unclassifiable, full
            insert sequence
          Length = 2856

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   tctgctcctcctccttcttc 92
            ||||||||||||||||||||
Sbjct: 1185 tctgctcctcctccttcttc 1204
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      gtggtggtgatggtggccgt 115
               ||||||||||||||||||||
Sbjct: 3115715 gtggtggtgatggtggccgt 3115696



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 283     gcttccgcctcggcggcgtc 302
               ||||||||||||||||||||
Sbjct: 2785672 gcttccgcctcggcggcgtc 2785691
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
             genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ccggggccgtgcccgtggcc 184
             ||||||||||||||||||||
Sbjct: 92048 ccggggccgtgcccgtggcc 92067
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>dbj|AK041094.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530082K19
            product:unclassifiable, full insert sequence
          Length = 4028

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  agctcaagttatttaacaag 224
            ||||||||||||||||||||
Sbjct: 1123 agctcaagttatttaacaag 1142
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>gb|BC096484.1| Mus musculus cDNA clone IMAGE:5293208
          Length = 2529

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 gctccctccggggccgtgcc 177
           ||||||||||||||||||||
Sbjct: 15  gctccctccggggccgtgcc 34
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 73      tctgctcctcctccttcttc 92
               ||||||||||||||||||||
Sbjct: 3511837 tctgctcctcctccttcttc 3511856
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>gb|AY968215.1| Rubella virus strain RVI/Anhui.CHN/00 structural protein gene,
           complete cds
          Length = 3192

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 tggtgatggtggccgtaatg 119
           ||||||||||||||||||||
Sbjct: 989 tggtgatggtggccgtaatg 970
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>gb|AY968213.1| Rubella virus strain RVI/SHANDONG.CHN/00 structural protein gene,
           complete cds
          Length = 3192

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 tggtgatggtggccgtaatg 119
           ||||||||||||||||||||
Sbjct: 989 tggtgatggtggccgtaatg 970
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>ref|XM_215848.3| PREDICTED: Rattus norvegicus similar to chromosome 20 open reading
           frame 116 (predicted) (LOC296162), mRNA
          Length = 2170

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  gctcctcctccttcttccat 95
           ||||||||||||||||||||
Sbjct: 559 gctcctcctccttcttccat 540
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>emb|AJ583532.1| Triticum aestivum mRNA for cytochrome P450 (CYP98A12 gene)
          Length = 1774

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 ccggggccgtgcccgtggccggtg 188
           ||||||||| ||||||||||||||
Sbjct: 163 ccggggccgcgcccgtggccggtg 186
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>dbj|BS000163.1| Pan troglodytes chromosome 22 clone:RP43-010B02, map 22, complete
              sequences
          Length = 182740

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tcctccttcttccatgtggt 100
              ||||||||||||||||||||
Sbjct: 100916 tcctccttcttccatgtggt 100935
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>emb|BX648453.1|HSM808601 Homo sapiens mRNA; cDNA DKFZp686I20269 (from clone DKFZp686I20269)
          Length = 2387

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ctctgctcctcctccttctt 91
            ||||||||||||||||||||
Sbjct: 1656 ctctgctcctcctccttctt 1675
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>emb|AL732429.11| Mouse DNA sequence from clone RP23-89N11 on chromosome X, complete
              sequence
          Length = 164991

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 152681 tctgctcctcctccttcttc 152662
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0498E12
          Length = 153523

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     tctgctcctcctccttcttc 92
              ||||||||||||||||||||
Sbjct: 145256 tctgctcctcctccttcttc 145275
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    tctgctcctcctccttcttc 92
             ||||||||||||||||||||
Sbjct: 67554 tctgctcctcctccttcttc 67573
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>dbj|AK102356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091H10, full
           insert sequence
          Length = 3682

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  tctgctcctcctccttcttc 92
           ||||||||||||||||||||
Sbjct: 553 tctgctcctcctccttcttc 534
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     cggggccgtgcccgtggccg 185
               ||||||||||||||||||||
Sbjct: 1554514 cggggccgtgcccgtggccg 1554495
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>emb|CT476832.2| Pig DNA sequence from clone XX-BE284E13 on chromosome 11, complete
             sequence
          Length = 180778

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    ctgctcctcctccttcttcc 93
             ||||||||||||||||||||
Sbjct: 89940 ctgctcctcctccttcttcc 89959
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>emb|AL954712.9| Mouse DNA sequence from clone RP23-241M12 on chromosome 2, complete
             sequence
          Length = 65039

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    tctgctcctcctccttcttc 92
             ||||||||||||||||||||
Sbjct: 32817 tctgctcctcctccttcttc 32836
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>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   agctcaagttatttaacaag 224
             ||||||||||||||||||||
Sbjct: 46642 agctcaagttatttaacaag 46623
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>gb|AC122127.31| Mus musculus chromosome 1, clone RP24-401K1, complete sequence
          Length = 193324

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   atcaggtgatggagaagatg 266
             ||||||||||||||||||||
Sbjct: 64786 atcaggtgatggagaagatg 64767
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>gb|AC171328.2| Mus musculus chromosome 1, clone wi1-817D1, complete sequence
          Length = 41955

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  agctcaagttatttaacaag 224
            ||||||||||||||||||||
Sbjct: 5326 agctcaagttatttaacaag 5345


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,152,626
Number of Sequences: 3902068
Number of extensions: 3152626
Number of successful extensions: 120750
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120346
Number of HSP's gapped (non-prelim): 404
length of query: 341
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 319
effective length of database: 17,147,199,772
effective search space: 5469956727268
effective search space used: 5469956727268
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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