ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
3emb|AL845346.4|CNS08CB8 Oryza sativa chromosome 12, . BAC OSJNBa... 62 2e-06
4emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 62 2e-06
5emb|BX119911.6| Mouse DNA sequence from clone RP23-207N15 on chr... 44 0.40
6gb|AC159306.2| Mus musculus BAC clone RP23-206B2 from chromosome... 44 0.40
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
8gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genom... 42 1.6
9emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on ch... 42 1.6
10emb|AL355526.9| Human DNA sequence from clone RP11-152L7 on chro... 42 1.6
11gb|AC163902.2| Mus musculus BAC clone RP23-479B18 from chromosom... 42 1.6
12emb|AL645702.14| Mouse DNA sequence from clone RP23-163J17 on ch... 42 1.6
13emb|AL645951.20| Mouse DNA sequence from clone DN-29B18 on chrom... 42 1.6
14gb|AC139319.6| Mus musculus BAC clone RP24-439B16 from chromosom... 42 1.6
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16emb|BX649390.12| Zebrafish DNA sequence from clone DKEY-261L2 in... 42 1.6
17dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: R... 42 1.6
18dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: R... 42 1.6
19gb|AC154769.2| Mus musculus BAC clone RP24-447K12 from 17, compl... 42 1.6
20emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on ch... 42 1.6
21gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
22ref|NM_127193.1| Arabidopsis thaliana DRD1; ATP binding / ATP-de... 40 6.2
23ref|NM_188271.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
24gb|AC125670.4| Rattus norvegicus BAC CH230-113E22 (Children's H... 40 6.2
25gb|AC106595.9| Rattus norvegicus 7 BAC CH230-237N20 (Children's ... 40 6.2
26gb|AC135670.3| Mus musculus BAC clone RP23-370D21 from chromosom... 40 6.2
27gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome... 40 6.2
28gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosom... 40 6.2
29gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, com... 40 6.2
30gb|AC122428.4| Mus musculus BAC clone RP24-175C20 from chromosom... 40 6.2
31gb|AC114828.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
32gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, comple... 40 6.2
33gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
34emb|AL450384.34| Human DNA sequence from clone RP11-383B4 on chr... 40 6.2
35gb|AC009000.6| Homo sapiens chromosome 19 clone LLNLR-276C11, co... 40 6.2
36gb|AC007047.7| Arabidopsis thaliana chromosome 2 clone F16F14 ma... 40 6.2
37gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence 40 6.2
38gb|AY075100.1| Cavia porcellus potassium channel KCNK7 (KCNK7) g... 40 6.2
39gb|AC009262.5| Homo sapiens chromosome 7 clone RP11-179B11, comp... 40 6.2
40gb|AC005686.1|AC005686 Homo sapiens clone GS1-234F24 from 7p14-1... 40 6.2
41gb|AC159258.2| Mus musculus BAC clone RP24-87A4 from chromosome ... 40 6.2
42dbj|AK084920.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 40 6.2
43dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
45ref|NM_001002074.1| Danio rerio zgc:86725 (zgc:86725), mRNA 40 6.2
46dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
47dbj|AB083274.2| Mus musculus gene for U-box-type ubiquitin ligas... 40 6.2
48gb|AC004755.2|AC004755 Homo sapiens chromosome 19, fosmid FOS375... 40 6.2
49gb|AC139426.2| Homo sapiens chromosome 15, clone RP13-395E19, co... 40 6.2
50gb|AC135731.6| Homo sapiens chromosome 15, clone RP11-261B23, co... 40 6.2
51gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, co... 40 6.2
52gb|AC134437.3| Mus musculus BAC clone RP24-450H12 from chromosom... 40 6.2
53emb|AL929149.8| Mouse DNA sequence from clone RP23-93B24 on chro... 40 6.2
54dbj|AK068509.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
55emb|AL358275.4|CNS05TDY Human chromosome 14 DNA sequence BAC R-6... 40 6.2
56gb|DQ331852.1| Synthetic construct Saccharomyces cerevisiae clon... 40 6.2
57gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
58gb|BC071401.1| Danio rerio zgc:86725, mRNA (cDNA clone MGC:86725... 40 6.2
59gb|AC133515.3| Mus musculus BAC clone RP23-236E15 from 1, comple... 40 6.2
60gb|U28374.1|YSCD9740 Saccharomyces cerevisiae chromosome IV cosm... 40 6.2
61gb|U34832.1|SCU34832 Saccharomyces cerevisiae suppressor of mar1... 40 6.2
62gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome... 40 6.2
63emb|AL844578.4| Mouse DNA sequence from clone RP23-346D23 on chr... 40 6.2
64emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chr... 40 6.2 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                   
Query: 248      tactggctcatt-ctcccttagctgctaagaaaggccacataaattataaa 297
                |||||||||||| ||| ||||||||||||| || |||||||||||||||||
Sbjct: 23492363 tactggctcatttctcacttagctgctaaggaatgccacataaattataaa 23492413
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                   
Query: 248      tactggctcatt-ctcccttagctgctaagaaaggccacataaattataaa 297
                |||||||||||| ||| ||||||||||||| || |||||||||||||||||
Sbjct: 23420554 tactggctcatttctcacttagctgctaaggaatgccacataaattataaa 23420604
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>emb|AL845346.4|CNS08CB8 Oryza sativa chromosome 12, . BAC OSJNBa0018E22 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 69273

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                
Query: 248   tactggctcatt-ctcccttagctgctaagaaaggccacataaattataaa 297
             |||||||||||| ||| ||||||||||||| || |||||||||||||||||
Sbjct: 12911 tactggctcatttctcacttagctgctaaggaatgccacataaattataaa 12961
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>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 162261

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 248  tactggctcatt-ctcccttagctgctaagaaaggccacataaattataaa 297
            |||||||||||| ||| ||||||||||||| || |||||||||||||||||
Sbjct: 9796 tactggctcatttctcacttagctgctaaggaatgccacataaattataaa 9746
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>emb|BX119911.6| Mouse DNA sequence from clone RP23-207N15 on chromosome 11 Contains
             five novel genes, the gene for the ortholog of human
             PITPNM family member 3 PITPNM3 and three CpG islands,
             complete sequence
          Length = 194732

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 37    tcccctccccctccattgctgt 58
             ||||||||||||||||||||||
Sbjct: 77675 tcccctccccctccattgctgt 77696
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>gb|AC159306.2| Mus musculus BAC clone RP23-206B2 from chromosome 14, complete sequence
          Length = 194660

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 29     tcatctcctcccctccccctcc 50
              ||||||||||||||||||||||
Sbjct: 134409 tcatctcctcccctccccctcc 134388
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 32       tctcctcccctccccctccat 52
                |||||||||||||||||||||
Sbjct: 24148063 tctcctcccctccccctccat 24148043



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 32      tctcctcccctccccctcca 51
               ||||||||||||||||||||
Sbjct: 8423853 tctcctcccctccccctcca 8423872
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>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete
             sequence
          Length = 140980

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    tctcctcccctccccctccat 52
             |||||||||||||||||||||
Sbjct: 75769 tctcctcccctccccctccat 75789
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>emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on chromosome 1, complete
             sequence
          Length = 250586

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 29    tcatctcctcccctccccctccatt 53
             |||||||||||||||| ||||||||
Sbjct: 39692 tcatctcctcccctcctcctccatt 39668
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>emb|AL355526.9| Human DNA sequence from clone RP11-152L7 on chromosome 1 Contains two
            novel genes (IMAGE:4831124) and a CpG island, complete
            sequence
          Length = 142179

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 433  caccatggttttctcctcctt 453
            |||||||||||||||||||||
Sbjct: 2855 caccatggttttctcctcctt 2875
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>gb|AC163902.2| Mus musculus BAC clone RP23-479B18 from chromosome 17, complete sequence
          Length = 190411

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 29     tcatctcctcccctccccctc 49
              |||||||||||||||||||||
Sbjct: 151415 tcatctcctcccctccccctc 151435
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>emb|AL645702.14| Mouse DNA sequence from clone RP23-163J17 on chromosome 1 Contains a
            ribosomal protein S2 (Rps2) pseudogene, a tigger
            transposable element derived 1 (TIGD1) pseudogene and a
            ribosomal protein L17 (Rpl17) pseudogene, complete
            sequence
          Length = 205103

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 29   tcatctcctcccctccccctccatt 53
            |||||||||||||||| ||||||||
Sbjct: 8485 tcatctcctcccctcctcctccatt 8509
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>emb|AL645951.20| Mouse DNA sequence from clone DN-29B18 on chromosome 1 Contains a
             ribosomal protein L17 (RPL17) pseudogene and a tigger
             transposable element derived 1 (TIGD1) pseudogene,
             complete sequence
          Length = 129519

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 29    tcatctcctcccctccccctccatt 53
             |||||||||||||||| ||||||||
Sbjct: 68002 tcatctcctcccctcctcctccatt 68026
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>gb|AC139319.6| Mus musculus BAC clone RP24-439B16 from chromosome 12, complete sequence
          Length = 189003

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     catctcctcccctccccctcc 50
              |||||||||||||||||||||
Sbjct: 106835 catctcctcccctccccctcc 106815
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 32       tctcctcccctccccctccat 52
                |||||||||||||||||||||
Sbjct: 24064997 tctcctcccctccccctccat 24064977



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 32      tctcctcccctccccctcca 51
               ||||||||||||||||||||
Sbjct: 8421688 tctcctcccctccccctcca 8421707
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>emb|BX649390.12| Zebrafish DNA sequence from clone DKEY-261L2 in linkage group 2,
             complete sequence
          Length = 184594

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   ttcttctttcactcgtcttct 373
             |||||||||||||||||||||
Sbjct: 51742 ttcttctttcactcgtcttct 51722
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>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete
             sequence
          Length = 255195

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 342   cccctcctctcttcttctttc 362
             |||||||||||||||||||||
Sbjct: 62450 cccctcctctcttcttctttc 62470
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>dbj|AP006505.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-266A3, complete
              sequence
          Length = 199759

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 342    cccctcctctcttcttctttc 362
              |||||||||||||||||||||
Sbjct: 181450 cccctcctctcttcttctttc 181470
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>gb|AC154769.2| Mus musculus BAC clone RP24-447K12 from 17, complete sequence
          Length = 157247

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     tcatctcctcccctccccctc 49
              |||||||||||||||||||||
Sbjct: 155371 tcatctcctcccctccccctc 155351
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>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete
              sequence
          Length = 173824

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 342    cccctcctctcttcttctttc 362
              |||||||||||||||||||||
Sbjct: 105466 cccctcctctcttcttctttc 105446
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>gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0085M22, complete sequence
          Length = 145104

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tctcctcccctccccctcca 51
             ||||||||||||||||||||
Sbjct: 47396 tctcctcccctccccctcca 47415
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>ref|NM_127193.1| Arabidopsis thaliana DRD1; ATP binding / ATP-dependent helicase/
           DNA binding / helicase/ nucleic acid binding AT2G16390
           (DRD1) mRNA, complete cds
          Length = 2667

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 365 tcgtcttctcagcttcaaac 384
           ||||||||||||||||||||
Sbjct: 292 tcgtcttctcagcttcaaac 273
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>ref|NM_188271.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1188

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 27 catcatctcctcccctccccctcc 50
          |||||||||||||||||| |||||
Sbjct: 36 catcatctcctcccctcctcctcc 13
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>gb|AC125670.4| Rattus norvegicus  BAC CH230-113E22 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 103836

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tctcctcccctccccctcca 51
             ||||||||||||||||||||
Sbjct: 32720 tctcctcccctccccctcca 32739
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>gb|AC106595.9| Rattus norvegicus 7 BAC CH230-237N20 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 214961

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 52     ttgctgtgcaggatgtttccttag 75
              ||||||||||| ||||||||||||
Sbjct: 137104 ttgctgtgcagaatgtttccttag 137081
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>gb|AC135670.3| Mus musculus BAC clone RP23-370D21 from chromosome 19, complete
             sequence
          Length = 182582

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   tgcccctcctctcttcttct 359
             ||||||||||||||||||||
Sbjct: 14152 tgcccctcctctcttcttct 14171
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>gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome 5, complete sequence
          Length = 186986

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ctctctctttagatctctgt 226
              ||||||||||||||||||||
Sbjct: 125222 ctctctctttagatctctgt 125241
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>gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosome 1, complete sequence
          Length = 182261

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tcctcccctccccctccatt 53
             ||||||||||||||||||||
Sbjct: 18981 tcctcccctccccctccatt 18962
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>gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, complete sequence
          Length = 179508

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   tggttttctcctccttcccg 457
             ||||||||||||||||||||
Sbjct: 12002 tggttttctcctccttcccg 11983
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>gb|AC122428.4| Mus musculus BAC clone RP24-175C20 from chromosome 9, complete sequence
          Length = 185902

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    tctcctcccctccccctcca 51
             ||||||||||||||||||||
Sbjct: 93810 tctcctcccctccccctcca 93791
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>gb|AC114828.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0038L23,
              complete sequence
          Length = 124582

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    tcctctcttcttctttcact 365
              ||||||||||||||||||||
Sbjct: 119648 tcctctcttcttctttcact 119629
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>gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, complete sequence
          Length = 209762

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   ccctcctctcttcttctttc 362
             ||||||||||||||||||||
Sbjct: 21400 ccctcctctcttcttctttc 21419
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>gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0085C16, complete sequence
          Length = 156069

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   tcctctcttcttctttcact 365
             ||||||||||||||||||||
Sbjct: 47839 tcctctcttcttctttcact 47820
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>emb|AL450384.34| Human DNA sequence from clone RP11-383B4 on chromosome 10 Contains the
             3' end of the CACNB2 gene for calcium channel
             voltage-dependent beta 2 subunit, the 5' end of a novel
             gene, a novel gene and the 3' end of a novel gene
             (LOC221078) (FLJ23743), complete sequence
          Length = 124571

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   ggtactggctcattctccct 265
             ||||||||||||||||||||
Sbjct: 39085 ggtactggctcattctccct 39066
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>gb|AC009000.6| Homo sapiens chromosome 19 clone LLNLR-276C11, complete sequence
          Length = 37107

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    tcatctcctcccctccccct 48
             ||||||||||||||||||||
Sbjct: 10921 tcatctcctcccctccccct 10940
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>gb|AC007047.7| Arabidopsis thaliana chromosome 2 clone F16F14 map mi398, complete
             sequence
          Length = 114418

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   tcgtcttctcagcttcaaac 384
             ||||||||||||||||||||
Sbjct: 47860 tcgtcttctcagcttcaaac 47879
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>gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence
          Length = 174691

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   tcttctcagcttcaaactct 387
             ||||||||||||||||||||
Sbjct: 76072 tcttctcagcttcaaactct 76053
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>gb|AY075100.1| Cavia porcellus potassium channel KCNK7 (KCNK7) gene, complete cds
          Length = 5865

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  ctcctcccctccccctccat 52
           ||||||||||||||||||||
Sbjct: 891 ctcctcccctccccctccat 872
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>gb|AC009262.5| Homo sapiens chromosome 7 clone RP11-179B11, complete sequence
          Length = 149255

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 105   gcttgctcctactgttagggtttggccaatca 136
             |||||||||||||| |||| | ||||||||||
Sbjct: 94849 gcttgctcctactggtaggttgtggccaatca 94818
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>gb|AC005686.1|AC005686 Homo sapiens clone GS1-234F24 from 7p14-15, complete sequence
          Length = 141387

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 105  gcttgctcctactgttagggtttggccaatca 136
            |||||||||||||| |||| | ||||||||||
Sbjct: 4968 gcttgctcctactggtaggttgtggccaatca 4999
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>gb|AC159258.2| Mus musculus BAC clone RP24-87A4 from chromosome 13, complete sequence
          Length = 221108

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    tctcaccatggttttctcct 449
              ||||||||||||||||||||
Sbjct: 168381 tctcaccatggttttctcct 168400
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>dbj|AK084920.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430012B14 product:unclassifiable, full
            insert sequence
          Length = 3756

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 421  ctcatcacatctcaccatgg 440
            ||||||||||||||||||||
Sbjct: 3466 ctcatcacatctcaccatgg 3485
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 346      tcctctcttcttctttcact 365
                ||||||||||||||||||||
Sbjct: 22009843 tcctctcttcttctttcact 22009824
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 27      catcatctcctcccctccccctcc 50
               |||||||||||||||||| |||||
Sbjct: 5393315 catcatctcctcccctcctcctcc 5393338
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>ref|NM_001002074.1| Danio rerio zgc:86725 (zgc:86725), mRNA
          Length = 1381

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  cccctcctctcttcttctttcact 365
            ||||||||||||||||| ||||||
Sbjct: 1220 cccctcctctcttcttcattcact 1243
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>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1046G12
          Length = 163533

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 27     catcatctcctcccctccccctcc 50
              |||||||||||||||||| |||||
Sbjct: 144659 catcatctcctcccctcctcctcc 144682
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>dbj|AB083274.2| Mus musculus gene for U-box-type ubiquitin ligase UFD2a, complete cds
          Length = 13817

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 431  ctcaccatggttttctcctc 450
            ||||||||||||||||||||
Sbjct: 9255 ctcaccatggttttctcctc 9274
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>gb|AC004755.2|AC004755 Homo sapiens chromosome 19, fosmid FOS37502 (LLfos-27A6) and 3'
             overlapping PCR product, complete sequence
          Length = 41159

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tctcctcccctccccctcca 51
             ||||||||||||||||||||
Sbjct: 23317 tctcctcccctccccctcca 23336
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>gb|AC139426.2| Homo sapiens chromosome 15, clone RP13-395E19, complete sequence
          Length = 188448

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    tggttttctcctccttcccg 457
              ||||||||||||||||||||
Sbjct: 136180 tggttttctcctccttcccg 136161
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>gb|AC135731.6| Homo sapiens chromosome 15, clone RP11-261B23, complete sequence
          Length = 123089

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   tggttttctcctccttcccg 457
             ||||||||||||||||||||
Sbjct: 57058 tggttttctcctccttcccg 57077
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>gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, complete sequence
          Length = 199198

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    tggttttctcctccttcccg 457
              ||||||||||||||||||||
Sbjct: 139787 tggttttctcctccttcccg 139806
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>gb|AC134437.3| Mus musculus BAC clone RP24-450H12 from chromosome 19, complete sequence
          Length = 171749

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    tgcccctcctctcttcttct 359
              ||||||||||||||||||||
Sbjct: 117647 tgcccctcctctcttcttct 117666
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>emb|AL929149.8| Mouse DNA sequence from clone RP23-93B24 on chromosome 2, complete
              sequence
          Length = 153962

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    ccctcctctcttcttctttc 362
              ||||||||||||||||||||
Sbjct: 151248 ccctcctctcttcttctttc 151267
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>dbj|AK068509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154B19,
          full insert sequence
          Length = 1485

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 27 catcatctcctcccctccccctcc 50
          |||||||||||||||||| |||||
Sbjct: 99 catcatctcctcccctcctcctcc 76
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>emb|AL358275.4|CNS05TDY Human chromosome 14 DNA sequence BAC R-666E17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178651

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    gcaaggggagcaaaaggtgt 329
              ||||||||||||||||||||
Sbjct: 162234 gcaaggggagcaaaaggtgt 162215
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>gb|DQ331852.1| Synthetic construct Saccharomyces cerevisiae clone FLH202814.01X SUM1
            gene, complete sequence
          Length = 3189

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  cctcctctcttcttctttca 363
            ||||||||||||||||||||
Sbjct: 1731 cctcctctcttcttctttca 1712
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 346      tcctctcttcttctttcact 365
                ||||||||||||||||||||
Sbjct: 22319754 tcctctcttcttctttcact 22319735
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>gb|BC071401.1| Danio rerio zgc:86725, mRNA (cDNA clone MGC:86725 IMAGE:6897544),
            complete cds
          Length = 1381

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 342  cccctcctctcttcttctttcact 365
            ||||||||||||||||| ||||||
Sbjct: 1220 cccctcctctcttcttcattcact 1243
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>gb|AC133515.3| Mus musculus BAC clone RP23-236E15 from 1, complete sequence
          Length = 175639

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     tcctcccctccccctccatt 53
              ||||||||||||||||||||
Sbjct: 166549 tcctcccctccccctccatt 166530
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>gb|U28374.1|YSCD9740 Saccharomyces cerevisiae chromosome IV cosmid 9740
          Length = 43887

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   cctcctctcttcttctttca 363
             ||||||||||||||||||||
Sbjct: 30901 cctcctctcttcttctttca 30920
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>gb|U34832.1|SCU34832 Saccharomyces cerevisiae suppressor of mar1-1 (SUM1) gene, complete
            cds
          Length = 3612

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  cctcctctcttcttctttca 363
            ||||||||||||||||||||
Sbjct: 1962 cctcctctcttcttctttca 1943
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>gb|AC165087.4| Mus musculus BAC clone RP23-198K7 from chromosome 17, complete sequence
          Length = 211272

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     atctcctcccctccccctcc 50
              ||||||||||||||||||||
Sbjct: 111869 atctcctcccctccccctcc 111888
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>emb|AL844578.4| Mouse DNA sequence from clone RP23-346D23 on chromosome 4, complete
             sequence
          Length = 20714

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   actcctcatcacatctcacc 436
             ||||||||||||||||||||
Sbjct: 16454 actcctcatcacatctcacc 16473
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>emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chromosome 11, complete
             sequence
          Length = 148846

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ctcctcccctccccctccat 52
             ||||||||||||||||||||
Sbjct: 89804 ctcctcccctccccctccat 89785


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,213,098
Number of Sequences: 3902068
Number of extensions: 5213098
Number of successful extensions: 126650
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126023
Number of HSP's gapped (non-prelim): 627
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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