ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RISB_BACTN (Q89ZW8) 6,7-dimethyl-8-ribityllumazine synthase (EC ... 29 4.7
2TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.4... 29 6.2
3MDTC_ERWCT (Q6D2B0) Multidrug resistance protein mdtC (Multidrug... 29 6.2
4PARD3_HUMAN (Q8TEW0) Partitioning-defective 3 homolog (PARD-3) (... 28 8.1

>RISB_BACTN (Q89ZW8) 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (DMRL|
           synthase) (Lumazine synthase) (Riboflavin synthase beta
           chain)
          Length = 143

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 444 CIDSGDTPKTLALALGAGQGIWSSNSTG 361
           C+  GDTP    + +GA QGI   N+TG
Sbjct: 68  CVIKGDTPHFDYVCMGATQGITELNATG 95



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>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit) (HEST2) (Telomerase-associated
           protein 2) (TP2)
          Length = 1132

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 298 PADVHPPPAAPRGGRVVGVRHL-ARQRHRLAQRGEQQL 188
           P D  PPPAAP   +V  ++ L AR   RL +RG + +
Sbjct: 59  PWDARPPPAAPSFRQVSCLKELVARVLQRLCERGAKNV 96



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>MDTC_ERWCT (Q6D2B0) Multidrug resistance protein mdtC (Multidrug transporter|
           mdtC)
          Length = 1026

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 347 GFLGLPVEFELQIPCPAPSASASVFGVSPESM 442
           GF  LPV    Q+  P  S SAS+ G SPE+M
Sbjct: 28  GFRLLPVSPLPQVDFPVISVSASLAGASPETM 59



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>PARD3_HUMAN (Q8TEW0) Partitioning-defective 3 homolog (PARD-3) (PAR-3)|
           (Atypical PKC isotype-specific-interacting protein)
           (ASIP) (CTCL tumor antigen se2-5) (PAR3-alpha)
          Length = 1356

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 319 DVADVGGPADVHPPPAAPRGGRVVGV 242
           +V + GGP  +H  P + RGGR +G+
Sbjct: 276 EVPNDGGPLGIHVVPFSARGGRTLGL 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,420,151
Number of Sequences: 219361
Number of extensions: 398434
Number of successful extensions: 2181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2180
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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