ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UVRC_CHLCH (Q3AQX4) UvrABC system protein C (Protein uvrC) (Exci... 32 0.57
2SWC4_ASPFU (Q4WNY4) SWR1-complex protein 4 30 2.2
3MURG_XANC5 (Q3BXF2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 30 3.7

>UVRC_CHLCH (Q3AQX4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 629

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +3

Query: 249 DALGVGDKIREHHLLYERLVAFSASTGEAAAEVSLKMQGXSGPHEIRCVKRNFLLETLEN 428
           DA GV  KIRE  LL  + +  + + GE+ A + L+M        I  V    LL+   +
Sbjct: 279 DACGVIFKIREGKLLGSQRIYINNTNGESEASMQLRMLEKFYVESIEPVPDEILLQEALS 338

Query: 429 ELPEGTIR 452
           E  E T+R
Sbjct: 339 EEEEETLR 346



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>SWC4_ASPFU (Q4WNY4) SWR1-complex protein 4|
          Length = 588

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -1

Query: 352 RLTSAAASPVDAEKATSLS*SRWCSLILSPTPRASSARKALVHVLNAYPDARSVADDSST 173
           +LT A ++    + AT+L+       +L PT R     + L+H +N   DAR V++   +
Sbjct: 430 KLTQAKSNVQSQKLATALAELEIPPRLLMPTERVCKEFEKLIHSVNLLLDARKVSEKIES 489

Query: 172 TLR 164
            +R
Sbjct: 490 EIR 492



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>MURG_XANC5 (Q3BXF2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 431

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 266 GQDQGAPPALREAGGLLCIHRRGCRGSEPKDAGXKRSSRNSLREAQLPAGDAGER 430
           G   G PPA++E  GL      G R  +    G  ++S N  R AQL A +   R
Sbjct: 371 GSGDGQPPAVQERAGL------GIRNKQTHKQGSMQTSVNGDRSAQLIATNPQSR 419


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,413,869
Number of Sequences: 219361
Number of extensions: 737035
Number of successful extensions: 2166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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