ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191906.1| Oryza sativa (japonica cultivar-group), predic... 287 1e-74
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 287 1e-74
3dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic D... 287 1e-74
4dbj|AK065097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 1e-74
5ref|XM_481090.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
6ref|XM_469736.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
7gb|AC150413.2| Branchiostoma floridae clone CH302-61A17, complet... 42 1.5
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
9ref|XM_744391.1| Aspergillus fumigatus Af293 calcium/calmodulin-... 42 1.5
10gb|AC005588.1| Homo sapiens PAC clone RP5-1161G23 from 7, comple... 42 1.5
11gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic... 42 1.5
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AK058795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
16ref|XM_475933.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
17gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
18gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
19gb|BC104740.1| Homo sapiens cDNA clone IMAGE:40022310 40 5.8
20gb|BC101987.1| Homo sapiens cDNA clone IMAGE:40022313 40 5.8
21gb|BC101984.1| Homo sapiens cDNA clone IMAGE:40022314 40 5.8
22gb|BC063671.1| Homo sapiens hypothetical protein BC009233, mRNA ... 40 5.8
23gb|BC025326.1| Homo sapiens hypothetical protein BC009233, mRNA ... 40 5.8
24gb|DQ308531.1| Triticum monococcum cultivar DV92 genomic sequence 40 5.8
25emb|AL139151.13| Human DNA sequence from clone RP4-703F12 on chr... 40 5.8
26emb|AL731594.5|OSJN00234 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
27emb|AJ001294.1|CPPIPC Craterostigma plantagineum mRNA for major ... 40 5.8
28gb|AE005879.1| Caulobacter crescentus CB15 section 205 of 359 of... 40 5.8
29ref|XM_371097.4| PREDICTED: Homo sapiens similar to CG13076-PA, ... 40 5.8
30dbj|AK029771.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.8
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.8
34gb|AC154436.2| Mus musculus BAC clone RP24-192B24 from chromosom... 40 5.8
35gb|BC046361.1| Homo sapiens, clone IMAGE:5242263, mRNA 40 5.8
36dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
37dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
38gb|AC145207.2| Homo sapiens chromosome 17, clone RP11-498C9, com... 40 5.8
39emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
40emb|CT025528.10| Mouse DNA sequence from clone RP23-205O23 on ch... 40 5.8 
>ref|NM_191906.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1344

 Score =  287 bits (145), Expect = 1e-74
 Identities = 217/241 (90%)
 Strand = Plus / Plus

                                                                       
Query: 190 cgccgcccatcgtcgtcgtgggctccgccaacgcggacatctacgtcgaggtcaaccgtc 249
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct: 161 cgccgcccatcgtcgtcgtgggctccgccaacgccgacatctacgtcgaggtcgaccgcc 220

                                                                       
Query: 250 ttccgctcgtcggcgagacggttgccgcgagtgccggtcacagcctcgccggtgggaagg 309
           | ||||||||||| |||||||| || ||| | ||||| | ||||||||| || |||||||
Sbjct: 221 tcccgctcgtcggggagacggtggcggcgcgcgccggccgcagcctcgcgggcgggaagg 280

                                                                       
Query: 310 gcgccaatcaagccgcctgcggggggcggctggcgatgggacccacctacctcgtggcgc 369
           ||||||| || |||||||||||||| || || |||  ||| |||||||||||||||||||
Sbjct: 281 gcgccaaccaggccgcctgcgggggccgcctcgcggcggggcccacctacctcgtggcgc 340

                                                                       
Query: 370 gcgtgggggacgacgccaacgggcgcctcctcgagggcgcactcgcggacgccggcggcg 429
           |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 341 gcgtcggggacgacgccaacgggcggctcctcgagggcgccctcgcggacgccggcggcg 400

            
Query: 430 t 430
           |
Sbjct: 401 t 401



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 52 ctctcgaagcgcgcctccgcctcccactcgccgg 85
          ||||||| || |||||||||||||| ||||||||
Sbjct: 8  ctctcgacgctcgcctccgcctccctctcgccgg 41
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  287 bits (145), Expect = 1e-74
 Identities = 217/241 (90%)
 Strand = Plus / Plus

                                                                            
Query: 190      cgccgcccatcgtcgtcgtgggctccgccaacgcggacatctacgtcgaggtcaaccgtc 249
                |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct: 27179112 cgccgcccatcgtcgtcgtgggctccgccaacgccgacatctacgtcgaggtcgaccgcc 27179171

                                                                            
Query: 250      ttccgctcgtcggcgagacggttgccgcgagtgccggtcacagcctcgccggtgggaagg 309
                | ||||||||||| |||||||| || ||| | ||||| | ||||||||| || |||||||
Sbjct: 27179172 tcccgctcgtcggggagacggtggcggcgcgcgccggccgcagcctcgcgggcgggaagg 27179231

                                                                            
Query: 310      gcgccaatcaagccgcctgcggggggcggctggcgatgggacccacctacctcgtggcgc 369
                ||||||| || |||||||||||||| || || |||  ||| |||||||||||||||||||
Sbjct: 27179232 gcgccaaccaggccgcctgcgggggccgcctcgcggcggggcccacctacctcgtggcgc 27179291

                                                                            
Query: 370      gcgtgggggacgacgccaacgggcgcctcctcgagggcgcactcgcggacgccggcggcg 429
                |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 27179292 gcgtcggggacgacgccaacgggcggctcctcgagggcgccctcgcggacgccggcggcg 27179351

                 
Query: 430      t 430
                |
Sbjct: 27179352 t 27179352



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 52       ctctcgaagcgcgcctccgcctcccactcgccgg 85
                ||||||| || |||||||||||||| ||||||||
Sbjct: 27178959 ctctcgacgctcgcctccgcctccctctcgccgg 27178992
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>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003E08
          Length = 135014

 Score =  287 bits (145), Expect = 1e-74
 Identities = 217/241 (90%)
 Strand = Plus / Plus

                                                                         
Query: 190   cgccgcccatcgtcgtcgtgggctccgccaacgcggacatctacgtcgaggtcaaccgtc 249
             |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct: 86790 cgccgcccatcgtcgtcgtgggctccgccaacgccgacatctacgtcgaggtcgaccgcc 86849

                                                                         
Query: 250   ttccgctcgtcggcgagacggttgccgcgagtgccggtcacagcctcgccggtgggaagg 309
             | ||||||||||| |||||||| || ||| | ||||| | ||||||||| || |||||||
Sbjct: 86850 tcccgctcgtcggggagacggtggcggcgcgcgccggccgcagcctcgcgggcgggaagg 86909

                                                                         
Query: 310   gcgccaatcaagccgcctgcggggggcggctggcgatgggacccacctacctcgtggcgc 369
             ||||||| || |||||||||||||| || || |||  ||| |||||||||||||||||||
Sbjct: 86910 gcgccaaccaggccgcctgcgggggccgcctcgcggcggggcccacctacctcgtggcgc 86969

                                                                         
Query: 370   gcgtgggggacgacgccaacgggcgcctcctcgagggcgcactcgcggacgccggcggcg 429
             |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 86970 gcgtcggggacgacgccaacgggcggctcctcgagggcgccctcgcggacgccggcggcg 87029

              
Query: 430   t 430
             |
Sbjct: 87030 t 87030



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 52    ctctcgaagcgcgcctccgcctcccactcgccgg 85
             ||||||| || |||||||||||||| ||||||||
Sbjct: 86637 ctctcgacgctcgcctccgcctccctctcgccgg 86670
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>dbj|AK065097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M16, full
           insert sequence
          Length = 1483

 Score =  287 bits (145), Expect = 1e-74
 Identities = 217/241 (90%)
 Strand = Plus / Plus

                                                                       
Query: 190 cgccgcccatcgtcgtcgtgggctccgccaacgcggacatctacgtcgaggtcaaccgtc 249
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct: 220 cgccgcccatcgtcgtcgtgggctccgccaacgccgacatctacgtcgaggtcgaccgcc 279

                                                                       
Query: 250 ttccgctcgtcggcgagacggttgccgcgagtgccggtcacagcctcgccggtgggaagg 309
           | ||||||||||| |||||||| || ||| | ||||| | ||||||||| || |||||||
Sbjct: 280 tcccgctcgtcggggagacggtggcggcgcgcgccggccgcagcctcgcgggcgggaagg 339

                                                                       
Query: 310 gcgccaatcaagccgcctgcggggggcggctggcgatgggacccacctacctcgtggcgc 369
           ||||||| || |||||||||||||| || || |||  ||| |||||||||||||||||||
Sbjct: 340 gcgccaaccaggccgcctgcgggggccgcctcgcggcggggcccacctacctcgtggcgc 399

                                                                       
Query: 370 gcgtgggggacgacgccaacgggcgcctcctcgagggcgcactcgcggacgccggcggcg 429
           |||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 400 gcgtcggggacgacgccaacgggcggctcctcgagggcgccctcgcggacgccggcggcg 459

            
Query: 430 t 430
           |
Sbjct: 460 t 460



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 52  ctctcgaagcgcgcctccgcctcccactcgccgg 85
           ||||||| || |||||||||||||| ||||||||
Sbjct: 67  ctctcgacgctcgcctccgcctccctctcgccgg 100
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>ref|XM_481090.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 579

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 176 cgccgccaatgcgccgccgcc 196
           |||||||||||||||||||||
Sbjct: 396 cgccgccaatgcgccgccgcc 376
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>ref|XM_469736.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 808

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 196 ccatcgtcgtcgtgggctccg 216
           |||||||||||||||||||||
Sbjct: 194 ccatcgtcgtcgtgggctccg 214
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>gb|AC150413.2| Branchiostoma floridae clone CH302-61A17, complete sequence
          Length = 240260

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    ggtcacagcctcgccggtggg 305
              |||||||||||||||||||||
Sbjct: 124741 ggtcacagcctcgccggtggg 124761
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 196      ccatcgtcgtcgtgggctccg 216
                |||||||||||||||||||||
Sbjct: 30464607 ccatcgtcgtcgtgggctccg 30464587
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>ref|XM_744391.1| Aspergillus fumigatus Af293 calcium/calmodulin-dependent protein
            kinase (Afu2g03490) partial mRNA
          Length = 1938

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 267  acggttgccgcgagtgccggt 287
            |||||||||||||||||||||
Sbjct: 1864 acggttgccgcgagtgccggt 1844
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>gb|AC005588.1| Homo sapiens PAC clone RP5-1161G23 from 7, complete sequence
          Length = 119483

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 404   gggcgcactcgcggacgccggcggc 428
             ||||||||||| |||||||||||||
Sbjct: 99158 gggcgcactcggggacgccggcggc 99182
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>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete
             sequence
          Length = 149380

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   ccatcgtcgtcgtgggctccg 216
             |||||||||||||||||||||
Sbjct: 12408 ccatcgtcgtcgtgggctccg 12428
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 176     cgccgccaatgcgccgccgcc 196
               |||||||||||||||||||||
Sbjct: 9774118 cgccgccaatgcgccgccgcc 9774098
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 196      ccatcgtcgtcgtgggctccg 216
                |||||||||||||||||||||
Sbjct: 30556029 ccatcgtcgtcgtgggctccg 30556009
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>dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1063H10
          Length = 170453

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   cgccgccaatgcgccgccgcc 196
             |||||||||||||||||||||
Sbjct: 38050 cgccgccaatgcgccgccgcc 38030
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>dbj|AK058795.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H05, full
           insert sequence
          Length = 886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 196 ccatcgtcgtcgtgggctccg 216
           |||||||||||||||||||||
Sbjct: 292 ccatcgtcgtcgtgggctccg 312
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>ref|XM_475933.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 185  tgcgccgccgcccatcgtcgtcgt 208
            ||||||||||||| ||||||||||
Sbjct: 1236 tgcgccgccgcccttcgtcgtcgt 1213
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>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22,
              complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    cgccgccgccaatgcgccgccgcc 196
              ||||||||||||||| ||||||||
Sbjct: 112209 cgccgccgccaatgccccgccgcc 112186
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>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
             complete sequence
          Length = 127304

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   tgcgccgccgcccatcgtcgtcgt 208
             ||||||||||||| ||||||||||
Sbjct: 43890 tgcgccgccgcccttcgtcgtcgt 43913
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>gb|BC104740.1| Homo sapiens cDNA clone IMAGE:40022310
          Length = 815

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 411 ctcgcggacgccggcggcgt 430
           ||||||||||||||||||||
Sbjct: 183 ctcgcggacgccggcggcgt 202
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>gb|BC101987.1| Homo sapiens cDNA clone IMAGE:40022313
          Length = 815

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 411 ctcgcggacgccggcggcgt 430
           ||||||||||||||||||||
Sbjct: 183 ctcgcggacgccggcggcgt 202
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>gb|BC101984.1| Homo sapiens cDNA clone IMAGE:40022314
          Length = 815

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 411 ctcgcggacgccggcggcgt 430
           ||||||||||||||||||||
Sbjct: 183 ctcgcggacgccggcggcgt 202
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>gb|BC063671.1| Homo sapiens hypothetical protein BC009233, mRNA (cDNA clone
           IMAGE:3924188), partial cds
          Length = 1534

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 411 ctcgcggacgccggcggcgt 430
           ||||||||||||||||||||
Sbjct: 60  ctcgcggacgccggcggcgt 79
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>gb|BC025326.1| Homo sapiens hypothetical protein BC009233, mRNA (cDNA clone
           IMAGE:3611286), with apparent retained intron
          Length = 1546

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 411 ctcgcggacgccggcggcgt 430
           ||||||||||||||||||||
Sbjct: 69  ctcgcggacgccggcggcgt 88
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>gb|DQ308531.1| Triticum monococcum cultivar DV92 genomic sequence
          Length = 324

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 ggcgcgcgtgggggacgacg 384
           ||||||||||||||||||||
Sbjct: 198 ggcgcgcgtgggggacgacg 217
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>emb|AL139151.13| Human DNA sequence from clone RP4-703F12 on chromosome 1p34.3-36.11,
             complete sequence
          Length = 80387

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   cttctccctcaaacctacct 162
             ||||||||||||||||||||
Sbjct: 56101 cttctccctcaaacctacct 56082
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>emb|AL731594.5|OSJN00234 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032N05,
              complete sequence
          Length = 159486

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    gccgccgcccatcgtcgtcg 207
              ||||||||||||||||||||
Sbjct: 148924 gccgccgcccatcgtcgtcg 148905
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>emb|AJ001294.1|CPPIPC Craterostigma plantagineum mRNA for major intrinsic protein PIPc
          Length = 800

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 tcgccgccgccaatgcgccg 191
           ||||||||||||||||||||
Sbjct: 533 tcgccgccgccaatgcgccg 514
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>gb|AE005879.1| Caulobacter crescentus CB15 section 205 of 359 of the complete genome
          Length = 11515

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 173  cgccgccgccaatgcgccgccgcc 196
            |||||||||||| |||||||||||
Sbjct: 8834 cgccgccgccaaggcgccgccgcc 8811
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>ref|XM_371097.4| PREDICTED: Homo sapiens similar to CG13076-PA, isoform A (LOC388444),
            mRNA
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 411  ctcgcggacgccggcggcgt 430
            ||||||||||||||||||||
Sbjct: 1317 ctcgcggacgccggcggcgt 1336
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>dbj|AK029771.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930544E19 product:unclassifiable, full
           insert sequence
          Length = 3678

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  ttttctcaactcaaccccca 48
           ||||||||||||||||||||
Sbjct: 467 ttttctcaactcaaccccca 486
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     gccgccgcccatcgtcgtcg 207
               ||||||||||||||||||||
Sbjct: 4162919 gccgccgcccatcgtcgtcg 4162900
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 185      tgcgccgccgcccatcgtcgtcgt 208
                ||||||||||||| ||||||||||
Sbjct: 28516197 tgcgccgccgcccttcgtcgtcgt 28516220



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 173     cgccgccgccaatgcgccgccgcc 196
               ||||||||||||||| ||||||||
Sbjct: 2665689 cgccgccgccaatgccccgccgcc 2665666
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 321     gccgcctgcggggggcggct 340
               ||||||||||||||||||||
Sbjct: 2877791 gccgcctgcggggggcggct 2877772
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>gb|AC154436.2| Mus musculus BAC clone RP24-192B24 from chromosome 14, complete
             sequence
          Length = 180476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ttttctcaactcaaccccca 48
             ||||||||||||||||||||
Sbjct: 26535 ttttctcaactcaaccccca 26516
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>gb|BC046361.1| Homo sapiens, clone IMAGE:5242263, mRNA
          Length = 1884

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 411 ctcgcggacgccggcggcgt 430
           ||||||||||||||||||||
Sbjct: 70  ctcgcggacgccggcggcgt 89
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>dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E14, full
           insert sequence
          Length = 2157

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 173 cgccgccgccaatgcgccgccgcc 196
           ||||||||||||||| ||||||||
Sbjct: 245 cgccgccgccaatgccccgccgcc 222
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>dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I18, full
           insert sequence
          Length = 2231

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 173 cgccgccgccaatgcgccgccgcc 196
           ||||||||||||||| ||||||||
Sbjct: 311 cgccgccgccaatgccccgccgcc 288
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>gb|AC145207.2| Homo sapiens chromosome 17, clone RP11-498C9, complete sequence
          Length = 182848

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   ctcgcggacgccggcggcgt 430
             ||||||||||||||||||||
Sbjct: 58969 ctcgcggacgccggcggcgt 58950
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>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18,
            complete sequence
          Length = 132854

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  gccgccgcccatcgtcgtcg 207
            ||||||||||||||||||||
Sbjct: 5983 gccgccgcccatcgtcgtcg 5964
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>emb|CT025528.10| Mouse DNA sequence from clone RP23-205O23 on chromosome 14, complete
              sequence
          Length = 224168

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ttttctcaactcaaccccca 48
              ||||||||||||||||||||
Sbjct: 169863 ttttctcaactcaaccccca 169844


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,778,828
Number of Sequences: 3902068
Number of extensions: 2778828
Number of successful extensions: 63414
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62838
Number of HSP's gapped (non-prelim): 576
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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