ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58g12 |
|---|---|
| Clone Library Name | barley_pub |
>NF2L1_MOUSE (Q61985) Nuclear factor erythroid 2-related factor 1 (NF-E2-related| factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) Length = 741 Score = 33.1 bits (74), Expect = 0.16 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Frame = +1 Query: 163 GGTNSTDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVA--------ARASY 318 G ++S+ S+ S A +S ++ + DS + L V R SY Sbjct: 466 GSSSSSSSSSSSSASSSASSSFSEEGAVGYSSDSETLDLEEAEGAVGYQPEYSKFCRMSY 525 Query: 319 QDPSLPSSVPYVTARVFASSHTY 387 QDPS S +PY+ +HTY Sbjct: 526 QDPSQLSCLPYL--EHVGHNHTY 546
>DP87_DICDI (Q04503) Prespore protein DP87 precursor| Length = 555 Score = 30.8 bits (68), Expect = 0.81 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = +1 Query: 163 GGTNSTDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLPSS 342 GGT + S + A +SA S + SA+ S PS++A ++ S S PSS Sbjct: 465 GGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSS 524 Query: 343 VPYVTARVFASS 378 ASS Sbjct: 525 ASSSAPSSSASS 536
>NCAP_SENDA (Q9DUE3) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 524 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 217 PASATDSDGRAWDGDSASKSLPSTNAG 297 P + TD D R W GDS + ST++G Sbjct: 430 PEAHTDQDARGWGGDSGDRWARSTSSG 456
>NF2L1_HUMAN (Q14494) Nuclear factor erythroid 2-related factor 1 (NF-E2-related| factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) (Transcription factor 11) (Transcription factor HBZ17) (Transcription factor LCR-F1) (Locus co Length = 772 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%) Frame = +1 Query: 163 GGTNSTDSAGQVRLSCGAPASATDSDGRA--WDGDSASKSLPSTNAGVA--------ARA 312 G ++S+ S+ S + AS++ S+ A + DS + L V R Sbjct: 495 GSSSSSSSSSSSSSSASSSASSSFSEEGAVGYSSDSETLDLEEAEGAVGYQPEYSKFCRM 554 Query: 313 SYQDPSLPSSVPYVTARVFASSHTY 387 SYQDP+ S +PY+ +HTY Sbjct: 555 SYQDPAQLSCLPYL--EHVGHNHTY 577
>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis| thaliana envelope membrane integrase) (Ath4) (ALBINO3-like protein 1) Length = 1013 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +1 Query: 184 SAGQVRLSCGAPASATDSDGRAWDGDS 264 +A + + CG+ +S D+D R W GD+ Sbjct: 25 NAADISIDCGSSSSHIDADNRTWVGDT 51
>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) Length = 1585 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -2 Query: 293 AFVDGKDLDAESPSHARPSESVAEAGAPQLRRTCPAESVEL 171 A G D P H + +ES+ A A + TCP S EL Sbjct: 20 AIARGPDRPDPPPQHQQAAESLVNAAAQHVAPTCPPTSDEL 60
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = +1 Query: 163 GGTNSTDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLPSS 342 G T+ + + G S + +SA S G SA+ S PS++A ++ +S S PSS Sbjct: 424 GSTSDSSALGSTSESSASGSSAVSSSA---SGSSAASSSPSSSAASSSPSSSAASSSPSS 480 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +1 Query: 163 GGTNSTDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLPSS 342 G T+ + ++G +S A S+ S + SA+ S PS++A ++ +S S PSS Sbjct: 433 GSTSESSASGSSAVSSSASGSSAASSSPS---SSAASSSPSSSAASSSPSSSAASSSPSS 489
>LAC1_BOTCI (Q12570) Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase)| (Urishiol oxidase) (Diphenol oxidase) (Fragment) Length = 486 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +1 Query: 205 SCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLPSSVPYVTARVFASS 378 +C +A + G S+S + P+T + V A S D L S VP+V ASS Sbjct: 221 ACSGNTNAANITGILRYTGSSSTADPTTTSTVTASTSCLDEPLASLVPFVPINPIASS 278
>CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 718 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/66 (25%), Positives = 29/66 (43%) Frame = +1 Query: 175 STDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLPSSVPYV 354 +T + G V G P + DGR + + +T AA S++D + ++P V Sbjct: 530 TTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVYFGTTAVTGAAITSWEDTQIKVTIPSV 589 Query: 355 TARVFA 372 A +A Sbjct: 590 AAGNYA 595
>CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 718 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/66 (25%), Positives = 29/66 (43%) Frame = +1 Query: 175 STDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLPSSVPYV 354 +T + G V G P + DGR + + +T AA S++D + ++P V Sbjct: 530 TTPTIGHVGPVMGKPGNVVTIDGRGFGSTKGTVYFGTTAVTGAAITSWEDTQIKVTIPSV 589 Query: 355 TARVFA 372 A +A Sbjct: 590 AAGNYA 595
>YOQ5_CAEEL (P34643) Hypothetical protein ZK512.5| Length = 1232 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 302 ATPAFVDGKDLDAESPSHARPSESVAEAGAPQLRR 198 A+P G D DA S +H+RP S + PQ RR Sbjct: 33 ASPPSSRGGDDDASSVNHSRPRRSRLDNDIPQPRR 67
>FUCK_SALTI (Q8Z428) L-fuculokinase (EC 2.7.1.51) (L-fuculose kinase)| Length = 472 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Frame = +1 Query: 166 GTNSTDSAGQVRLSCGAPASATDSDGR-AWDGDSASKSLPSTNAG----VAARASYQDPS 330 GT TD+A + L G P + + D + A G A + P ++G + R+ D S Sbjct: 218 GTLQTDAARLLGLPAGVPVISAEHDTQFALFGAGAQQGEPVLSSGTWEILMVRSGQVDTS 277 Query: 331 LPSSVPYVTARVFASSHTY 387 L S P T + + S Y Sbjct: 278 LLSQYPGSTCELDSQSGLY 296
>SYT_THET8 (P56881) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 659 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 279 AVDERRRRGPCLVSRPLAAFLR-ALRDGARVRVEP 380 AV RRR+ L + PLAAFL ALR+ R+EP Sbjct: 623 AVSVRRRKKGNLGTMPLAAFLEGALREYRERRLEP 657
>SYT_THET2 (Q72HH1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 659 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +3 Query: 279 AVDERRRRGPCLVSRPLAAFLR-ALRDGARVRVEP 380 AV RRR+ L + PLAAFL ALR+ R+EP Sbjct: 623 AVSVRRRKKGNLGTMPLAAFLEGALREYRERRLEP 657
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 211 GAPASATDSDGRAWDGDSASKS----LPSTNAGVAARASYQDPSLPSSVPYV 354 G PA +S G A +GD A+K LP N G+ A P LP+ P+V Sbjct: 1277 GGPAGVANSTGGAQNGDPAAKKFRPILPRQN-GMPELA----PKLPTLAPFV 1323
>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)| Length = 1755 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +1 Query: 163 GGTNS--TDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLP 336 GGT++ T+ +G V S G PASA+ + DG S+S T V Q P+ P Sbjct: 548 GGTDAVITNVSGSVS-SAGRPASASPAPNANADGTKTSRSSVETTPSVIQHVG-QPPATP 605 Query: 337 S 339 + Sbjct: 606 A 606
>NCAP_SENDO (O57286) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 524 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 217 PASATDSDGRAWDGDSASKSLPSTNAG 297 P + TD D R W GDS + S +G Sbjct: 430 PEAHTDQDARGWGGDSGDRWARSMGSG 456
>PAR3_CAEEL (Q17353) Partitioning defective protein 3 (Abnormal embryonic| partitioning of cytoplasm protein 3) Length = 1379 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 211 GAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQD 324 G+ ASATD GR+ + + ST AA+ Y D Sbjct: 1278 GSSASATDRRGRSTSSGAVASGSSSTGFQYAAKEKYAD 1315
>CDGT1_PAEMA (P04830) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 714 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/62 (22%), Positives = 29/62 (46%) Frame = +1 Query: 175 STDSAGQVRLSCGAPASATDSDGRAWDGDSASKSLPSTNAGVAARASYQDPSLPSSVPYV 354 ++ + G V + G P + DGR + G + + +T + S++D + + +P V Sbjct: 525 TSPAIGNVGPTMGQPGNIVTIDGRGFGGTAGTVYFGTTAVTGSGIVSWEDTQIKAVIPKV 584 Query: 355 TA 360 A Sbjct: 585 AA 586 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.128 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,481,709 Number of Sequences: 219361 Number of extensions: 541923 Number of successful extensions: 2115 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2113 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
