ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58e11 |
|---|---|
| Clone Library Name | barley_pub |
>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor| Length = 372 Score = 30.8 bits (68), Expect = 1.3 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 9/110 (8%) Frame = +2 Query: 77 AIQRFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTV----TSVIFDGF 244 A+ FK++++ + +TW+ + C Y G +C G+ +++++ IF Sbjct: 34 ALNAFKSSLSEPNLGIFNTWSENTDCCKEWY-GISCDPDSGRVTDISLRGESEDAIFQKA 92 Query: 245 GLCSPMQQDLVDELPDL----ALFQASSNNFGGEV-PILTGLSYMYMLDV 379 G M + + DL +L A GE+ P +T L+ + +LD+ Sbjct: 93 GRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDL 142
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +1 Query: 55 AALPCILRHPAIQEHHHLRPQKRNQHLDRPRH 150 AALP HP HHH P + + H P H Sbjct: 999 AALPPAHHHPPHHHHHHAPPPQPHHHHAHPPH 1030
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 30.0 bits (66), Expect = 2.3 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +2 Query: 113 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT---VTSVIFDGFGLCSPMQQDLVD- 280 P + +W G+D C T+++G C + +L +T I FG +Q+ ++ Sbjct: 338 PPRLAESWKGNDPC--TNWIGIACSNGNITVISLEKMELTGTISPEFGAIKSLQRIILGI 395 Query: 281 ------------ELPDLALFQASSNNFGGEVP 340 LP+L SSN G+VP Sbjct: 396 NNLTGMIPQELTTLPNLKTLDVSSNKLFGKVP 427
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 24.3 bits (51), Expect(2) = 3.5 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = +3 Query: 222 HQSFSMALVCVHRCNKILSTSFPILHSSRLPPTTSAAK 335 HQ+ + A H+ + S P H+ LPP+ A+ Sbjct: 1528 HQAAAAAAALHHQSMLLTSPGLPPQHAISLPPSAGGAQ 1565 Score = 23.5 bits (49), Expect(2) = 3.5 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 85 AIQEHHHLRPQKRNQHLDRPRHLRHDELPRLQ 180 A Q HL+ Q+ QHL + +HL + P Q Sbjct: 1496 AQQAQQHLQ-QQAQQHLQQQQHLAQQQHPHQQ 1526
>CHRA_PSEAE (P14285) Chromate transport protein| Length = 416 Score = 29.3 bits (64), Expect = 3.8 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -3 Query: 255 EHRPKPSKMTDVTVRLLACPCGAPQLKPR*LVVAQMSWPVQVLVTFLGSEVMVFLNRWMA 76 E +PSK TD T + P PQL R L ++W V + +V RW++ Sbjct: 6 EESYRPSKATDATTEAVPPPMSYPQLFARFLKFGLLAWGGPVAQIDMLRRELVDEERWIS 65
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +2 Query: 116 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 229 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>ZNF92_HUMAN (Q03936) Zinc finger protein 92 (Zinc finger protein HTF12)| Length = 586 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +2 Query: 119 NVTSTWTGHDICATT--SYLGFNCGAPHGQASNLTVTSVIFDG 241 N +S +T H I T SY CG Q+SNLT +I+ G Sbjct: 491 NQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTG 533
>YRPE_BACSU (O05410) Hypothetical protein yrpE| Length = 251 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +2 Query: 8 HQHSSSYPQPRDFPSEQLYHAYFAIQRFKNTITSD 112 H+HS + D +E++Y YF + K+ + SD Sbjct: 59 HEHSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSD 93
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 28.9 bits (63), Expect = 5.0 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 1/103 (0%) Frame = +2 Query: 77 AIQRFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCS 256 A+ KN++ +DP V +W + T + C S+ +VT V L Sbjct: 31 ALSALKNSL-ADPNKVLQSWDATLVTPCT-WFHVTCN------SDNSVTRVDLGNANLSG 82 Query: 257 PMQQDLVDELPDLALFQASSNNFGGEVPILTG-LSYMYMLDVH 382 + L +LP+L + SNN G +P G L+ + LD++ Sbjct: 83 QLVMQL-GQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLY 124
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +2 Query: 107 SDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCSPMQQDLVDEL 286 SDP S+W+ ++ +LG +C A SN V SV F L P ++ L Sbjct: 36 SDPAQSLSSWSDNNDVTPCKWLGVSCDA----TSN--VVSVDLSSFMLVGPF-PSILCHL 88 Query: 287 PDLALFQASSNNFGGEV 337 P L +N+ G + Sbjct: 89 PSLHSLSLYNNSINGSL 105
>V70K_OYMV (P20130) 66 kDa protein| Length = 597 Score = 28.5 bits (62), Expect = 6.6 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +3 Query: 225 QSFSMALV---CVHRCNKILSTSFPILHSSRLPPTTSAAKSLSSPDLA 359 Q MAL+ C H + S SFP H S LPP ++ SSP + Sbjct: 469 QHCQMALMENYCSHFSSPSSSVSFPEDHQSSLPPISTRWVQCSSPSFS 516
>CTXA_CHIQU (P58762) Toxin A precursor (CqTX-A)| Length = 462 Score = 28.5 bits (62), Expect = 6.6 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = +2 Query: 26 YPQPRDFPSEQLYHAYFAIQ-----RFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGA 190 YP+ R+ S++++ + ++ R K +T + W + +C++ YL C Sbjct: 293 YPRERNEQSQKIFKFFDLMKVKYDDRLKQDLTGIQVFSSLHWPNYFLCSSKDYLALICTK 352 Query: 191 PHG 199 P+G Sbjct: 353 PYG 355
>VTS1_EMENI (Q5BGC4) Protein vts1| Length = 611 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +2 Query: 113 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTS 226 P NV ++W T+ G GAPH Q S++ + Sbjct: 332 PYNVNASWASMTNTPMTATFGSQLGAPHQQGSDMVANA 369
>NU157_YEAST (P40064) Nucleoporin NUP157 (Nuclear pore protein NUP157)| Length = 1391 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 239 GFGLCSPMQQDLVDELPDLALFQASSNNFGGEVPILTGLSYMYM 370 G G +P Q+ V +PD L Q S+ ++ I L+Y ++ Sbjct: 131 GLGAFTPFQRQQVTNIPDEVLSQVSNTEIKSDMGIFLELNYCWI 174
>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) Length = 1143 Score = 28.1 bits (61), Expect = 8.6 Identities = 20/79 (25%), Positives = 30/79 (37%) Frame = +2 Query: 89 FKNTITSDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCSPMQQ 268 FK I DP N+ S W+ + + G C VT + G GL + Sbjct: 46 FKTMIQDDPNNILSNWSPRK--SPCQFSGVTCLGGR-------VTEINLSGSGLSGIVSF 96 Query: 269 DLVDELPDLALFQASSNNF 325 + L L++ + S N F Sbjct: 97 NAFTSLDSLSVLKLSENFF 115
>RDRP_ORSVS (Q84133) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 220 HREVTRLSMRCPA 182 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>RDRP_ORSVC (P89659) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 220 HREVTRLSMRCPA 182 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,106,045 Number of Sequences: 219361 Number of extensions: 1160157 Number of successful extensions: 3310 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3304 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
