>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3|
          Length = 299

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 37/134 (27%)
 Frame = -2

Query: 349 APPTEPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLT-------CSSTYPAAMSCFMA 191
           APP  PP              PP T++PT   T+  T+T        ++T P   +   A
Sbjct: 151 APPPPPPAP------------PPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTA 198

Query: 190 SA--------------TYGATGTESP---------DITGD-------HTDWSLCPW*IAG 101
           +A              TY  TGT++P         D  G        +  WS+    I+ 
Sbjct: 199 AAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQ 258

Query: 100 SDTGTVTGSSRYVV 59
           SD G+V  SS + V
Sbjct: 259 SDVGSVEASSLFRV 272

>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3|
          Length = 299

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 37/134 (27%)
 Frame = -2

Query: 349 APPTEPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLT-------CSSTYPAAMSCFMA 191
           APP  PP              PP T++PT   T+  T+T        ++T P   +   A
Sbjct: 151 APPPPPPAP------------PPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTA 198

Query: 190 SA--------------TYGATGTESP---------DITGD-------HTDWSLCPW*IAG 101
           +A              TY  TGT++P         D  G        +  WS+    I+ 
Sbjct: 199 AAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQ 258

Query: 100 SDTGTVTGSSRYVV 59
           SD G+V  SS + V
Sbjct: 259 SDVGSVEASSLFRV 272

>IQGA1_MOUSE (Q9JKF1) Ras GTPase-activating-like protein IQGAP1|
          Length = 1657

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 183 VADAMKQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHIFVN 305
           +A+A K+ +AAG        D   KW V  WV GGYH + N
Sbjct: 668 LAEAKKKRLAAG--------DNNSKW-VKHWVKGGYHYYHN 699

>CTL1_MOUSE (Q6X893) Choline transporter-like protein 1 (Solute carrier family|
           44 member 1) (CD92 antigen) (CDw92)
          Length = 653

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 343 PTEPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLTCSSTYPAAMSCFMA 191
           P+E  L   S+G   K+  P    +P FH   P  ++C + +  A+  F++
Sbjct: 145 PSEYTLTSKSSGFCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVS 195

>DSCAM_HUMAN (O60469) Down syndrome cell adhesion molecule precursor (CHD2)|
          Length = 2012

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 346  PPTEPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLTCSSTYPAAMSCFMAS 188
            PP     A +SA  +   W PP   L    + R  T+ CS  YP  +S F AS
Sbjct: 1191 PPAGVKAAAASASMVFVSWLPP---LKLNGIIRKYTVFCSHPYPTVISEFEAS 1240

>FLO5_YEAST (P38894) Flocculation protein FLO5 precursor (Flocculin-5)|
          Length = 1075

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -2

Query: 334 PPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLTCSSTYPAAMSCFMASATYGATGTESP 155
           PP+  ++ GQ T    PP T   T   T   T+T   ++    S  ++SA          
Sbjct: 755 PPVTSATTGQETASSLPPATTTKTSEQTTLVTVTSCESHVCTES--ISSAIVSTATVTVS 812

Query: 154 DITGDHTDWSLCP 116
            +T ++T W  CP
Sbjct: 813 GVTTEYTTW--CP 823

>METK_COXBU (Q83A78) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 393

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 205 SCFMASATYGATGTESPDITGDHTD 131
           S + A+ATYG  G E P+ T + TD
Sbjct: 351 SIYKATATYGHFGREEPEFTWERTD 375

>PIP_LACLA (P49022) Phage infection protein|
          Length = 901

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 99  LPAIYQGHKDQSVWSPVMSGDSVPVAPYVAD--AMKQDIAAGY---VLLHVKVDGRVKWK 263
           +P++Y     +++W P  +   +P+A Y AD  A  QD        VL ++K + ++ WK
Sbjct: 34  IPSLYAWFNIKALWDPYANTSQLPIAVYSADKPASFQDKTINIGDEVLKNLKKNHQLGWK 93

>PTK1_YEAST (P36002) Serine/threonine-protein kinase PTK1/STK1 (EC 2.7.11.1)|
          Length = 649

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 370 TVALMAKAPPTEPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLTCSSTYPAAMS 203
           T  ++A +PP  PP     A  L  +   P  QL T  L+     T + + P+A S
Sbjct: 570 TATVLASSPPPPPPATHVPAEALFTLRETPPPQLATLTLSEEPPATPAPSAPSAPS 625

>APBB2_MOUSE (Q9DBR4) Amyloid beta A4 precursor protein-binding family B member|
           2
          Length = 760

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 18  NDRVGIYYKTLHAFTTYRDEPVTVPVSLPAIYQGHKDQSVWSPVMSGDSVP 170
           ND  G YY  +   TT  + PV++P  L    +G       SP    +  P
Sbjct: 300 NDIAGTYYWHIPTGTTQWERPVSIPADLHGSRKGSLSSVTPSPTPENEKQP 350

>OLEO2_ARATH (Q39165) Oleosin 21.2 kDa (Oleosin type 2)|
          Length = 199

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 271 LPTFHLTRPSTLTCSSTYPAAMSCFMASATYGATGTES 158
           LP F L  P  +  + T   AM+ F+AS  +G TG  S
Sbjct: 86  LPLFLLFSPVIVPAALTIGLAMTGFLASGMFGLTGLSS 123

>AROE_HALSA (Q9HS68) Shikimate dehydrogenase (EC 1.1.1.25)|
          Length = 266

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +3

Query: 48  LHAFTTYRDEPVTVPVSLPAIYQGHKDQSVWSPVMSGDSVPVAPYVADAMKQDIAAGYVL 227
           +HA T   D+P T PVS  A+   H D +V   V S     +    A A    I   ++L
Sbjct: 181 VHATTVGMDDPDTSPVSADAL---HDDLAVLDAVYSPVETRLLRDAAAAGATTIDGAWML 237

Query: 228 LHVKVDGRVKW 260
           L+   +   +W
Sbjct: 238 LYQGAEAFERW 248

>D2_DICDI (P18142) cAMP-regulated D2 protein precursor|
          Length = 535

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 132 SVWSPVMSGDSVPVAPYVA 188
           ++WSPV+ GD +P+ P  A
Sbjct: 301 TIWSPVIDGDIIPMQPLTA 319

>QUIA_ACIAD (Q59086) Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone]|
           (EC 1.1.99.25) (NAD(P)-independent quinate
           dehydrogenase)
          Length = 809

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +3

Query: 141 SPVMSGDSVPVAPYVADAMKQDIAAGYVLLHVKVDGRVKW 260
           +P ++G ++ V   +AD +  D+  G +  +  + G+++W
Sbjct: 351 APTIAGTTIVVGSRIADNVAADMPGGVIRAYDVITGKLRW 390

>CTL1_RAT (Q8VII6) Choline transporter-like protein 1 (Solute carrier family|
           44 member 1) (CD92 antigen) (CDw92)
          Length = 656

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 343 PTEPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLTCSSTYPAAMSCFMA 191
           P+E  L   S+    K+  P    +P FH   P  ++C + +  A+  F++
Sbjct: 145 PSEYTLTAKSSAFCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVS 195

>TOLR_PSEAE (P50599) Protein tolR|
          Length = 146

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 135 VWSPVMS-GDSVPVAPYVADAMKQDIAAGYVLLHVKVDGRVKWKVGSWV 278
           V +P+++ G  V +    ++A+ QD     + L VK DG   W VGS V
Sbjct: 32  VTAPMLNQGVKVDLPKVSSEALPQDNNKQVLTLSVKADGSYYWNVGSEV 80

>TAI12_HUMAN (Q9H175) TGF-beta-induced apoptosis protein 12 (TAIP-12)|
          Length = 543

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
 Frame = -2

Query: 337 EPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLTCSSTYPAAMSCFMASATYGATGT-- 164
           EP   E SA        P E  L  F L   S + CSST PAA    +  +  G T T  
Sbjct: 433 EPGTEEGSASF------PKEKDLNVFSLPVTSLVACSSTDPAA----LCKSEVGKTPTLE 482

Query: 163 ---------ESPDITGDHTDWS 125
                    E P+    H  WS
Sbjct: 483 ALLPEDCNPEEPENEDFHPSWS 504

>EFG2_BDEBA (Q6MP77) Elongation factor G 2 (EF-G 2)|
          Length = 702

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 99  LPAIYQGHKDQSVWSPVMSGDSVPVAPYVADAMKQDIAAGYVLLHV 236
           +PA+ +G K+Q+V  P++    V V   + D    D+ + Y+   +
Sbjct: 541 IPAVEEGFKEQTVKGPLIGFPIVGVEVVLEDGAYHDVDSSYMAFKI 586

>ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7|
          Length = 920

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 286 PPETQLPTFHLTRPSTLTCSSTYPAAMSCFMASATYGATGT 164
           P    LPT H  RPST    +   AAM+   A+AT  AT T
Sbjct: 128 PAGLGLPT-HAARPSTDFTQAAAAAAMAAAAATATATATAT 167

>Y1536_PSEAE (Q9I3H7) Hypothetical UPF0167 protein PA1536|
          Length = 179

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -2

Query: 271 LPTFHLTRPSTLTCSSTYPAAMSCFMASATYGATGTESPDITGDHTDWSLCPW*IA 104
           LP F    P  L   S   +A +C       G   T SP    +    SLCPW IA
Sbjct: 5   LPHFRY-HPEPLASGSIEASATTCQCCGKARGYVYTGSPYSRHELPPGSLCPWCIA 59

>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)|
          Length = 267

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 352 KAPPTEPPLAESSAGQLTKMW*PPETQLPTFHLTRPSTLTCSSTYP 215
           K P T+PP  + +    T    PP T+ PT+  T P + T S   P
Sbjct: 220 KPPATKPPTPKPTPPTYTPTPKPPATKPPTYTPTPPVSHTPSPPPP 265

>HM14_CAEEL (P20271) Homeobox protein ceh-14|
          Length = 351

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 283 PETQLPTFHLTRPSTLTCSSTYPAAMS 203
           P T  P  H+T PS LT + + P ++S
Sbjct: 303 PSTDPPPMHMTTPSVLTTNFSTPLSLS 329

>DOME_DROME (Q9VWE0) Cytokine receptor precursor (Protein domeless)|
          Length = 1282

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 48  LHAFTTYRDEPVTVPVSLPAIYQGHKDQSVWS 143
           LH FTT  D+ +T+ +++ A YQ H     W+
Sbjct: 495 LHHFTTSPDQLLTLHMAVSANYQSHNTGLHWA 526


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.128    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,839,553
Number of Sequences: 219361
Number of extensions: 539861
Number of successful extensions: 2220
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2217
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)