ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58d12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475906.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1248 Score = 155 bits (78), Expect = 1e-34 Identities = 242/296 (81%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 130 gcgacggtggccagcgccgtggcgtccctcaccaagtggatgcgcgagcgcgcggcggag 189 |||||||||||| | |||||||| | || |||||||||||||| ||||||||||||| Sbjct: 40 gcgacggtggccggagccgtggccgcgctgttcaagtggatgcgcgcgcgcgcggcggag 99 Query: 190 gcgccgccgaacctgctcgccgacgagcgcgacgacctcgtcgtgctccagctctcgctc 249 || || |||||||| |||||||||||||||||||||||| | | ||||||||||| ||| Sbjct: 100 gctccaccgaacctcctcgccgacgagcgcgacgacctcctgctcctccagctctccctc 159 Query: 250 cgccgcgtgccgcccaagcccaccaccaagccgcacctgctcccgctcccgcaccccg-- 307 |||||| | |||||| || || |||||||||| ||| || |||||||| ||||||| Sbjct: 160 cgccgcatcccgccctcaccgacgaccaagccgcgcctccttccgctcccccaccccgtc 219 Query: 308 -tcgtcgcccactcggccgcctccgtctgcgtcatctccgacgaccgcgccggctccggc 366 ||||| || | | | |||||| ||||||||||||||||||||||| || ||| || Sbjct: 220 atcgtccccggcgagtcggcctccatctgcgtcatctccgacgaccgccccaagtcccgc 279 Query: 367 tcccccgccgctaccgccatcctcgacgcggccaggtccctcaagctccccgtctc 422 ||||| ||||| ||| | | ||||||||| ||||||||| | | ||||||||||| Sbjct: 280 tccccggccgcctccgacctgctcgacgcgtccaggtcccaccacctccccgtctc 335
>gb|AC144735.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0001A14, complete sequence Length = 129292 Score = 155 bits (78), Expect = 1e-34 Identities = 242/296 (81%), Gaps = 3/296 (1%) Strand = Plus / Minus Query: 130 gcgacggtggccagcgccgtggcgtccctcaccaagtggatgcgcgagcgcgcggcggag 189 |||||||||||| | |||||||| | || |||||||||||||| ||||||||||||| Sbjct: 13503 gcgacggtggccggagccgtggccgcgctgttcaagtggatgcgcgcgcgcgcggcggag 13444 Query: 190 gcgccgccgaacctgctcgccgacgagcgcgacgacctcgtcgtgctccagctctcgctc 249 || || |||||||| |||||||||||||||||||||||| | | ||||||||||| ||| Sbjct: 13443 gctccaccgaacctcctcgccgacgagcgcgacgacctcctgctcctccagctctccctc 13384 Query: 250 cgccgcgtgccgcccaagcccaccaccaagccgcacctgctcccgctcccgcaccccg-- 307 |||||| | |||||| || || |||||||||| ||| || |||||||| ||||||| Sbjct: 13383 cgccgcatcccgccctcaccgacgaccaagccgcgcctccttccgctcccccaccccgtc 13324 Query: 308 -tcgtcgcccactcggccgcctccgtctgcgtcatctccgacgaccgcgccggctccggc 366 ||||| || | | | |||||| ||||||||||||||||||||||| || ||| || Sbjct: 13323 atcgtccccggcgagtcggcctccatctgcgtcatctccgacgaccgccccaagtcccgc 13264 Query: 367 tcccccgccgctaccgccatcctcgacgcggccaggtccctcaagctccccgtctc 422 ||||| ||||| ||| | | ||||||||| ||||||||| | | ||||||||||| Sbjct: 13263 tccccggccgcctccgacctgctcgacgcgtccaggtcccaccacctccccgtctc 13208
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 155 bits (78), Expect = 1e-34 Identities = 242/296 (81%), Gaps = 3/296 (1%) Strand = Plus / Minus Query: 130 gcgacggtggccagcgccgtggcgtccctcaccaagtggatgcgcgagcgcgcggcggag 189 |||||||||||| | |||||||| | || |||||||||||||| ||||||||||||| Sbjct: 142357 gcgacggtggccggagccgtggccgcgctgttcaagtggatgcgcgcgcgcgcggcggag 142298 Query: 190 gcgccgccgaacctgctcgccgacgagcgcgacgacctcgtcgtgctccagctctcgctc 249 || || |||||||| |||||||||||||||||||||||| | | ||||||||||| ||| Sbjct: 142297 gctccaccgaacctcctcgccgacgagcgcgacgacctcctgctcctccagctctccctc 142238 Query: 250 cgccgcgtgccgcccaagcccaccaccaagccgcacctgctcccgctcccgcaccccg-- 307 |||||| | |||||| || || |||||||||| ||| || |||||||| ||||||| Sbjct: 142237 cgccgcatcccgccctcaccgacgaccaagccgcgcctccttccgctcccccaccccgtc 142178 Query: 308 -tcgtcgcccactcggccgcctccgtctgcgtcatctccgacgaccgcgccggctccggc 366 ||||| || | | | |||||| ||||||||||||||||||||||| || ||| || Sbjct: 142177 atcgtccccggcgagtcggcctccatctgcgtcatctccgacgaccgccccaagtcccgc 142118 Query: 367 tcccccgccgctaccgccatcctcgacgcggccaggtccctcaagctccccgtctc 422 ||||| ||||| ||| | | ||||||||| ||||||||| | | ||||||||||| Sbjct: 142117 tccccggccgcctccgacctgctcgacgcgtccaggtcccaccacctccccgtctc 142062
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 155 bits (78), Expect = 1e-34 Identities = 242/296 (81%), Gaps = 3/296 (1%) Strand = Plus / Minus Query: 130 gcgacggtggccagcgccgtggcgtccctcaccaagtggatgcgcgagcgcgcggcggag 189 |||||||||||| | |||||||| | || |||||||||||||| ||||||||||||| Sbjct: 27546227 gcgacggtggccggagccgtggccgcgctgttcaagtggatgcgcgcgcgcgcggcggag 27546168 Query: 190 gcgccgccgaacctgctcgccgacgagcgcgacgacctcgtcgtgctccagctctcgctc 249 || || |||||||| |||||||||||||||||||||||| | | ||||||||||| ||| Sbjct: 27546167 gctccaccgaacctcctcgccgacgagcgcgacgacctcctgctcctccagctctccctc 27546108 Query: 250 cgccgcgtgccgcccaagcccaccaccaagccgcacctgctcccgctcccgcaccccg-- 307 |||||| | |||||| || || |||||||||| ||| || |||||||| ||||||| Sbjct: 27546107 cgccgcatcccgccctcaccgacgaccaagccgcgcctccttccgctcccccaccccgtc 27546048 Query: 308 -tcgtcgcccactcggccgcctccgtctgcgtcatctccgacgaccgcgccggctccggc 366 ||||| || | | | |||||| ||||||||||||||||||||||| || ||| || Sbjct: 27546047 atcgtccccggcgagtcggcctccatctgcgtcatctccgacgaccgccccaagtcccgc 27545988 Query: 367 tcccccgccgctaccgccatcctcgacgcggccaggtccctcaagctccccgtctc 422 ||||| ||||| ||| | | ||||||||| ||||||||| | | ||||||||||| Sbjct: 27545987 tccccggccgcctccgacctgctcgacgcgtccaggtcccaccacctccccgtctc 27545932
>dbj|AK073857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074P11, full insert sequence Length = 1801 Score = 155 bits (78), Expect = 1e-34 Identities = 242/296 (81%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 130 gcgacggtggccagcgccgtggcgtccctcaccaagtggatgcgcgagcgcgcggcggag 189 |||||||||||| | |||||||| | || |||||||||||||| ||||||||||||| Sbjct: 107 gcgacggtggccggagccgtggccgcgctgttcaagtggatgcgcgcgcgcgcggcggag 166 Query: 190 gcgccgccgaacctgctcgccgacgagcgcgacgacctcgtcgtgctccagctctcgctc 249 || || |||||||| |||||||||||||||||||||||| | | ||||||||||| ||| Sbjct: 167 gctccaccgaacctcctcgccgacgagcgcgacgacctcctgctcctccagctctccctc 226 Query: 250 cgccgcgtgccgcccaagcccaccaccaagccgcacctgctcccgctcccgcaccccg-- 307 |||||| | |||||| || || |||||||||| ||| || |||||||| ||||||| Sbjct: 227 cgccgcatcccgccctcaccgacgaccaagccgcgcctccttccgctcccccaccccgtc 286 Query: 308 -tcgtcgcccactcggccgcctccgtctgcgtcatctccgacgaccgcgccggctccggc 366 ||||| || | | | |||||| ||||||||||||||||||||||| || ||| || Sbjct: 287 atcgtccccggcgagtcggcctccatctgcgtcatctccgacgaccgccccaagtcccgc 346 Query: 367 tcccccgccgctaccgccatcctcgacgcggccaggtccctcaagctccccgtctc 422 ||||| ||||| ||| | | ||||||||| ||||||||| | | ||||||||||| Sbjct: 347 tccccggccgcctccgacctgctcgacgcgtccaggtcccaccacctccccgtctc 402
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 170 tgcgcgagcgcgcggcggaggcg 192 ||||||||||||||||||||||| Sbjct: 585164 tgcgcgagcgcgcggcggaggcg 585186
>ref|NM_208889.1| Eremothecium gossypii ACR134Wp (ACR134W), mRNA Length = 1455 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 170 tgcgcgagcgcgcggcggaggcg 192 ||||||||||||||||||||||| Sbjct: 722 tgcgcgagcgcgcggcggaggcg 744
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 210 cgacgagcgcgacgacctcgtcg 232 ||||||||||||||||||||||| Sbjct: 329734 cgacgagcgcgacgacctcgtcg 329756 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cgccgacgagcgcgacgacc 226 |||||||||||||||||||| Sbjct: 2759863 cgccgacgagcgcgacgacc 2759882
>ref|XM_582211.2| PREDICTED: Bos taurus similar to Rho guanine nucleotide exchange factor 4 isoform a (LOC505852), mRNA Length = 7266 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 278 agccgcacctgctcccgctccc 299 |||||||||||||||||||||| Sbjct: 6002 agccgcacctgctcccgctccc 5981
>ref|XM_848970.1| PREDICTED: Canis familiaris similar to T-cell death associated gene (LOC611312), mRNA Length = 1032 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 280 ccgcacctgctcccgctcccgcaccc 305 ||||||| |||||||||||||||||| Sbjct: 577 ccgcacccgctcccgctcccgcaccc 602
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Minus Query: 204 gctcgccgacgagcgcgacgacctcgtcgtgctc 237 |||| ||||| |||||| |||||||||||||||| Sbjct: 2229300 gctctccgaccagcgcgtcgacctcgtcgtgctc 2229267
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 gtgccgcgcgcgacggtggcc 141 ||||||||||||||||||||| Sbjct: 496447 gtgccgcgcgcgacggtggcc 496427
>ref|XM_510108.1| PREDICTED: Pan troglodytes similar to Protein tyrosine phosphatase, non-receptor type 21 (Protein-tyrosine phosphatase D1) (LOC453091), mRNA Length = 1212 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 gcacctgctcccgctcccgca 302 ||||||||||||||||||||| Sbjct: 72 gcacctgctcccgctcccgca 52
>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene cluster, complete sequence Length = 84868 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 cgacgagcgcgacgacctcgtcgtg 234 ||||||||||||||| ||||||||| Sbjct: 3113 cgacgagcgcgacgagctcgtcgtg 3137
>emb|AJ868401.1| Aeromonas sp. LMG 17321 partial gyrB gene for DNA gyrase subunit B, type strain LMG 17321 Length = 1113 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 cctgctcgccgacgagcgcga 221 ||||||||||||||||||||| Sbjct: 261 cctgctcgccgacgagcgcga 281
>gb|AF126472.1|AF126472 Cellulomonas fimi mannosidase gene, complete cds Length = 2529 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 207 cgccgacgagcgcgacgacctcgtc 231 |||||||||||||| |||||||||| Sbjct: 234 cgccgacgagcgcgtcgacctcgtc 258
>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and ORF19 Length = 86080 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 cgacgagcgcgacgacctcgtcgtg 234 ||||||||||||||| ||||||||| Sbjct: 3031 cgacgagcgcgacgagctcgtcgtg 3055
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 agccgcacctgctcccgctcccgca 302 ||||||||| ||||||||||||||| Sbjct: 1183830 agccgcaccggctcccgctcccgca 1183854
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccgacgagcgcgacgacct 227 |||||||||||||||||||| Sbjct: 32065 gccgacgagcgcgacgacct 32084
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 cgcacctgctcccgctcccgcacc 304 |||||| ||||||||||||||||| Sbjct: 2177398 cgcaccggctcccgctcccgcacc 2177421
>ref|XM_482943.1| Oryza sativa (japonica cultivar-group), mRNA Length = 591 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 gaggtgccgcgcgcgacggtggcc 141 ||||||||||||||| |||||||| Sbjct: 481 gaggtgccgcgcgcggcggtggcc 504
>ref|XM_466038.1| Oryza sativa (japonica cultivar-group), mRNA Length = 423 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcgcggcggaggcgccgccg 198 |||||||||||||||||||| Sbjct: 134 gcgcggcggaggcgccgccg 153
>ref|XM_477673.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1448 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcgagcgcgcggcggaggcg 192 |||||||||||||||||||| Sbjct: 272 gcgagcgcgcggcggaggcg 291
>gb|AC151486.1| Pan troglodytes chromosome X clone PTB-029D14 map human ortholog q28, complete sequence Length = 154019 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 351 ccgcgccggctccggctcccccgccgct 378 ||||||||||||| || ||||||||||| Sbjct: 118365 ccgcgccggctccagcgcccccgccgct 118338
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gatgcgcgagcgcgcggcgg 187 |||||||||||||||||||| Sbjct: 975566 gatgcgcgagcgcgcggcgg 975585
>gb|AC148650.1| Pan troglodytes chromosome X clone PTB-044F10 map human ortholog q28, complete sequence Length = 153826 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 351 ccgcgccggctccggctcccccgccgct 378 ||||||||||||| || ||||||||||| Sbjct: 11807 ccgcgccggctccagcgcccccgccgct 11780
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 cgcgcgcgacggtggccagcgccg 148 |||||||| ||||||||||||||| Sbjct: 560720 cgcgcgcggcggtggccagcgccg 560697
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 cgagcgcgacgacctcgtcg 232 |||||||||||||||||||| Sbjct: 1947344 cgagcgcgacgacctcgtcg 1947363 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 caccaagtggatgcgcgagcgcgc 182 |||||||||| ||||||||||||| Sbjct: 857344 caccaagtggctgcgcgagcgcgc 857321
>ref|XM_818231.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.26.0880) partial mRNA Length = 681 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ccaccaagccgcacctgctc 291 |||||||||||||||||||| Sbjct: 434 ccaccaagccgcacctgctc 415
>gb|U52111.3| Homo sapiens chromosome X clone Qc-7G6, QLL-F1720, QLL-C1335, Qc-8B7, Qc-11H12, Qc-7F6, QLL-E153, Qc-10E8, Qc-10B7 map q28, complete sequence Length = 247592 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 351 ccgcgccggctccggctcccccgccgct 378 ||||||||||||| || ||||||||||| Sbjct: 214244 ccgcgccggctccagcgcccccgccgct 214217
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 gcgagcgcgcggcggaggcgccgc 196 |||||||| ||||||||||||||| Sbjct: 2592738 gcgagcgctcggcggaggcgccgc 2592761
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gccgacgagcgcgacgacct 227 |||||||||||||||||||| Sbjct: 85616 gccgacgagcgcgacgacct 85597
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tccggctcccccgccgctac 380 |||||||||||||||||||| Sbjct: 232659 tccggctcccccgccgctac 232678
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gatgcgcgagcgcgcggcgg 187 |||||||||||||||||||| Sbjct: 818108 gatgcgcgagcgcgcggcgg 818127
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 acctgctcgccgacgagcgc 219 |||||||||||||||||||| Sbjct: 26428 acctgctcgccgacgagcgc 26447
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 acctgctcgccgacgagcgcgacg 223 ||||||||||||||||| |||||| Sbjct: 220988 acctgctcgccgacgagagcgacg 220965 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gccgcacctgctcccgctcc 298 |||||||||||||||||||| Sbjct: 84194 gccgcacctgctcccgctcc 84175
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 tcgccgacgagcgcgacgacctcg 229 |||||||||||||| ||||||||| Sbjct: 193790 tcgccgacgagcgctacgacctcg 193767
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cccgcaccccgtcgtcgccc 316 |||||||||||||||||||| Sbjct: 1811905 cccgcaccccgtcgtcgccc 1811886
>gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone BACR06I01, complete sequence Length = 175167 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 gccgcacctgctcccgctcccgca 302 |||||||| ||||||||||||||| Sbjct: 92066 gccgcacccgctcccgctcccgca 92043
>ref|XM_393327.2| PREDICTED: Apis mellifera similar to GA15167-PA (LOC409836), mRNA Length = 4569 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gcacctgctcccgctcccgc 301 |||||||||||||||||||| Sbjct: 456 gcacctgctcccgctcccgc 437
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gctcccgctcccgcaccccgtcgt 311 |||||||||||||| ||||||||| Sbjct: 17452756 gctcccgctcccgctccccgtcgt 17452733
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 gaggtgccgcgcgcgacggtggcc 141 ||||||||||||||| |||||||| Sbjct: 23494722 gaggtgccgcgcgcggcggtggcc 23494745
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcgagcgcgcggcggaggcg 192 |||||||||||||||||||| Sbjct: 13014436 gcgagcgcgcggcggaggcg 13014417
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcgcggcggaggcgccgccg 198 |||||||||||||||||||| Sbjct: 19222773 gcgcggcggaggcgccgccg 19222792
>gb|AC108030.4| Homo sapiens BAC clone RP11-100C9 from 4, complete sequence Length = 147091 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 acctgctcccgctcccgcaccccg 307 ||||| |||||||||||||||||| Sbjct: 88031 acctgttcccgctcccgcaccccg 88054
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete sequence Length = 134058 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gctcccgctcccgcaccccgtcgt 311 |||||||||||||| ||||||||| Sbjct: 81751 gctcccgctcccgctccccgtcgt 81728
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgcgcgagcgcgcggcggag 189 |||||||||||||||||||| Sbjct: 3359249 tgcgcgagcgcgcggcggag 3359230 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 gcgagcgcgcggcggaggcgccgc 196 |||||||||| ||||||||||||| Sbjct: 1307564 gcgagcgcgccgcggaggcgccgc 1307587
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 cgagcgcgacgacctcgtcg 232 |||||||||||||||||||| Sbjct: 2721303 cgagcgcgacgacctcgtcg 2721284
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cctgctcgccgacgagcgcg 220 |||||||||||||||||||| Sbjct: 774854 cctgctcgccgacgagcgcg 774873
>dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077F02 Length = 172442 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gcgagcgcgcggcggaggcg 192 |||||||||||||||||||| Sbjct: 88733 gcgagcgcgcggcggaggcg 88714
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcgcggcggaggcgccgccg 198 |||||||||||||||||||| Sbjct: 121022 gcgcggcggaggcgccgccg 121041
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 gaggtgccgcgcgcgacggtggcc 141 ||||||||||||||| |||||||| Sbjct: 86137 gaggtgccgcgcgcggcggtggcc 86160
>dbj|AK069214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010K01, full insert sequence Length = 839 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcgcggcggaggcgccgccg 198 |||||||||||||||||||| Sbjct: 402 gcgcggcggaggcgccgccg 383
>dbj|AK067835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121M11, full insert sequence Length = 1448 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gcgagcgcgcggcggaggcg 192 |||||||||||||||||||| Sbjct: 272 gcgagcgcgcggcggaggcg 291
>dbj|AK062836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G12, full insert sequence Length = 821 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gctcccgctcccgcaccccgtcgt 311 |||||||||||||| ||||||||| Sbjct: 33 gctcccgctcccgctccccgtcgt 10
>dbj|AK060671.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-G06, full insert sequence Length = 1505 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gcgcggcggaggcgccgccg 198 |||||||||||||||||||| Sbjct: 998 gcgcggcggaggcgccgccg 979
>gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete sequence Length = 265413 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 gccgcacctgctcccgctcccgca 302 |||||||| ||||||||||||||| Sbjct: 137119 gccgcacccgctcccgctcccgca 137096
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggatgcgcgagcgcgcggcg 186 |||||||||||||||||||| Sbjct: 1196580 ggatgcgcgagcgcgcggcg 1196599 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gcgcggcggaggcgccgccg 198 |||||||||||||||||||| Sbjct: 610907 gcgcggcggaggcgccgccg 610926
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gctcccgctcccgcaccccgtcgt 311 |||||||||||||| ||||||||| Sbjct: 17461796 gctcccgctcccgctccccgtcgt 17461773
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cggccgcctccgtctgcgtc 339 |||||||||||||||||||| Sbjct: 142407 cggccgcctccgtctgcgtc 142388
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcccgcaccccgtcgtcg 313 |||||||||||||||||||| Sbjct: 2320002 gctcccgcaccccgtcgtcg 2319983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,996,658 Number of Sequences: 3902068 Number of extensions: 2996658 Number of successful extensions: 78575 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73781 Number of HSP's gapped (non-prelim): 4791 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
