ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58f10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106990.1| Zea mays PCO149295 mRNA sequence Length = 778 Score = 165 bits (83), Expect = 2e-37 Identities = 113/123 (91%) Strand = Plus / Plus Query: 288 gggggcgggtacccaggccgcggcggcggcgggtactgccggtggggctgctgcggccgc 347 |||||||| ||||| ||| ||||| ||||||| |||||| ||||||| |||||| |||| Sbjct: 247 gggggcggctaccctggcggcggccgcggcggttactgcaggtgggggtgctgcaaccgc 306 Query: 348 gggtactacggcggctgccggtgctgctcgcgcgccgacgaggtcccggagcccatgtac 407 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 gggtactatggcggctgccggtgctgctcgcgcgccgacgaggtcccggagcccatgtac 366 Query: 408 cgc 410 ||| Sbjct: 367 cgc 369 Score = 44.1 bits (22), Expect = 0.39 Identities = 33/36 (91%), Gaps = 3/36 (8%) Strand = Plus / Plus Query: 186 gccgacgtgcaggactactaccgtggcggcggcggc 221 |||||||||||||||||| ||||||||||||||| Sbjct: 169 gccgacgtgcaggactac---cgtggcggcggcggc 201
>gb|AY104712.1| Zea mays PCO072958 mRNA sequence Length = 772 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 322 actgccggtggggctgctgcggccgcgggtactacggcggctgccggtgctgctcgc 378 |||||||||||||||||||| |||||||||| | |||||||||||||||||||||| Sbjct: 352 actgccggtggggctgctgcaaccgcgggtaccatggcggctgccggtgctgctcgc 408 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ggcggcggcggctacccggg 229 |||||||||||||||||||| Sbjct: 300 ggcggcggcggctacccggg 319
>emb|Z48625.1|HVGRP2 H.vulgare mRNA for glycine rich protein Length = 433 Score = 67.9 bits (34), Expect = 3e-08 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 330 tggggctgctgcggccgcgggtactacggcggctgccggtgctgctcgcgcgccgacgag 389 |||||||||||||| | ||||||| | |||||||| ||||| ||||||| |||||| Sbjct: 100 tggggctgctgcggtcacgggtacaa---tggctgccgctgctgtgcgcgcgcggacgag 156 Query: 390 gtcccggagcccatgtaccgcgccgagg 417 ||||| ||||||||||||||||| |||| Sbjct: 157 gtccctgagcccatgtaccgcgcggagg 184
>ref|XM_466439.1| Oryza sativa (japonica cultivar-group), mRNA Length = 775 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gctgctgcggccgcgggtactacggcggctgccggtgctgctcgcgcgccgacgaggtcc 393 ||||||||||| ||| ||| |||||| ||||| |||||| || || |||||||| ||| Sbjct: 371 gctgctgcggctacggctaccgcggcggatgccgctgctgcgcgagccccgacgagatcc 430 Query: 394 cggagcccatgtaccgc 410 ||||||||||||||||| Sbjct: 431 cggagcccatgtaccgc 447 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 167 caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 226 |||||||||||| ||| || |||||||||||||||| || ||||||||||| ||||| Sbjct: 207 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 266
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gctgctgcggccgcgggtactacggcggctgccggtgctgctcgcgcgccgacgaggtcc 393 ||||||||||| ||| ||| |||||| ||||| |||||| || || |||||||| ||| Sbjct: 22646169 gctgctgcggctacggctaccgcggcggatgccgctgctgcgcgagccccgacgagatcc 22646228 Query: 394 cggagcccatgtaccgc 410 ||||||||||||||||| Sbjct: 22646229 cggagcccatgtaccgc 22646245 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 167 caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 226 |||||||||||| ||| || |||||||||||||||| || ||||||||||| ||||| Sbjct: 22646005 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 22646064 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cgcggcggcggcgggtactg 325 |||||||||||||||||||| Sbjct: 30022663 cgcggcggcggcgggtactg 30022682 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 380 cgccgacgaggtcccggagcccatgtaccgcgccgaggcg 419 |||||||||| ||||| |||||||||||| |||||||| Sbjct: 22642228 cgccgacgagaagccggaccccatgtaccgccccgaggcg 22642267
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gctgctgcggccgcgggtactacggcggctgccggtgctgctcgcgcgccgacgaggtcc 393 ||||||||||| ||| ||| |||||| ||||| |||||| || || |||||||| ||| Sbjct: 93980 gctgctgcggctacggctaccgcggcggatgccgctgctgcgcgagccccgacgagatcc 94039 Query: 394 cggagcccatgtaccgc 410 ||||||||||||||||| Sbjct: 94040 cggagcccatgtaccgc 94056 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 167 caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 226 |||||||||||| ||| || |||||||||||||||| || ||||||||||| ||||| Sbjct: 93816 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 93875 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 380 cgccgacgaggtcccggagcccatgtaccgcgccgaggcg 419 |||||||||| ||||| |||||||||||| |||||||| Sbjct: 90039 cgccgacgagaagccggaccccatgtaccgccccgaggcg 90078
>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046O12 Length = 128223 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gctgctgcggccgcgggtactacggcggctgccggtgctgctcgcgcgccgacgaggtcc 393 ||||||||||| ||| ||| |||||| ||||| |||||| || || |||||||| ||| Sbjct: 4965 gctgctgcggctacggctaccgcggcggatgccgctgctgcgcgagccccgacgagatcc 5024 Query: 394 cggagcccatgtaccgc 410 ||||||||||||||||| Sbjct: 5025 cggagcccatgtaccgc 5041 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 167 caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 226 |||||||||||| ||| || |||||||||||||||| || ||||||||||| ||||| Sbjct: 4801 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 4860 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 380 cgccgacgaggtcccggagcccatgtaccgcgccgaggcg 419 |||||||||| ||||| |||||||||||| |||||||| Sbjct: 1024 cgccgacgagaagccggaccccatgtaccgccccgaggcg 1063
>dbj|AK062460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D05, full insert sequence Length = 775 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 334 gctgctgcggccgcgggtactacggcggctgccggtgctgctcgcgcgccgacgaggtcc 393 ||||||||||| ||| ||| |||||| ||||| |||||| || || |||||||| ||| Sbjct: 371 gctgctgcggctacggctaccgcggcggatgccgctgctgcgcgagccccgacgagatcc 430 Query: 394 cggagcccatgtaccgc 410 ||||||||||||||||| Sbjct: 431 cggagcccatgtaccgc 447 Score = 48.1 bits (24), Expect = 0.025 Identities = 51/60 (85%) Strand = Plus / Plus Query: 167 caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 226 |||||||||||| ||| || |||||||||||||||| || ||||||||||| ||||| Sbjct: 207 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 266
>emb|X52580.1|HVGRP Barley grp gene for glycine rich protein Length = 1877 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 106 ttgctctcctgcttgccgctgctttcctcgtcgcctcggc 145 |||||||||||||||| |||||| |||||||||||||||| Sbjct: 856 ttgctctcctgcttgctgctgctatcctcgtcgcctcggc 895 Score = 46.1 bits (23), Expect = 0.098 Identities = 35/39 (89%) Strand = Plus / Plus Query: 360 ggctgccggtgctgctcgcgcgccgacgaggtcccggag 398 |||||||| ||||| |||||||||||||||| |||||| Sbjct: 1506 ggctgccgctgctgtgcgcgcgccgacgaggttccggag 1544 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 210 ggcggcggcggctacccgggcc 231 |||||||||||||||||||||| Sbjct: 1413 ggcggcggcggctacccgggcc 1434
>ref|NM_018753.3| Mus musculus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (Ywhab), mRNA Length = 2774 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 38 gtggcggcggcggctacccgg 18
>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster Length = 39250 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 cggctgccggtgctgctcgcg 379 ||||||||||||||||||||| Sbjct: 26674 cggctgccggtgctgctcgcg 26654
>dbj|AK144061.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530213F11 product:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, full insert sequence Length = 2496 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 100 gtggcggcggcggctacccgg 80
>dbj|AK150414.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830007B15 product:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, full insert sequence Length = 1582 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 50 gtggcggcggcggctacccgg 30
>dbj|AK151294.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830027M05 product:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, full insert sequence Length = 1582 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 50 gtggcggcggcggctacccgg 30
>dbj|AK002632.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610014N08 product:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, full insert sequence Length = 2403 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 56 gtggcggcggcggctacccgg 36
>dbj|AK083367.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920024A14 product:14-3-3 PROTEIN BETA/ALPHA (PROTEIN KINASE C INHIBITOR PROTEIN-1) (KCIP-1) homolog [Mus musculus], full insert sequence Length = 2373 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 27 gtggcggcggcggctacccgg 7
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 ccaggccgcggcggcggcggg 320 ||||||||||||||||||||| Sbjct: 41335 ccaggccgcggcggcggcggg 41315
>dbj|AK004872.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300003C17 product:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, full insert sequence Length = 2774 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 38 gtggcggcggcggctacccgg 18
>dbj|AK011389.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610014A20 product:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide, full insert sequence Length = 1575 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 38 gtggcggcggcggctacccgg 18
>emb|AL591542.20| Mouse DNA sequence from clone RP23-321M14 on chromosome 2, complete sequence Length = 197190 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 120948 gtggcggcggcggctacccgg 120928
>gb|AF058797.1|AF058797 Mus musculus 14-3-3 protein beta mRNA, complete cds Length = 1022 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gtggcggcggcggctacccgg 228 ||||||||||||||||||||| Sbjct: 36 gtggcggcggcggctacccgg 16
>gb|AY921640.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR3) mRNA, complete cds Length = 1431 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gcgcgccgacgaggtcccgg 396 |||||||||||||||||||| Sbjct: 514 gcgcgccgacgaggtcccgg 533
>ref|XM_493941.1| Oryza sativa (japonica cultivar-group), Ozsa8006 predicted mRNA Length = 2595 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gcggcggcggcgggtactgc 326 |||||||||||||||||||| Sbjct: 253 gcggcggcggcgggtactgc 234
>ref|XM_466437.1| Oryza sativa (japonica cultivar-group), mRNA Length = 696 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 380 cgccgacgaggtcccggagcccatgtaccgcgccgaggcg 419 |||||||||| ||||| |||||||||||| |||||||| Sbjct: 370 cgccgacgagaagccggaccccatgtaccgccccgaggcg 409
>ref|XM_466438.1| Oryza sativa (japonica cultivar-group), mRNA Length = 655 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 380 cgccgacgaggtcccggagcccatgtaccgcgccgaggcg 419 |||||||||| ||||| |||||||||||| |||||||| Sbjct: 332 cgccgacgagaagccggaccccatgtaccgccccgaggcg 371
>gb|AY043299.1| Aeromonas salmonicida plasmid pRAS3.2, complete sequence Length = 11823 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gctgccggtgctgctcgcgc 380 |||||||||||||||||||| Sbjct: 10221 gctgccggtgctgctcgcgc 10240
>gb|AY043298.1| Aeromonas salmonicida subsp. salmonicida plasmid pRAS3.1, complete sequence Length = 11851 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gctgccggtgctgctcgcgc 380 |||||||||||||||||||| Sbjct: 10243 gctgccggtgctgctcgcgc 10262
>gb|AY428550.1| Chlamydia suis strain R19 invasin-like protein gene, partial cds; insertion sequence IScs605, complete sequence; TetR(C) (tetR(C)), Tet(C) (tet(C)), MobE (mobE), MobD (mobD), MobC (mobC), MobB (mobB), MobA (mobA), RepA (repA), and RepC (repC) genes, complete cds; and invasin-like protein gene, partial cds Length = 13245 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gctgccggtgctgctcgcgc 380 |||||||||||||||||||| Sbjct: 10279 gctgccggtgctgctcgcgc 10260
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gctgccggtgctgctcgcgc 380 |||||||||||||||||||| Sbjct: 3339096 gctgccggtgctgctcgcgc 3339077
>ref|XM_584546.2| PREDICTED: Bos taurus similar to phosphatidylinositol 4-kinase type II, transcript variant 1 (LOC507860), mRNA Length = 2135 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cccaggccgcggcggcggcg 318 |||||||||||||||||||| Sbjct: 279 cccaggccgcggcggcggcg 298
>ref|XM_875859.1| PREDICTED: Bos taurus similar to phosphatidylinositol 4-kinase type II, transcript variant 2 (LOC507860), mRNA Length = 2153 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cccaggccgcggcggcggcg 318 |||||||||||||||||||| Sbjct: 279 cccaggccgcggcggcggcg 298
>gb|AC005158.3| Homo sapiens BAC clone GS1-250N6 from 7, complete sequence Length = 266344 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cccaggccgcggcggcggcg 318 |||||||||||||||||||| Sbjct: 110545 cccaggccgcggcggcggcg 110564
>gb|AC103576.8| Rattus norvegicus 12 BAC CH230-63N13 (Children's Hospital Oakland Research Institute) complete sequence Length = 219287 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggagcccacggccgacgtgc 195 |||||||||||||||||||| Sbjct: 203577 ggagcccacggccgacgtgc 203596
>emb|Y13383.2|BPHYPLCRD Bordetella pertussis DNA for putative pathogenicity island coding for type III secretion system and flanking house keeping genes Length = 35026 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ccctggccgcggagggggcg 294 |||||||||||||||||||| Sbjct: 30611 ccctggccgcggagggggcg 30630
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ccctggccgcggagggggcg 294 |||||||||||||||||||| Sbjct: 278936 ccctggccgcggagggggcg 278917
>emb|AJ133186.1|SOL133186 streptomyces olivaceoviridis ATCC11238 chi30 gene Length = 1199 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 caggccgcggcggcggcggg 320 |||||||||||||||||||| Sbjct: 296 caggccgcggcggcggcggg 277
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gcggctgccggtgctgctcg 377 |||||||||||||||||||| Sbjct: 3300328 gcggctgccggtgctgctcg 3300309
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gcggcggcggcgggtactgc 326 |||||||||||||||||||| Sbjct: 3540578 gcggcggcggcgggtactgc 3540559
>gb|AC146165.2| Pan troglodytes BAC clone RP43-36N14 from chromosome 7, complete sequence Length = 159324 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cccaggccgcggcggcggcg 318 |||||||||||||||||||| Sbjct: 53883 cccaggccgcggcggcggcg 53902
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cggtggggctgctgcggccg 346 |||||||||||||||||||| Sbjct: 4469836 cggtggggctgctgcggccg 4469817
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tcccgggcgcggccgcggag 258 |||||||||||||||||||| Sbjct: 2813829 tcccgggcgcggccgcggag 2813810 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 accgcgccgaggcggaggtg 425 |||||||||||||||||||| Sbjct: 1727402 accgcgccgaggcggaggtg 1727421
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cgcggcggcggcgggtactg 325 |||||||||||||||||||| Sbjct: 2260 cgcggcggcggcgggtactg 2279
>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0675A05 Length = 131972 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gcggcggcggcgggtactgc 326 |||||||||||||||||||| Sbjct: 32415 gcggcggcggcgggtactgc 32396
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 ccgcgccgaggcggaggtgc 426 |||||||||||||||||||| Sbjct: 6005489 ccgcgccgaggcggaggtgc 6005508
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cgcggcggcggcgggtactg 325 |||||||||||||||||||| Sbjct: 122939 cgcggcggcggcgggtactg 122958
>dbj|AK105378.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F02, full insert sequence Length = 655 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 380 cgccgacgaggtcccggagcccatgtaccgcgccgaggcg 419 |||||||||| ||||| |||||||||||| |||||||| Sbjct: 332 cgccgacgagaagccggaccccatgtaccgccccgaggcg 371
>dbj|AK105148.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C06, full insert sequence Length = 1050 Score = 40.1 bits (20), Expect = 6.1 Identities = 43/50 (86%), Gaps = 3/50 (6%) Strand = Plus / Plus Query: 108 gctctcctgcttgccgctgctttcctcgtcgcctcggccgaagaaactca 157 ||||||||||| || ||||||| |||||||||| |||||| ||||||| Sbjct: 448 gctctcctgctcgctgctgctt---tcgtcgcctctgccgaacaaactca 494
>dbj|AK063583.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H12, full insert sequence Length = 696 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 380 cgccgacgaggtcccggagcccatgtaccgcgccgaggcg 419 |||||||||| ||||| |||||||||||| |||||||| Sbjct: 370 cgccgacgagaagccggaccccatgtaccgccccgaggcg 409
>dbj|AK062399.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D11, full insert sequence Length = 488 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cgcggcggcggcgggtactg 325 |||||||||||||||||||| Sbjct: 83 cgcggcggcggcgggtactg 102
>gb|AC167016.5| Mus musculus chromosome 3, clone RP23-76C12, complete sequence Length = 225524 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 aactcaggccatggccaaga 171 |||||||||||||||||||| Sbjct: 148177 aactcaggccatggccaaga 148196
>gb|M57717.1|TFETFFC2 Plasmid pTF-FC2 from Thiobacillus ferrooxidans mobA, mobB, mobC, mobD, mobE genes, complete cds, ORF's 3, 5 and 8, complete cds, and merR gene, 3' end Length = 5317 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gctgccggtgctgctcgcgc 380 |||||||||||||||||||| Sbjct: 249 gctgccggtgctgctcgcgc 268 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,475,328 Number of Sequences: 3902068 Number of extensions: 4475328 Number of successful extensions: 141724 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 139595 Number of HSP's gapped (non-prelim): 2128 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
