>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 294     cggcggcgaaggccagcatcgagtccg 320
               |||||||||||||| ||||||||||||
Sbjct: 3456913 cggcggcgaaggccggcatcgagtccg 3456939



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 338     gagcgcgtcccggcgccggcctcg 361
               ||||||| ||||||||||||||||
Sbjct: 4184277 gagcgcgacccggcgccggcctcg 4184300

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 295     ggcggcgaaggccagcatcgag 316
               ||||||||||||||||||||||
Sbjct: 2368177 ggcggcgaaggccagcatcgag 2368156

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 389      atgcggtcgtgcctgcagctctacgc 414
                |||||||||||||||||||| |||||
Sbjct: 25269050 atgcggtcgtgcctgcagctgtacgc 25269075



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 172      ctacgtcacgccggagctctgcgcgtccgcgctctgc 208
                ||||||||| ||||||||||||  ||| |||||||||
Sbjct: 25268797 ctacgtcaccccggagctctgcaagtcagcgctctgc 25268833

>dbj|AK111139.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D12, full
           insert sequence
          Length = 956

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 389 atgcggtcgtgcctgcagctctacgc 414
           |||||||||||||||||||| |||||
Sbjct: 581 atgcggtcgtgcctgcagctgtacgc 606



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 172 ctacgtcacgccggagctctgcgcgtccgcgctctgc 208
           ||||||||| ||||||||||||  ||| |||||||||
Sbjct: 328 ctacgtcaccccggagctctgcaagtcagcgctctgc 364

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 389      atgcggtcgtgcctgcagctctacgc 414
                |||||||||||||||||||| |||||
Sbjct: 25197226 atgcggtcgtgcctgcagctgtacgc 25197251



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 172      ctacgtcacgccggagctctgcgcgtccgcgctctgc 208
                ||||||||| ||||||||||||  ||| |||||||||
Sbjct: 25196973 ctacgtcaccccggagctctgcaagtcagcgctctgc 25197009

>emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 158927

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 389   atgcggtcgtgcctgcagctctacgc 414
             |||||||||||||||||||| |||||
Sbjct: 68140 atgcggtcgtgcctgcagctgtacgc 68115



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 172   ctacgtcacgccggagctctgcgcgtccgcgctctgc 208
             ||||||||| ||||||||||||  ||| |||||||||
Sbjct: 68393 ctacgtcaccccggagctctgcaagtcagcgctctgc 68357

>gb|AC113007.11| Mus musculus chromosome 3, clone RP23-349H13, complete sequence
          Length = 180852

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   ggagctctgcgcgtccgcgc 203
             ||||||||||||||||||||
Sbjct: 54201 ggagctctgcgcgtccgcgc 54182

>ref|XM_423398.1| PREDICTED: Gallus gallus similar to cingulin (LOC425665), mRNA
          Length = 3681

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 188  ctctgcgcgtccgcgctctgcctc 211
            ||||||||||| ||||||||||||
Sbjct: 2403 ctctgcgcgtctgcgctctgcctc 2380

>emb|Y14197.2|RSY14197 Rhodobacter sphaeroides uptake hydrogenase operon
          Length = 11280

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  cggcgccggcctcggcagcg 367
            ||||||||||||||||||||
Sbjct: 6011 cggcgccggcctcggcagcg 6030

>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16
          Length = 227214

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 341   cgcgtcccggcgccggcctcggcagcgg 368
             |||||| |||||||||||||||| ||||
Sbjct: 91986 cgcgtcgcggcgccggcctcggctgcgg 92013

>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 340    gcgcgtcccggcgccggcctcggcagcggacg 371
              |||| ||||||| ||||||||||| |||||||
Sbjct: 161737 gcgcatcccggcaccggcctcggcggcggacg 161706

>gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence
          Length = 233369

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tgctctcctcatcctcgtcc 80
              ||||||||||||||||||||
Sbjct: 197830 tgctctcctcatcctcgtcc 197811

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 92       gccggcgtccacggcgcgtc 111
                ||||||||||||||||||||
Sbjct: 39405934 gccggcgtccacggcgcgtc 39405915

>gb|AE004491.1| Pseudomonas aeruginosa PAO1, section 52 of 529 of the complete genome
          Length = 10297

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   gcggccggcgtccacggcgc 108
            ||||||||||||||||||||
Sbjct: 6826 gcggccggcgtccacggcgc 6807

>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gccggcgtccacggcgcgtc 111
             ||||||||||||||||||||
Sbjct: 16458 gccggcgtccacggcgcgtc 16439

>dbj|AK070609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063C17, full
            insert sequence
          Length = 2139

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   gccggcgtccacggcgcgtc 111
            ||||||||||||||||||||
Sbjct: 1625 gccggcgtccacggcgcgtc 1606

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     cggcgccggcctcggcagcg 367
               ||||||||||||||||||||
Sbjct: 2964228 cggcgccggcctcggcagcg 2964209

>gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete sequence
          Length = 122744

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   cgccggagctctgcgcgtccgcgc 203
             |||||||||||||||| |||||||
Sbjct: 39377 cgccggagctctgcgcctccgcgc 39400


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,166,620
Number of Sequences: 3902068
Number of extensions: 3166620
Number of successful extensions: 58331
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57822
Number of HSP's gapped (non-prelim): 509
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)