ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLYG1_SOYBN (P04776) Glycinin G1 precursor [Contains: Glycinin A... 31 1.8
2SYE_MYCMO (Q6KIT3) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 29 5.2
3RPTOR_MOUSE (Q8K4Q0) Regulatory associated protein of mTOR (Rapt... 28 8.9

>GLYG1_SOYBN (P04776) Glycinin G1 precursor [Contains: Glycinin A1a subunit;|
           Glycinin Bx subunit]
          Length = 495

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 14  CRSSPQTCQRRRGTQQKNMGNGDDEKV 94
           C+   + CQR RG+Q K+  NG DE +
Sbjct: 290 CKGKDKHCQRPRGSQSKSRRNGIDETI 316



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>SYE_MYCMO (Q6KIT3) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 464

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 43  SPRNPAEKYGKWRRRE 90
           SP+NP EKYGK+R+ E
Sbjct: 74  SPKNPNEKYGKYRQSE 89



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>RPTOR_MOUSE (Q8K4Q0) Regulatory associated protein of mTOR (Raptor) (P150|
           target of rapamycin (TOR)-scaffold protein)
          Length = 1335

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 4   VLHVSKLTTDVPASPRNPAEKYGKWRRREGGRPPPLSTA 120
           +L  S LT   PASP N     G    + GG PP  ST+
Sbjct: 850 ILDTSSLTQSAPASPTNK----GMHMHQVGGSPPASSTS 884


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.130    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,290,276
Number of Sequences: 219361
Number of extensions: 468057
Number of successful extensions: 1438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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