ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197180.1| Oryza sativa (japonica cultivar-group) putative lanthionine synthetase (OSJNBa0017E08.4), mRNA Length = 1341 Score = 151 bits (76), Expect = 2e-33 Identities = 144/167 (86%) Strand = Plus / Plus Query: 286 ccgcggcctgctctctctcccctaccccaggctctccgaccggctcctccgcgccgccct 345 ||||||| |||| || ||||| ||| |||| |||||||| |||||||||||||||| || Sbjct: 204 ccgcggcttgctgtcgctcccttactccagcctctccgaaaggctcctccgcgccgcgct 263 Query: 346 ccggctcaaggacaaggtcgtgcaagagacgtggactaggacggngggccaggtgacgga 405 |||| |||||||||||||| || | ||||||||||| ||| || | | ||||||||||| Sbjct: 264 ccggatcaaggacaaggtcatggaggagacgtggaccagggcgcggcgacaggtgacgga 323 Query: 406 ctacgcgctctacacgggcgcgctagggacggcgctactgctgttca 452 |||| ||||||||||||||||||| || |||||||| |||||||||| Sbjct: 324 ctacacgctctacacgggcgcgctcggcacggcgctcctgctgttca 370 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 202 catggccgaccgcttctttcccaacgacctccccgacttcgtcgccgaggcacccgacgg 261 |||||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 141 catggcggaccgctacttccccaacgacctcccggacttcgtcgccgaggcccccgacgg 200 Query: 262 cggc 265 |||| Sbjct: 201 cggc 204
>dbj|AK073596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048L17, full insert sequence Length = 1603 Score = 151 bits (76), Expect = 2e-33 Identities = 144/167 (86%) Strand = Plus / Plus Query: 286 ccgcggcctgctctctctcccctaccccaggctctccgaccggctcctccgcgccgccct 345 ||||||| |||| || ||||| ||| |||| |||||||| |||||||||||||||| || Sbjct: 203 ccgcggcttgctgtcgctcccttactccagcctctccgaaaggctcctccgcgccgcgct 262 Query: 346 ccggctcaaggacaaggtcgtgcaagagacgtggactaggacggngggccaggtgacgga 405 |||| |||||||||||||| || | ||||||||||| ||| || | | ||||||||||| Sbjct: 263 ccggatcaaggacaaggtcatggaggagacgtggaccagggcgcggcgacaggtgacgga 322 Query: 406 ctacgcgctctacacgggcgcgctagggacggcgctactgctgttca 452 |||| ||||||||||||||||||| || |||||||| |||||||||| Sbjct: 323 ctacacgctctacacgggcgcgctcggcacggcgctcctgctgttca 369 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 202 catggccgaccgcttctttcccaacgacctccccgacttcgtcgccgaggcacccgacgg 261 |||||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 140 catggcggaccgctacttccccaacgacctcccggacttcgtcgccgaggcccccgacgg 199 Query: 262 cggc 265 |||| Sbjct: 200 cggc 203
>dbj|AK064225.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G06, full insert sequence Length = 1552 Score = 151 bits (76), Expect = 2e-33 Identities = 144/167 (86%) Strand = Plus / Plus Query: 286 ccgcggcctgctctctctcccctaccccaggctctccgaccggctcctccgcgccgccct 345 ||||||| |||| || ||||| ||| |||| |||||||| |||||||||||||||| || Sbjct: 195 ccgcggcttgctgtcgctcccttactccagcctctccgaaaggctcctccgcgccgcgct 254 Query: 346 ccggctcaaggacaaggtcgtgcaagagacgtggactaggacggngggccaggtgacgga 405 |||| |||||||||||||| || | ||||||||||| ||| || | | ||||||||||| Sbjct: 255 ccggatcaaggacaaggtcatggaggagacgtggaccagggcgcggcgacaggtgacgga 314 Query: 406 ctacgcgctctacacgggcgcgctagggacggcgctactgctgttca 452 |||| ||||||||||||||||||| || |||||||| |||||||||| Sbjct: 315 ctacacgctctacacgggcgcgctcggcacggcgctcctgctgttca 361 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 202 catggccgaccgcttctttcccaacgacctccccgacttcgtcgccgaggcacccgacgg 261 |||||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 132 catggcggaccgctacttccccaacgacctcccggacttcgtcgccgaggcccccgacgg 191 Query: 262 cggc 265 |||| Sbjct: 192 cggc 195
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 202 catggccgaccgcttctttcccaacgacctccccgacttcgtcgccgaggcacccgacgg 261 |||||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 35831 catggcggaccgctacttccccaacgacctcccggacttcgtcgccgaggcccccgacgg 35772 Query: 262 cggc 265 |||| Sbjct: 35771 cggc 35768 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 371 gagacgtggactaggacggngggccaggtgacggactacgcgctctacacgggcgcgcta 430 ||||||||||| ||| || | | ||||||||||||||| ||||||||||||||||||| Sbjct: 35568 gagacgtggaccagggcgcggcgacaggtgacggactacacgctctacacgggcgcgctc 35509 Query: 431 gggacggcgctactgctgttca 452 || |||||||| |||||||||| Sbjct: 35508 ggcacggcgctcctgctgttca 35487 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 286 ccgcggcctgctctctctcccctaccccaggctctccgaccggctcctccgcgccgccct 345 ||||||| |||| || ||||| ||| |||| |||||||| |||||||||||||||| || Sbjct: 35768 ccgcggcttgctgtcgctcccttactccagcctctccgaaaggctcctccgcgccgcgct 35709 Query: 346 ccggctcaaggacaaggt 363 |||| ||||||||||||| Sbjct: 35708 ccggatcaaggacaaggt 35691
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 202 catggccgaccgcttctttcccaacgacctccccgacttcgtcgccgaggcacccgacgg 261 |||||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 18470862 catggcggaccgctacttccccaacgacctcccggacttcgtcgccgaggcccccgacgg 18470921 Query: 262 cggc 265 |||| Sbjct: 18470922 cggc 18470925 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 371 gagacgtggactaggacggngggccaggtgacggactacgcgctctacacgggcgcgcta 430 ||||||||||| ||| || | | ||||||||||||||| ||||||||||||||||||| Sbjct: 18471125 gagacgtggaccagggcgcggcgacaggtgacggactacacgctctacacgggcgcgctc 18471184 Query: 431 gggacggcgctactgctgttca 452 || |||||||| |||||||||| Sbjct: 18471185 ggcacggcgctcctgctgttca 18471206 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 286 ccgcggcctgctctctctcccctaccccaggctctccgaccggctcctccgcgccgccct 345 ||||||| |||| || ||||| ||| |||| |||||||| |||||||||||||||| || Sbjct: 18470925 ccgcggcttgctgtcgctcccttactccagcctctccgaaaggctcctccgcgccgcgct 18470984 Query: 346 ccggctcaaggacaaggt 363 |||| ||||||||||||| Sbjct: 18470985 ccggatcaaggacaaggt 18471002 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cgacgacgcgcgcacggcgc 192 |||||||||||||||||||| Sbjct: 12371447 cgacgacgcgcgcacggcgc 12371466
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 87.7 bits (44), Expect = 3e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 202 catggccgaccgcttctttcccaacgacctccccgacttcgtcgccgaggcacccgacgg 261 |||||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 18480915 catggcggaccgctacttccccaacgacctcccggacttcgtcgccgaggcccccgacgg 18480974 Query: 262 cggc 265 |||| Sbjct: 18480975 cggc 18480978 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 371 gagacgtggactaggacggngggccaggtgacggactacgcgctctacacgggcgcgcta 430 ||||||||||| ||| || | | ||||||||||||||| ||||||||||||||||||| Sbjct: 18481178 gagacgtggaccagggcgcggcgacaggtgacggactacacgctctacacgggcgcgctc 18481237 Query: 431 gggacggcgctactgctgttca 452 || |||||||| |||||||||| Sbjct: 18481238 ggcacggcgctcctgctgttca 18481259 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 286 ccgcggcctgctctctctcccctaccccaggctctccgaccggctcctccgcgccgccct 345 ||||||| |||| || ||||| ||| |||| |||||||| |||||||||||||||| || Sbjct: 18480978 ccgcggcttgctgtcgctcccttactccagcctctccgaaaggctcctccgcgccgcgct 18481037 Query: 346 ccggctcaaggacaaggt 363 |||| ||||||||||||| Sbjct: 18481038 ccggatcaaggacaaggt 18481055 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cgacgacgcgcgcacggcgc 192 |||||||||||||||||||| Sbjct: 12378787 cgacgacgcgcgcacggcgc 12378806
>gb|AY110191.1| Zea mays CL21485_1 mRNA sequence Length = 1402 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 396 aggtgacggactacgcgctctacacgggcgcgctagggacggcgctactgctgttca 452 |||||||||||||| |||||||||||||| | || ||||| ||||| |||||||||| Sbjct: 1112 aggtgacggactacacgctctacacgggctctctcgggacagcgctgctgctgttca 1056 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Minus Query: 201 ccatggccgaccgcttctttcccaacgacctccccgacttcgtcgccgaggc 252 ||||||| || |||||| ||||||| ||| | || ||||||||||||||||| Sbjct: 1313 ccatggctgatcgcttcattcccaatgactttcctgacttcgtcgccgaggc 1262 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 290 ggcctgctctctctcccctaccccaggctctccgacc 326 ||||||||||| || || ||| ||||||||||||||| Sbjct: 1218 ggcctgctctcgcttccgtacaccaggctctccgacc 1182
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 252 cacccgacggcggcggccctcccgccgccg 281 |||||| || |||||||||||||||||||| Sbjct: 3078713 cacccgccgccggcggccctcccgccgccg 3078684
>emb|AL844215.9| Mouse DNA sequence from clone RP23-34D22 on chromosome 4, complete sequence Length = 82193 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 444 tgctgttcaggccttccagtca 465 |||||||||||||||||||||| Sbjct: 33420 tgctgttcaggccttccagtca 33441
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 398 gtgacggactacgcgctctaca 419 |||||||||||||||||||||| Sbjct: 2314361 gtgacggactacgcgctctaca 2314340
>ref|XM_519483.1| PREDICTED: Pan troglodytes similar to homeo box HB9; Sacral agenesis, autosomal dominant (Currarino triad); Homeo box-HB9 (LOC463845), mRNA Length = 690 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 521 ccggctcctccgcgccgccct 501
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 253 acccgacggcggcggccctcccgccgccg 281 |||||||| ||||||| |||||||||||| Sbjct: 69273 acccgacgtcggcggcactcccgccgccg 69301
>gb|AC006357.5| Homo sapiens PAC clone RP5-1121A15 from 7, complete sequence Length = 130492 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 21236 ccggctcctccgcgccgccct 21216
>emb|X56537.1|HSF9HMEO Human novel homeobox mRNA for a DNA binding protein Length = 1254 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 495 ccggctcctccgcgccgccct 475
>gb|U07664.1|HSHB9HB2 Homo sapiens HB9 homeobox gene, exons 2 and 3 and complete cds Length = 3484 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 2098 ccggctcctccgcgccgccct 2078
>emb|CR623223.1| full-length cDNA clone CL0BB009ZA03 of Neuroblastoma of Homo sapiens (human) Length = 2029 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 1159 ccggctcctccgcgccgccct 1139
>ref|NM_005515.3| Homo sapiens homeobox HB9 (HLXB9), mRNA Length = 2176 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 1288 ccggctcctccgcgccgccct 1268
>gb|AF107457.1|AF107457 Homo sapiens clone HB9 mRNA sequence Length = 2061 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 1172 ccggctcctccgcgccgccct 1152
>gb|AC147215.4| Pan troglodytes BAC clone RP43-141N5 from chromosome 7, complete sequence Length = 179309 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 36104 ccggctcctccgcgccgccct 36124
>gb|AC114815.5| Homo sapiens BAC clone RP11-1369K4 from 4, complete sequence Length = 125402 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 ctcctccgcgccgccctccgg 349 ||||||||||||||||||||| Sbjct: 62248 ctcctccgcgccgccctccgg 62228
>gb|AF107453.1|HSHB9G2 Homo sapiens homeotic protein HB9 gene, exons 2 and 3 and partial cds Length = 1979 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccggctcctccgcgccgccct 345 ||||||||||||||||||||| Sbjct: 979 ccggctcctccgcgccgccct 959
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cgacgacgcgcgcacggcgc 192 |||||||||||||||||||| Sbjct: 132728 cgacgacgcgcgcacggcgc 132709
>gb|BC008733.2| Homo sapiens RNA binding motif protein 10, transcript variant 1, mRNA (cDNA clone MGC:997 IMAGE:3163064), complete cds Length = 3414 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aaatggcgacgacgagaagg 92 |||||||||||||||||||| Sbjct: 39 aaatggcgacgacgagaagg 20
>gb|AC101760.9| Mus musculus chromosome 1, clone RP24-196A8, complete sequence Length = 163195 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cctgctctctctcccctacc 311 |||||||||||||||||||| Sbjct: 159203 cctgctctctctcccctacc 159184
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 accggctcctccgcgccgccctcc 347 |||||||| ||||||||||||||| Sbjct: 89978 accggctcgtccgcgccgccctcc 89955
>ref|NM_152856.1| Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 2, mRNA Length = 3190 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aaatggcgacgacgagaagg 92 |||||||||||||||||||| Sbjct: 40 aaatggcgacgacgagaagg 21
>ref|NM_005676.3| Homo sapiens RNA binding motif protein 10 (RBM10), transcript variant 1, mRNA Length = 3415 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aaatggcgacgacgagaagg 92 |||||||||||||||||||| Sbjct: 40 aaatggcgacgacgagaagg 21
>ref|XM_547176.2| PREDICTED: Canis familiaris similar to protease, serine, 22 (LOC490056), mRNA Length = 1191 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcggccctcccgccgccgg 282 |||||||||||||||||||| Sbjct: 943 ggcggccctcccgccgccgg 962
>emb|AL513366.11| Human DNA sequence from clone CTD-2522E6 on chromosome X Contains the RGN gene for regucalcin (senescence marker protein-30) (RC, SMP30), the gene for neuronal protein 17.3 (P17.3), the RBM10 gene for RNA binding motif protein 10 (MGC997, MGC1132, DXS8237E, KIAA0122), an inositol 1,3,4-triphosphate 5/6 kinase (ITPK1) pseudogene, the UBE1 gene for ubiquitin-activating enzyme E1 (A1S9T and BN75 temperature sensitivity complementing) (A1S9, A1ST, GXP1, A1S9T, UBE1X, MGC4781), the 5' UTR of the PCTK1 gene for PCTAIRE protein kinase 1 and five CpG islands, complete sequence Length = 145456 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aaatggcgacgacgagaagg 92 |||||||||||||||||||| Sbjct: 70316 aaatggcgacgacgagaagg 70297
>gb|DQ397867.1| Cenarchaeum symbiosum clone C12D02, complete sequence Length = 38715 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 cctccgcgccgccctccggc 350 |||||||||||||||||||| Sbjct: 3969 cctccgcgccgccctccggc 3988
>gb|DQ397580.1| Cenarchaeum symbiosum clone C18D02, complete sequence Length = 38412 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 cctccgcgccgccctccggc 350 |||||||||||||||||||| Sbjct: 5627 cctccgcgccgccctccggc 5608
>dbj|AK000962.1| Homo sapiens cDNA FLJ10100 fis, clone HEMBA1002469, moderately similar to DXS8237E PROTEIN Length = 1451 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aaatggcgacgacgagaagg 92 |||||||||||||||||||| Sbjct: 22 aaatggcgacgacgagaagg 3
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gcgcgcacggcgcggcagca 199 |||||||||||||||||||| Sbjct: 3401084 gcgcgcacggcgcggcagca 3401103
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 accggctcctccgcgccgcc 343 |||||||||||||||||||| Sbjct: 16116359 accggctcctccgcgccgcc 16116340
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcggccctcccgccgccgg 282 |||||||||||||||||||| Sbjct: 8849037 ggcggccctcccgccgccgg 8849056
>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0618D11 Length = 150103 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 accggctcctccgcgccgcc 343 |||||||||||||||||||| Sbjct: 145088 accggctcctccgcgccgcc 145069
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 accggctcctccgcgccgcc 343 |||||||||||||||||||| Sbjct: 21152 accggctcctccgcgccgcc 21133
>gb|AY108765.1| Zea mays PCO088803 mRNA sequence Length = 704 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 227 gacctccccgacttcgtcgccgaggcacccgacggc 262 ||||||||| || ||||||||||||| |||| |||| Sbjct: 27 gacctcccccacgtcgtcgccgaggctcccgccggc 62
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 agcgacgacgcgcgcacggc 190 |||||||||||||||||||| Sbjct: 1971466 agcgacgacgcgcgcacggc 1971485
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gcgcgcacggcgcggcagca 199 |||||||||||||||||||| Sbjct: 3401029 gcgcgcacggcgcggcagca 3401048
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gcgcgcacggcgcggcagca 199 |||||||||||||||||||| Sbjct: 80137 gcgcgcacggcgcggcagca 80156
>gb|AC142191.5| Mus musculus BAC clone RP24-530N5 from 6, complete sequence Length = 197971 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggaaggcctccaccactct 112 |||||||||||||||||||| Sbjct: 176271 tggaaggcctccaccactct 176252
>gb|AC140337.3| Mus musculus BAC clone RP23-238H7 from 1, complete sequence Length = 229594 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cctgctctctctcccctacc 311 |||||||||||||||||||| Sbjct: 180913 cctgctctctctcccctacc 180932
>gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complete sequence Length = 209846 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tggaaggcctccaccactct 112 |||||||||||||||||||| Sbjct: 19592 tggaaggcctccaccactct 19573
>emb|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-73E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 141534 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ctctctcccctaccccaggc 317 |||||||||||||||||||| Sbjct: 69411 ctctctcccctaccccaggc 69430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,178,449 Number of Sequences: 3902068 Number of extensions: 3178449 Number of successful extensions: 72925 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71936 Number of HSP's gapped (non-prelim): 989 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
