ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58e07 |
|---|---|
| Clone Library Name | barley_pub |
>HS23C_CHERU (P11890) Small heat shock protein, chloroplast precursor| Length = 204 Score = 46.2 bits (108), Expect = 3e-05 Identities = 30/75 (40%), Positives = 39/75 (52%) Frame = +3 Query: 144 SGPALRPAAVSVGVRGYNAGAPLRSHDRDEALEDTXXXXXXXXXXXXSVPSFFSDVFRDP 323 SG RP +VS R +N A + D D L+D SFFSDVF DP Sbjct: 16 SGGIFRPLSVS---RSFNTNAQMGRVDHDHELDDRSNRAPISRRGDFPA-SFFSDVF-DP 70 Query: 324 FSAPQSLGRLLNMMD 368 F A +S+G+L+N+MD Sbjct: 71 FRATRSVGQLMNLMD 85
>HS23M_ARATH (Q96331) Heat shock 22 kDa protein, mitochondrial precursor| Length = 210 Score = 41.2 bits (95), Expect = 0.001 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +3 Query: 93 SSRIPLVRAMENLLAASSGPALRPAAVSVGVRGYNAGAPLRSHDRDEALEDTXXXXXXXX 272 +S + L R + + +A S LRPA S R +N A +RS+D D D Sbjct: 2 ASALALKRLLSSSIAPRSRSVLRPAVSS---RLFNTNA-VRSYDDDGENGD------GVD 51 Query: 273 XXXXSVP----SFFSDVFRDPFSAPQSLGRLLNMMD 368 SVP FFSDVF DPFS +S+ ++LN+MD Sbjct: 52 LYRRSVPRRRGDFFSDVF-DPFSPTRSVSQVLNLMD 86
>RNF25_BOVIN (Q5E9N3) RING finger protein 25 (EC 6.3.2.-)| Length = 458 Score = 35.0 bits (79), Expect = 0.079 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = +1 Query: 34 DSHSQGEKGERGEWLQGWW---PPAGSRWCAPWRTSWPRRPARLSGRLPSPSASAGTTPA 204 +SH+QG KG + G W PP +R CA W + R PA RLP + P Sbjct: 387 ESHNQGGKGPPQDKGPGEWQGPPPRRTRDCAHWERAKNRTPASSYPRLPRGRGAYRPGPR 446 Query: 205 R 207 R Sbjct: 447 R 447
>HS22M_PEA (P46254) Heat shock 22 kDa protein, mitochondrial precursor| Length = 202 Score = 34.3 bits (77), Expect = 0.13 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Frame = +3 Query: 93 SSRIPLVRAMENLLAASSGPALRPAAVSVGVRGYNAGAPLRSHDR--DEALEDTXXXXXX 266 +S + L R + + L +SS LRP A S R +N A +R +D+ D+ D Sbjct: 2 ASSLALKRFLSSGLLSSS--FLRPVASSAS-RSFNTNA-MRQYDQHSDDRNVDVYRHSFP 57 Query: 267 XXXXXXSVPSFFSDVFRDPFSAPQSLGRLLNMMD 368 + SDVF DPFS P+SL ++LNM+D Sbjct: 58 RTRRDDLL---LSDVF-DPFSPPRSLSQVLNMVD 87
>RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)| Length = 459 Score = 32.7 bits (73), Expect = 0.39 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +1 Query: 10 QNPETSEQDSHSQGEKGERGEWLQGWW---PPAGSRWCAPWRTSWPRRPARLSGRLP 171 + P + + HSQG +G E G W PP +R C W S R P RLP Sbjct: 380 KEPMDLKPEPHSQGVEGPPQEKGPGSWQGPPPRRTRDCVRWERSKGRTPGSSYPRLP 436
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 32.3 bits (72), Expect = 0.51 Identities = 22/69 (31%), Positives = 29/69 (42%) Frame = +1 Query: 4 RQQNPETSEQDSHSQGEKGERGEWLQGWWPPAGSRWCAPWRTSWPRRPARLSGRLPSPSA 183 R +P + + + G + R QG PAG P RT + SGR PS S Sbjct: 89 RAASPTPKQASATTPGHESPRETRAQG---PAGQEADGPRRTLQVDSRTQRSGRSPSVSP 145 Query: 184 SAGTTPARP 210 G+TP P Sbjct: 146 DRGSTPTSP 154
>NDK3_ARATH (O49203) Nucleoside diphosphate kinase III,| chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK III) Length = 238 Score = 32.3 bits (72), Expect = 0.51 Identities = 25/68 (36%), Positives = 34/68 (50%) Frame = +3 Query: 3 KAAKSRNIRARQSQSGREGRAWGMASRVVASSRIPLVRAMENLLAASSGPALRPAAVSVG 182 KAAKS A+ ++ EGRA G A+ V AS +IPL + A SSG + + G Sbjct: 11 KAAKSLLSSAKNARFFSEGRAIGAAAAVSASGKIPLYASN---FARSSGSGVASKSWITG 67 Query: 183 VRGYNAGA 206 + A A Sbjct: 68 LLALPAAA 75
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/69 (30%), Positives = 30/69 (43%) Frame = +1 Query: 4 RQQNPETSEQDSHSQGEKGERGEWLQGWWPPAGSRWCAPWRTSWPRRPARLSGRLPSPSA 183 R +P + + + G + R QG P+G +P RT + SGR PS S Sbjct: 86 RTTSPTPKQASATAPGRESPRETRAQG---PSGQEAESPRRTLQVDSRTQRSGRSPSVSP 142 Query: 184 SAGTTPARP 210 G+TP P Sbjct: 143 DRGSTPTSP 151
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Frame = +2 Query: 2 QGSKIQ-KHPSKTVTVRERRESVGNGFKGGGLQ----QDPAGA 115 QG+++Q +HP +TVRERR S + GG + Q PA A Sbjct: 203 QGAQVQLQHPGTPITVRERRPSQPHTQSGGTIHHLGPQSPAAA 245
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 56 RESVGNGFKGGGLQQDPAGARHGEPPG 136 R+S+G+G +G G +Q P+ RHG G Sbjct: 291 RQSLGHGRQGSGSRQSPSHVRHGSGSG 317 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 59 ESVGNGFKGGGLQQDPAGARHGEPPGR 139 +S G+G +G G +Q P+ RHG GR Sbjct: 2534 QSPGHGQRGSGSRQSPSYGRHGSGSGR 2560 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 59 ESVGNGFKGGGLQQDPAGARHGEPPGR 139 +S G+G +G G +Q P+ RHG GR Sbjct: 2064 QSPGHGQRGSGSRQSPSYGRHGSGSGR 2090 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 59 ESVGNGFKGGGLQQDPAGARHGEPPGR 139 +S G+G +G G +Q P+ RHG GR Sbjct: 1594 QSPGHGQRGSGSRQSPSYGRHGSGSGR 1620 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 59 ESVGNGFKGGGLQQDPAGARHGEPPGR 139 +S G+G +G G +Q P+ RHG GR Sbjct: 1124 QSPGHGQRGSGSRQSPSYGRHGSGSGR 1150 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 59 ESVGNGFKGGGLQQDPAGARHGEPPGR 139 +S G+G +G G Q P+ RHG GR Sbjct: 889 QSPGHGQRGSGSGQSPSYGRHGSGSGR 915
>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein| 0) (EP0) Length = 410 Score = 30.0 bits (66), Expect = 2.5 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Frame = +1 Query: 7 QQNPETSEQDSHSQGEKGERGEWLQGWWPPAGSRWCAPWRTSWPRRPARLSGRLPSPSAS 186 Q ET E S +G + G G P GS A S P S R PSPSAS Sbjct: 319 QAQGETPEAPSSGEGSSAQHGASGAGAGP--GSANTAASARSSPSSSPSSSMRRPSPSAS 376 Query: 187 AGTTPA----RPSAATTG 228 A T A P+++++G Sbjct: 377 APETAAPRGGPPASSSSG 394
>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 478 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/44 (34%), Positives = 18/44 (40%) Frame = +1 Query: 91 PPAGSRWCAPWRTSWPRRPARLSGRLPSPSASAGTTPARPSAAT 222 PP + APW TS R + R+PS P P A T Sbjct: 406 PPPSTGTAAPWATSRAGREPPTTSRIPSALPDTSRLPPGPMAPT 449
>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1) Length = 1847 Score = 29.6 bits (65), Expect = 3.3 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Frame = +3 Query: 18 RNIRARQSQSGREGRAWGMA---SRVVASSRIPLVRAMENLLAASSGPALRPAAVSVGVR 188 R ++AR S G+EG W R++ S+ ++R + + LRPA Sbjct: 238 RELQARLSLVGKEGPQWLHMRDFDRLLRESQREVLRLQRQIALRNQREPLRPARSQGSTA 297 Query: 189 GYNAGAPLRSHDRDEALED 245 + GAP + LED Sbjct: 298 PSSVGAPAPGAPGETVLED 316
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 29.3 bits (64), Expect = 4.3 Identities = 23/69 (33%), Positives = 28/69 (40%) Frame = -1 Query: 208 GAPALYPRTPTETAAGLRAGPDDAARRFSMARTSGILLEATTLEAIPHALPSLPDCDCLA 29 G Y P ET A + G DA + + S L L P + PSL DCLA Sbjct: 3149 GYSPFYEPDPQETEARIVGGRFDAFQLYPNTSQSATLFLRKVLSVHPWSRPSLQ--DCLA 3206 Query: 28 RMFLDFAAL 2 +L A L Sbjct: 3207 HPWLQDAYL 3215
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 29.3 bits (64), Expect = 4.3 Identities = 23/69 (33%), Positives = 28/69 (40%) Frame = -1 Query: 208 GAPALYPRTPTETAAGLRAGPDDAARRFSMARTSGILLEATTLEAIPHALPSLPDCDCLA 29 G Y P ET A + G DA + + S L L P + PSL DCLA Sbjct: 3152 GYSPFYEPDPQETEARIVGGRFDAFQLYPNTSQSATLFLRKVLSVHPWSRPSLQ--DCLA 3209 Query: 28 RMFLDFAAL 2 +L A L Sbjct: 3210 HPWLQDAYL 3218
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 29.3 bits (64), Expect = 4.3 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Frame = +1 Query: 58 GERGEWLQGWWPPAGSRWCAPWRTSWPRRP--ARLSGRLPSPSASAGTTPARPSAA 219 G R QG P G R P S P RP + R P P SAG P RP A Sbjct: 228 GPRPAAAQGGPRPGGPR---PSPGSMPPRPNPGAMPQRTPRPGPSAGGRPGRPGGA 280
>Y3672_STRCO (P40180) Putative glycosyl transferase SCO3672 (EC 2.-.-.-)| Length = 411 Score = 28.9 bits (63), Expect = 5.7 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Frame = +3 Query: 12 KSRNIRARQSQSGREGRAWGMASR---VVASSRIPLVRAMENLLAASSGPALR----PAA 170 + +RA ++GR RAW + R + +R + +A A+ G + R P Sbjct: 333 RGAGVRAPVRRAGRGARAWAVVRRPRTAMRRARAGVSQAPRGATGAAGGASFRAAIFPVR 392 Query: 171 VSVGVRGYNAGAPLR 215 + GAPLR Sbjct: 393 QATSTENVQVGAPLR 407
>DBP9_NEUCR (Q7S6F3) ATP-dependent RNA helicase dbp-9 (EC 3.6.1.-)| Length = 676 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -3 Query: 212 EGRAGVVPADADGDGSRPESRAGRRGQEVLHGAHQRDPAG 93 E + G VP GD + + G +G + HG +++ P G Sbjct: 625 ETQIGFVPFKKQGDDKKTRGKKGAKGGKGGHGKYKKGPGG 664
>U269_DEIRA (Q9RXP1) Protein DR0269| Length = 322 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +2 Query: 44 VRERRESVGNGFKGGGLQQDPAGARHGEPPG 136 +RE RES G GF+GG D G R E G Sbjct: 128 MRELRESQGGGFRGGDRGGDRGGFRPREDRG 158
>ABHD5_PONPY (Q5RBI4) Abhydrolase domain-containing protein 5| Length = 349 Score = 28.9 bits (63), Expect = 5.7 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 25 SEQDSHSQGEKGERGEWLQGWWPPAGSRWCAPWRTS 132 +E++ + GER WL GW P WC P TS Sbjct: 3 AEEEEVDSADTGERSGWLTGWLP----TWC-PTSTS 33
>ZN672_HUMAN (Q499Z4) Zinc finger protein 672| Length = 452 Score = 28.5 bits (62), Expect = 7.4 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = +3 Query: 27 RARQSQSGREGRAWGMASRVVASSRIPLVRAMENLLAASSGPALRPAAVSVGVRGYNAGA 206 R RQ R R + +R S + +A + L +S PA P + R + +GA Sbjct: 118 RRRQHLPERPRRC-PLCARTFRQSALLFHQARAHPLGTTSDPAAPPHRCAQCPRAFRSGA 176 Query: 207 PLRSHDR 227 LRSH R Sbjct: 177 GLRSHPR 183
>DTBP1_MOUSE (Q91WZ8) Dystrobrevin-binding protein 1 (Dysbindin)| (Hermansky-Pudlak syndrome 7 protein homolog) Length = 352 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +1 Query: 154 LSGRLPSPSASAGTTPARPSAAT 222 +S ++PSPS SA PA PSA T Sbjct: 281 MSLQIPSPSESASQPPASPSACT 303
>ABHD5_HUMAN (Q8WTS1) Abhydrolase domain-containing protein 5| Length = 349 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +1 Query: 25 SEQDSHSQGEKGERGEWLQGWWPPAGSRWC 114 +E++ + GER WL GW P WC Sbjct: 3 AEEEEVDSADTGERSGWLTGWLP----TWC 28
>CALCR_HUMAN (P30988) Calcitonin receptor precursor (CT-R)| Length = 490 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 121 WRTSWPRRPARLSGRLPSPSASAGTTP 201 W W RRP+ S R + +A AG P Sbjct: 429 WNQRWGRRPSNRSARAAAAAAEAGDIP 455
>THIK_YEAST (P27796) 3-ketoacyl-CoA thiolase, peroxisomal precursor (EC| 2.3.1.16) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) (Peroxisomal 3-oxoacyl-CoA thiolase) Length = 417 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 2 QGSKIQKHPSKTVTVRERRESVGNGFKG 85 + S ++K P V V R ++G GFKG Sbjct: 25 KNSLLEKRPEDVVIVAANRSAIGKGFKG 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.127 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,689,849 Number of Sequences: 219361 Number of extensions: 824838 Number of successful extensions: 3203 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3202 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
