Clone Information

BLAST Search Result

Clone Name	bast58h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL18_ARATH (P42791) 60S ribosomal protein L18	197	9e-51
2	RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)	188	6e-48
3	RL18_HUMAN (Q07020) 60S ribosomal protein L18	147	9e-36
4	RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)	146	2e-35
5	RL18_RAT (P12001) 60S ribosomal protein L18	145	3e-35
6	RL18_MOUSE (P35980) 60S ribosomal protein L18	145	4e-35
7	RL18_ICTPU (Q90YV0) 60S ribosomal protein L18	145	6e-35
8	RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)	143	2e-34
9	RL18_ORENI (P69091) 60S ribosomal protein L18	140	1e-33
10	RL18_OREMO (P69090) 60S ribosomal protein L18	140	1e-33
11	RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)	138	7e-33
12	RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A	136	2e-32
13	RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B	135	4e-32
14	RL18_TRYBB (P50885) 60S ribosomal protein L18	119	3e-27
15	RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)	117	1e-26
16	RL18_SALSA (P24558) 60S ribosomal protein L18	92	7e-19
17	RL18E_METTH (O26145) 50S ribosomal protein L18e	43	4e-04
18	RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e	40	0.003
19	RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e	39	0.006
20	RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e	38	0.012
21	RL18E_PYRHO (O59302) 50S ribosomal protein L18e	38	0.012
22	RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e	36	0.036
23	RL18E_METJA (P54022) 50S ribosomal protein L18e	32	0.52
24	RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e	30	2.0
25	RL18E_ARCFU (O29138) 50S ribosomal protein L18e	30	2.6
26	VG54_ICHV1 (Q00158) Hypothetical gene 54 protein	30	2.6
27	FBSH_HUMAN (Q9HAH7) Probable fibrosin-1 long transcript protein	30	2.6
28	CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2	30	3.4
29	KLCB2_ECOLI (P52605) Protein klcB	30	3.4
30	FADI_ERWCT (Q6D2L6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty...	29	4.4
31	BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Ce...	29	4.4
32	SODE_HUMAN (P08294) Extracellular superoxide dismutase [Cu-Zn] p...	29	5.8
33	FADI_PHOLL (Q7N287) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty...	29	5.8
34	COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor	29	5.8
35	RL18E_METMA (Q8PW46) 50S ribosomal protein L18e	29	5.8
36	RL18E_METAC (Q8TT44) 50S ribosomal protein L18e	29	5.8
37	DIHR_ACHDO (Q16983) Diuretic hormone receptor precursor (DH-R)	29	5.8
38	ANDR_CANFA (Q9TT90) Androgen receptor (Dihydrotestosterone recep...	29	5.8
39	SYA_NITEU (Q82TF8) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...	28	7.6
40	I15RA_HUMAN (Q13261) Interleukin-15 receptor alpha chain precurs...	28	7.6
41	ARS_STRPU (P50473) Arylsulfatase precursor (EC 3.1.6.1) (AS) (Ar...	28	7.6
42	IE63_PRVKA (Q85232) Transcriptional regulator IE63 homolog (Prot...	28	9.9
43	FPG_XANOR (Q5H667) Formamidopyrimidine-DNA glycosylase (EC 3.2.2...	28	9.9
44	TRPC_METKA (Q8TVJ8) Indole-3-glycerol phosphate synthase (EC 4.1...	28	9.9
45	HDA10_RAT (Q569C4) Histone deacetylase 10 (HD10)	28	9.9
46	ETV6_MOUSE (P97360) Transcription factor ETV6 (ETS-related prote...	28	9.9
47	AGO2_DROME (Q9VUQ5) Argonaute 2 protein	28	9.9

>RL18_ARATH (P42791) 60S ribosomal protein L18|
          Length = 187

 Score =  197 bits (501), Expect = 9e-51
 Identities = 99/123 (80%), Positives = 108/123 (87%)
 Frame = +2

Query: 71  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 250
           MGIDL+AGG++K+TKRTAPKSDDVYLKL VKLYRFLVRRT S+FN VILKRLFMSK N+ 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 251 PLSMRRLVRFMDGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGECL 430
           PLS+ RLV FM GK DKIAV+VGTITDD RV+EIP MKV ALRFTE ARARI  AGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 431 TFD 439
           TFD
Sbjct: 121 TFD 123

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>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)|
          Length = 183

 Score =  188 bits (477), Expect = 6e-48
 Identities = 90/120 (75%), Positives = 105/120 (87%)
 Frame = +2

Query: 80  DLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLS 259
           DL AGG+NK+TKRT+PKS+D+YLKLLVKLYRFLVRRT S FNAVILKRLFMSK NRPPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 260 MRRLVRFMDGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGECLTFD 439
           + RL+++M GK  KI V+VG +TDD RVY++P +KV AL+FTETARARI  AGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

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>RL18_HUMAN (Q07020) 60S ribosomal protein L18|
          Length = 187

 Score =  147 bits (372), Expect = 9e-36
 Identities = 74/124 (59%), Positives = 96/124 (77%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           LS+ R++R M   G+ +K AV+VGTITDD RV E+P +KV ALR T  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 119

Query: 428 LTFD 439
           LTFD
Sbjct: 120 LTFD 123

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>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)|
          Length = 186

 Score =  146 bits (368), Expect = 2e-35
 Identities = 74/125 (59%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
 Frame = +2

Query: 71  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 250
           MGID  +    +   RTAPKSD+VYLKLLVKLY FL RRT + FN V+LK LF+SK NRP
Sbjct: 1   MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60

Query: 251 PLSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGE 424
           P+S+ R+ R +  +G A+K  V+VGT+TDD R++E P   VAALRFT  ARA+IV AGGE
Sbjct: 61  PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120

Query: 425 CLTFD 439
           C+T D
Sbjct: 121 CITLD 125

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>RL18_RAT (P12001) 60S ribosomal protein L18|
          Length = 187

 Score =  145 bits (367), Expect = 3e-35
 Identities = 72/124 (58%), Positives = 96/124 (77%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           LS+ R++R M   G+ +K AV+VGTITDD R+ E+P +KV ALR +  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 119

Query: 428 LTFD 439
           LTFD
Sbjct: 120 LTFD 123

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>RL18_MOUSE (P35980) 60S ribosomal protein L18|
          Length = 187

 Score =  145 bits (366), Expect = 4e-35
 Identities = 71/124 (57%), Positives = 96/124 (77%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           LS+ R++R M   G+ +K AV+VGT+TDD R+ E+P +KV ALR +  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 119

Query: 428 LTFD 439
           LTFD
Sbjct: 120 LTFD 123

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>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18|
          Length = 187

 Score =  145 bits (365), Expect = 6e-35
 Identities = 73/124 (58%), Positives = 95/124 (76%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           G+D +   ++++  RT PKS D+YL+LLVKLYRFL RR+ + FN V+LKRLFMSKTNRPP
Sbjct: 1   GVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           L++ RL+R M   G+ +KIAV+VGTITDD R+  IP +KV ALR T  AR RI+ AGG+ 
Sbjct: 60  LALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQV 119

Query: 428 LTFD 439
           +TFD
Sbjct: 120 MTFD 123

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>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)|
          Length = 187

 Score =  143 bits (360), Expect = 2e-34
 Identities = 71/124 (57%), Positives = 95/124 (76%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           GID +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           LSM RL+R M   G+ +K AV+VG ITDD R+++IP +KV AL+ T   R+RI+ +GG+ 
Sbjct: 60  LSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQI 119

Query: 428 LTFD 439
           +TFD
Sbjct: 120 MTFD 123

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>RL18_ORENI (P69091) 60S ribosomal protein L18|
          Length = 187

 Score =  140 bits (353), Expect = 1e-33
 Identities = 67/124 (54%), Positives = 96/124 (77%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           G+D +   ++++  R  PKS D+YL+LLVKLYRFL RR+ + FN V+L+RLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           +++ RL+R M   G+ +KIAV+VGT+TDD R+ +IP +K+ ALR T+ AR RI+ AGG+ 
Sbjct: 60  IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 119

Query: 428 LTFD 439
           +TFD
Sbjct: 120 MTFD 123

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>RL18_OREMO (P69090) 60S ribosomal protein L18|
          Length = 187

 Score =  140 bits (353), Expect = 1e-33
 Identities = 67/124 (54%), Positives = 96/124 (77%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           G+D +   ++++  R  PKS D+YL+LLVKLYRFL RR+ + FN V+L+RLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           +++ RL+R M   G+ +KIAV+VGT+TDD R+ +IP +K+ ALR T+ AR RI+ AGG+ 
Sbjct: 60  IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 119

Query: 428 LTFD 439
           +TFD
Sbjct: 120 MTFD 123

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>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)|
          Length = 187

 Score =  138 bits (347), Expect = 7e-33
 Identities = 70/124 (56%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           GID +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGEC 427
           LSM RL+R M    + +K AV+VG IT D R+++IP + V AL+ T  AR+RI+ AGG+ 
Sbjct: 60  LSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQI 119

Query: 428 LTFD 439
           +TFD
Sbjct: 120 MTFD 123

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>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A|
          Length = 187

 Score =  136 bits (343), Expect = 2e-32
 Identities = 70/127 (55%), Positives = 94/127 (74%), Gaps = 4/127 (3%)
 Frame = +2

Query: 71  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 250
           MGID +     K+++R+ P S++VYLKLLVKLYRFL RRT S+FN  ILKRLF SKTNRP
Sbjct: 1   MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRP 59

Query: 251 PLSMRRLVRFMDGKA----DKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAG 418
           P+S+ ++      K+    +K  V+VGT+TDD+R+  +P + +AALRFT++ARARI+ AG
Sbjct: 60  PISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAG 119

Query: 419 GECLTFD 439
           GE LT D
Sbjct: 120 GEVLTLD 126

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>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B|
          Length = 187

 Score =  135 bits (340), Expect = 4e-32
 Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
 Frame = +2

Query: 71  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 250
           MGID +     ++++R+ P S++VYLKLLVKLYRFL RRT S+FN  ILKRLF SKTNRP
Sbjct: 1   MGID-IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRP 59

Query: 251 PLSMRRLVRFMDGKA----DKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAG 418
           P+S+ ++      K+     K  VIVGT+TDD+R+  +P + VAALRFT++ARARI+ AG
Sbjct: 60  PISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAG 119

Query: 419 GECLTFD 439
           GE LT D
Sbjct: 120 GEVLTLD 126

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>RL18_TRYBB (P50885) 60S ribosomal protein L18|
          Length = 193

 Score =  119 bits (298), Expect = 3e-27
 Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 8/131 (6%)
 Frame = +2

Query: 71  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 250
           MG+DL    + KR  R    S + Y+KLL+KLY+FL +RT S FN +I KRL  S+ NR 
Sbjct: 1   MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRA 60

Query: 251 PLSM--------RRLVRFMDGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARI 406
           P+S+        RR V    GK   IAVIVG + DD R+  IP +++ ALRF+++AR RI
Sbjct: 61  PISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERI 120

Query: 407 VNAGGECLTFD 439
             AGGECLTFD
Sbjct: 121 TGAGGECLTFD 131

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>RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)|
          Length = 103

 Score =  117 bits (293), Expect = 1e-26
 Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
 Frame = +2

Query: 74  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 253
           G+D +   ++++ +R  PKS D+YL+LLVKL RFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 254 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPXMKVAALR 379
           LS+ R+ R M   G+  K AV+VGTITDD R  E+P +KV ALR
Sbjct: 60  LSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 103

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>RL18_SALSA (P24558) 60S ribosomal protein L18|
          Length = 179

 Score = 91.7 bits (226), Expect = 7e-19
 Identities = 50/116 (43%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
 Frame = +2

Query: 71  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRR-TKSQFNAVILKRLFMSKTNR 247
           MGI ++   +++  +   P S+D+   LLVK+YR    + + + FN V+L+RLFMS+T+R
Sbjct: 1   MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHR 57

Query: 248 PPLSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIV 409
           PP+S+ R++R M   G+ ++ AV+VGT+TDD R++EIP +KV+AL+ T   R RI+
Sbjct: 58  PPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRIL 113

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>RL18E_METTH (O26145) 50S ribosomal protein L18e|
          Length = 121

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
 Frame = +2

Query: 155 LVKLYRFLVRRTKSQFNAV---ILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 325
           L+KL R L +++  +  A+   + +RL     NR  +++ ++ R  D   D+  ++ G +
Sbjct: 12  LIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSD--EDETVLVPGKV 69

Query: 326 TDDQRVYEIPXMKVAALRFTETARARIVNAGGECLT 433
                +     ++V AL F++TAR +I  AGGECLT
Sbjct: 70  LGSGNLDH--RVQVVALSFSQTARDKIERAGGECLT 103

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>RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e|
          Length = 120

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 32/109 (29%), Positives = 55/109 (50%)
 Frame = +2

Query: 113 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGK 292
           KRT P   D  L+ L++  R      K +    I  RL   +  R  +++ R+ R+   K
Sbjct: 2   KRTGPT--DPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRY--AK 57

Query: 293 ADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGECLTFD 439
              + V+ G++    ++ +   + VAA +F+ETAR +I  AGGE +T +
Sbjct: 58  DGDMIVVPGSVLGAGKIEK--KVIVAAWKFSETARRKIEEAGGEAITIE 104

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>RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e|
          Length = 120

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
 Frame = +2

Query: 113 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILK----RLFMSKTNRPPLSMRRLVRF 280
           KRT P   +     L +L R+L R+  +++   I K    RL   +  R  +++ ++ R+
Sbjct: 2   KRTGPTDPN-----LRRLIRYL-RKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRY 55

Query: 281 MDGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGECLTFD 439
            +    ++ V+ G++    ++ +   + VAA +F+ETAR +I+ AGGE +T +
Sbjct: 56  AND--GEMIVVPGSVLGAGKLEK--KVIVAAWKFSETARRKIIEAGGEAITIE 104

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>RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e|
          Length = 121

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 28/109 (25%), Positives = 54/109 (49%)
 Frame = +2

Query: 113 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGK 292
           KRT P   D+ L+ L++  R        +    I  RL   +  R  +++ ++ R+   K
Sbjct: 3   KRTGPT--DINLRRLIRTLRKKSNEEGVKIWKDIAWRLERPRRQRAEVNISKINRYT--K 58

Query: 293 ADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGECLTFD 439
              + ++ G++    R+     + VAA +F+E AR +I+ AGGE ++ +
Sbjct: 59  EGDVVIVPGSVLGAGRLEH--KVVVAAWKFSEAARRKIIEAGGEAISIE 105

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>RL18E_PYRHO (O59302) 50S ribosomal protein L18e|
          Length = 120

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
 Frame = +2

Query: 113 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAV---ILKRLFMSKTNRPPLSMRRLVRFM 283
           KRT P   +     L +L RFL +++  +   +   +  RL   +  R  +++ ++ R+ 
Sbjct: 2   KRTGPTDPN-----LRRLIRFLKKKSNEEGVKIWKDLAWRLERPRRQRAEVNVSKINRY- 55

Query: 284 DGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGECLTFD 439
             K   + V+ G++    ++ +   + VAA +F+ETAR +I  AGGE +T +
Sbjct: 56  -AKDGDMIVVPGSVLGAGKLEK--KVIVAAWKFSETARKKITEAGGEAITIE 104

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>RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e|
          Length = 127

 Score = 36.2 bits (82), Expect = 0.036
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
 Frame = +2

Query: 155 LVKLYRFLVRRTKSQFNAVILK----RLFMSKTNRPPLSMRRLVRFMDGKA-------DK 301
           L KL R L ++   ++NA + +    RL   +  R  +++ +L    DG A       ++
Sbjct: 13  LRKLIRDL-KKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKL----DGLARRGVIQEEE 67

Query: 302 IAVIVGTITDDQRVYEIPXMKVAALRFTETARARIVNAGGECLT 433
             ++ G +  D  + +   ++VAA RF+ TAR +I  AGGECLT
Sbjct: 68  TVLVPGKVLGDGVITQ--PLRVAAWRFSRTARMKIEAAGGECLT 109

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>RL18E_METJA (P54022) 50S ribosomal protein L18e|
          Length = 121

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = +2

Query: 155 LVKLYRFLVR---RTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 325
           LVKL   L +   + +++    I +RL   +  R  +++ ++ R+   K   + ++ G +
Sbjct: 12  LVKLIEILKQESYKNQAKIWKDIARRLAKPRRRRAEVNLSKINRYT--KEGDVVLVPGKV 69

Query: 326 TDDQRVYEIPXMKVAALRFTETARARIVNAGGECLTFD 439
               ++     + VAA  F+ETA+  I  AGGE +T +
Sbjct: 70  LGAGKLEH--KVVVAAFAFSETAKKLIKEAGGEAITIE 105

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>RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e|
          Length = 120

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 365 VAALRFTETARARIVNAGGECLTFD 439
           VAA  F+ETA++ I   GG+CLT +
Sbjct: 80  VAAFSFSETAKSAIEAVGGKCLTIE 104

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>RL18E_ARCFU (O29138) 50S ribosomal protein L18e|
          Length = 117

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 18/76 (23%), Positives = 41/76 (53%)
 Frame = +2

Query: 212 ILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTITDDQRVYEIPXMKVAALRFTET 391
           + +RL   +  +  +++ ++ ++   K ++  V+ G +     + +   +KVAAL F+E 
Sbjct: 30  VAERLAKPRRLQAEVNVSKIEKY--AKPNEYVVVPGKVLGSGSITK--PVKVAALSFSEK 85

Query: 392 ARARIVNAGGECLTFD 439
           A ++I  AGG C+  +
Sbjct: 86  AASKIREAGGVCMKIE 101

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>VG54_ICHV1 (Q00158) Hypothetical gene 54 protein|
          Length = 607

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 155 LVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRF---MDGKADKIAVI 313
           L+ + RF +   ++ F   I +R+FM   +  P +   + +F   MD  ADK A++
Sbjct: 321 LLGIIRFFIACLRAGFRGTIFRRIFMRYLDDDPSTRETVTKFMGAMDTAADKYALL 376

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>FBSH_HUMAN (Q9HAH7) Probable fibrosin-1 long transcript protein|
          Length = 372

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 145 PQAARQALPLPGAEDQEPVQRRDPEAALHEQDK 243
           P+AAR     PG++ + PV+RR+P     E+D+
Sbjct: 153 PEAART----PGSDKERPVERREPSITKEEKDR 181

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>CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2|
          Length = 580

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +1

Query: 148 QAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVHGWEGGQDRCDRGHHH 327
           +A R+ALP   AE    ++ RDPEA    + + +  LD           G +  D  H  
Sbjct: 261 EAVRRALP---AEFVAEIEGRDPEARKRRKMESSYGLD-----------GYEAPDEVHFA 306

Query: 328 R*PEGLRDTGHEGGRAQVHRDGEGQD 405
           R  + +   G  G   Q+  +G G++
Sbjct: 307 RGAQAVNPVGRRGFEDQLMLEGGGEE 332

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>KLCB2_ECOLI (P52605) Protein klcB|
          Length = 461

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 115 AHGAQVGRCVPQAARQALPLPGAEDQEPV-QRRDPEAALHEQDKPAAALDAP 267
           AH A + R    +A+  L    A+ QEP  QRR+P      + +PA   DAP
Sbjct: 328 AHQAFIARKWAASAKAKLAAARAKAQEPAGQRREPVTPAKPEPEPAKDEDAP 379

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>FADI_ERWCT (Q6D2L6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty acid|
           oxidation complex beta subunit) (Beta-ketothiolase)
           (Acetyl-CoA acyltransferase) (Acyl-CoA ligase) (ACSs)
          Length = 437

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 337 LVIGDGAHDHSDLVRLPIHEPDEAAHRERRPVCLAHEEPLQDHGVELALGPPHQEAVELD 158
           L +GD A   +    +   E DE AHR  +    A E  +    V  A  PP+++A+  D
Sbjct: 182 LRMGDTAEQMAKTYGITREEQDELAHRSHKLAAQAWESGVLRDEVMTAYVPPYEKALSED 241

Query: 157 EQL 149
             +
Sbjct: 242 NNV 244

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>BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Cellulose|
           synthase regulatory subunit) (Cellulose synthase protein
           B) (CDGBP)
          Length = 802

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +1

Query: 115 AHGAQVGRCVPQAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPP 270
           A GAQ     P A++   P P   D  P+    P+AA      PAAA  APP
Sbjct: 13  ATGAQAA---PVASKAPAPQPAGSDLPPLPAAPPQAA-----PPAAASAAPP 56

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>SODE_HUMAN (P08294) Extracellular superoxide dismutase [Cu-Zn] precursor (EC|
           1.15.1.1) (EC-SOD)
          Length = 240

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 190 QEPVQRRDPEAALHE--QDKPAAALDAPPRQVHG 285
           QE +QRRD +  LH   Q +P+A LDA   +V G
Sbjct: 47  QEVMQRRDDDGTLHAACQVQPSATLDAAQPRVTG 80

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>FADI_PHOLL (Q7N287) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty acid|
           oxidation complex beta subunit) (Beta-ketothiolase)
           (Acetyl-CoA acyltransferase) (Acyl-CoA ligase) (ACSs)
          Length = 436

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -1

Query: 337 LVIGDGAHDHSDLVRLPIHEPDEAAHRERRPVCLAHEEPLQDHGVELALGPPHQEAVELD 158
           L +GD A   +   R+   + D  AHR       A E+ L    V  A  PP++EA+  D
Sbjct: 182 LRMGDTAEQMAKTYRISREDQDALAHRSHILAAKAWEQGLLVDEVMTAHFPPYREALLED 241

Query: 157 EQLEVHIVRLGRRALGP 107
             +  + V      L P
Sbjct: 242 NNIRKNSVLTSYAKLRP 258

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>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 208 GVELALGPPHQEAVELDEQLEVHIVRLGRRALGPLVAAAGDEVDTHG 68
           G+ LA G  H+ AV +  Q    IV   +R   PL  +A   +DTHG
Sbjct: 141 GLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHG 187

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>RL18E_METMA (Q8PW46) 50S ribosomal protein L18e|
          Length = 126

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 365 VAALRFTETARARIVNAGGECLTFD 439
           VAA+ F+E+A  +I  AGG+CL+ +
Sbjct: 86  VAAVTFSESAVEKITEAGGKCLSVE 110

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>RL18E_METAC (Q8TT44) 50S ribosomal protein L18e|
          Length = 126

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 365 VAALRFTETARARIVNAGGECLTFD 439
           +AAL F+++A  +I  AGG+CL+ +
Sbjct: 86  IAALTFSDSAFEKITEAGGKCLSLE 110

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>DIHR_ACHDO (Q16983) Diuretic hormone receptor precursor (DH-R)|
          Length = 441

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +1

Query: 103 QEDQAHGAQVGRCVPQAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVH 282
           + D    A+      QA     P         +QR+    AL E D P AA DAP R   
Sbjct: 6   EADALEAAEAAAAAAQAVAADAPTT-TPSPRTLQRQRACEALMEGDAPDAAPDAPLRCAI 64

Query: 283 GWEG 294
            W+G
Sbjct: 65  AWDG 68

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>ANDR_CANFA (Q9TT90) Androgen receptor (Dihydrotestosterone receptor)|
          Length = 907

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 148 QAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVHGWEGGQD 303
           Q+ R+ +  PG    E V    P A L +Q +     +  PRQ    + G D
Sbjct: 28  QSVREVIQNPGPRHPEAVSAAPPGAHLQQQQQQQQQQETSPRQQQQQQQGDD 79

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>SYA_NITEU (Q82TF8) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 863

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -1

Query: 241 CLAHEEPLQDHGVELALGPPHQEAVELDEQLEVH---IVRLGRRALGPLVAAAGDEVDT 74
           C    E   DHG  +A GPP  E  E D  +E+     ++  R A G L       VDT
Sbjct: 168 CGPCSEIFYDHGPAVAGGPPGSENAEGDRYIEIWNLVFMQYNRDASGELHPLPKPSVDT 226

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>I15RA_HUMAN (Q13261) Interleukin-15 receptor alpha chain precursor|
           (IL-15R-alpha) (IL-15RA)
          Length = 267

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -2

Query: 129 LGAVRLVLLLRPPATRSIPMVP 64
           L A+ L+LLLRPPATR I   P
Sbjct: 14  LPALLLLLLLRPPATRGITCPP 35

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>ARS_STRPU (P50473) Arylsulfatase precursor (EC 3.1.6.1) (AS) (Aryl-sulfate|
           sulphohydrolase) (ARS)
          Length = 567

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 361 EGGRAQVHRDGEGQDCQRWWRVPYL 435
           EGG A V R G+GQ  +   R+PY+
Sbjct: 333 EGGDANVFRGGKGQSWEGGHRIPYI 357

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>IE63_PRVKA (Q85232) Transcriptional regulator IE63 homolog (Protein UL54)|
          Length = 361

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 148 QAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPP 270
           +AARQAL     + Q+  +++  +    E D+P    DAPP
Sbjct: 54  RAARQALRQRRRQQQQQQRQQQHQRRRQEADRPDGGPDAPP 94

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>FPG_XANOR (Q5H667) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)|
           (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic
           site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM)
          Length = 270

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -1

Query: 319 AHDHSDLVR-----LPIHEPDEAAHRERRPVCLAHEEPLQDHGVELALGP-PHQEAVELD 158
           AHDH D+       L  ++P       RR  CL  +  +Q H +  ALGP P  EA   D
Sbjct: 90  AHDHVDISLQNGRVLRFNDP-------RRFGCLLWQSDIQAHELLAALGPEPLSEAFTGD 142

Query: 157 EQLEVHIVRLGRRA 116
               +H +  GRRA
Sbjct: 143 ---YLHALAYGRRA 153

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>TRPC_METKA (Q8TVJ8) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 254

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -1

Query: 364 LHXRYLVDPLVIGDGAHDHSDLVRLPIHEPDEAAHRER-RPVCLAHEEPLQDHGVELALG 188
           L   +++DP+ + + AH  +D V +       A  RE    + LAHE     HG+E+ L 
Sbjct: 105 LRKDFIIDPVQVEESAHYGADAVLIIA----AAVGREAPELIDLAHE-----HGMEVLLE 155

Query: 187 PPHQEAVELDEQLEVHIVRLGRRALGPL 104
               E +EL  + +  +V +  R L  L
Sbjct: 156 IDRWEHLELLSECDPDVVGVNNRDLRTL 183

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>HDA10_RAT (Q569C4) Histone deacetylase 10 (HD10)|
          Length = 588

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 274 DEAAHRERRPVCLAHEEPLQDHGVELALGPPHQEAVELDEQLE 146
           D   HR   P+C+A    +    ++L  G  HQE   L E+ E
Sbjct: 339 DRPCHRPTPPICIAVALAVSGAALDLPPGVLHQEGSALREETE 381

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>ETV6_MOUSE (P97360) Transcription factor ETV6 (ETS-related protein Tel1) (Tel)|
           (ETS translocation variant 6)
          Length = 485

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 349 LVDPLVIGDGAHDHSDLVRLPIHEPDEAAHRERRPVCLAHEEPLQD-HGVELALGPPHQE 173
           ++ PL++    H HS   +   H  D   +RE +P+ L+H E L   + + +++ PP + 
Sbjct: 267 IMHPLILNP-RHSHSVDFKQSRHSED-GMNREGKPINLSHREDLAYLNHIMVSMSPPEEH 324

Query: 172 AVEL 161
           A+ +
Sbjct: 325 AMPI 328

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>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 25/87 (28%), Positives = 36/87 (41%)
 Frame = +1

Query: 112 QAHGAQVGRCVPQAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVHGWE 291
           Q  G Q GR   +   Q  P PG +     Q R  +   ++Q  P        +Q  G E
Sbjct: 233 QQGGHQQGRQGQEGGYQQRP-PGQQQGGHQQGRQGQEGGYQQRPPG-------QQQGGHE 284

Query: 292 GGQDRCDRGHHHR*PEGLRDTGHEGGR 372
            G+   + G+  R P G +  GH+ GR
Sbjct: 285 QGRQGQEGGYQQR-PSGQQQGGHQQGR 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,251,326
Number of Sequences: 219361
Number of extensions: 1008985
Number of successful extensions: 3705
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3687
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result