ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58c11 |
|---|---|
| Clone Library Name | barley_pub |
>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)| Length = 403 Score = 107 bits (266), Expect = 2e-23 Identities = 53/78 (67%), Positives = 59/78 (75%) Frame = +2 Query: 215 QYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMG 394 QYY Q I D +L I KT NL RLEAQRN LN+RVR+LR PGSYVGEV+K MG Sbjct: 18 QYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMG 77 Query: 395 KSKVLVKVHPEGKYVVDL 448 K+KVLVKVHPEGKYVVD+ Sbjct: 78 KNKVLVKVHPEGKYVVDI 95
>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)| Length = 461 Score = 106 bits (264), Expect = 3e-23 Identities = 52/82 (63%), Positives = 62/82 (75%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 LRQYYL I DLQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 15 LRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 74 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 M K KVLVKVHPEGK+VVD+DK Sbjct: 75 MDKKKVLVKVHPEGKFVVDVDK 96
>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 104 bits (259), Expect = 1e-22 Identities = 51/82 (62%), Positives = 62/82 (75%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 M K KVLVKVHPEGK+VVD+DK Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDK 101
>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding protein homolog 10) (TBP10) Length = 406 Score = 104 bits (259), Expect = 1e-22 Identities = 51/82 (62%), Positives = 62/82 (75%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 M K KVLVKVHPEGK+VVD+DK Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDK 101
>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1) Length = 406 Score = 104 bits (259), Expect = 1e-22 Identities = 51/82 (62%), Positives = 62/82 (75%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 M K KVLVKVHPEGK+VVD+DK Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDK 101
>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 104 bits (259), Expect = 1e-22 Identities = 51/82 (62%), Positives = 62/82 (75%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 M K KVLVKVHPEGK+VVD+DK Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDK 101
>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) Length = 406 Score = 104 bits (259), Expect = 1e-22 Identities = 51/82 (62%), Positives = 62/82 (75%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 M K KVLVKVHPEGK+VVD+DK Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDK 101
>PRS8_DROME (O18413) 26S protease regulatory subunit 8| Length = 405 Score = 103 bits (257), Expect = 2e-22 Identities = 52/81 (64%), Positives = 60/81 (74%) Frame = +2 Query: 212 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 391 R YY+Q I +LQL + K NL RL+AQRN+LN++VRMLR GSYVGEVVK M Sbjct: 20 RSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPM 79 Query: 392 GKSKVLVKVHPEGKYVVDLDK 454 K KVLVKVHPEGK+VVDLDK Sbjct: 80 DKKKVLVKVHPEGKFVVDLDK 100
>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)| Length = 402 Score = 101 bits (252), Expect = 8e-22 Identities = 51/81 (62%), Positives = 60/81 (74%) Frame = +2 Query: 212 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 391 R YY+ I +LQL + K+ NL RL+AQRN+LN++VRMLR GSYVGEVVK M Sbjct: 17 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPM 76 Query: 392 GKSKVLVKVHPEGKYVVDLDK 454 K KVLVKVHPEGK+VVDLDK Sbjct: 77 DKKKVLVKVHPEGKFVVDLDK 97
>PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (TAT-binding| protein homolog) Length = 414 Score = 96.3 bits (238), Expect = 3e-20 Identities = 45/82 (54%), Positives = 59/82 (71%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 L+ YY+ I + ++ +R K NL RL+AQRN+LN RVR L+ PGS+VGEVVKV Sbjct: 27 LKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKV 86 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 MGK KVL+K+ EGKY+VD+DK Sbjct: 87 MGKKKVLIKISQEGKYIVDIDK 108
>PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-binding protein| homolog 10) (Fragment) Length = 389 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/77 (57%), Positives = 59/77 (76%) Frame = +2 Query: 221 YLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKS 400 Y I +L++++ K +L RLEAQRN+LN+RVRML+ PGS+V EVVK+MGK+ Sbjct: 6 YCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKN 65 Query: 401 KVLVKVHPEGKYVVDLD 451 KVLVKV+PEGK+VVD+D Sbjct: 66 KVLVKVNPEGKFVVDID 82
>PRS8_YEAST (Q01939) 26S protease regulatory subunit 8 homolog (SUG1 protein)| (CIM3 protein) (TAT-binding protein TBY1) Length = 405 Score = 92.8 bits (229), Expect = 4e-19 Identities = 43/82 (52%), Positives = 59/82 (71%) Frame = +2 Query: 209 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 388 ++ Y+ Q I + +L+IR+KT N+ RLEAQRN LN +VR ++ PGSYVGEV+K+ Sbjct: 19 IKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKI 78 Query: 389 MGKSKVLVKVHPEGKYVVDLDK 454 + KVLVKV PEGKY+VD+ K Sbjct: 79 VSDKKVLVKVQPEGKYIVDVAK 100
>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 399 Score = 34.3 bits (77), Expect = 0.16 Identities = 20/75 (26%), Positives = 39/75 (52%) Frame = +2 Query: 218 YYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGK 397 Y + I L+LQ+R + RLE + + L S + LR P ++ G V++V+ + Sbjct: 21 YLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLR-------QPPAFAGTVIEVLDE 73 Query: 398 SKVLVKVHPEGKYVV 442 + +V+ + ++VV Sbjct: 74 DRAIVQNYNGPRFVV 88
>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 396 Score = 33.9 bits (76), Expect = 0.21 Identities = 20/75 (26%), Positives = 38/75 (50%) Frame = +2 Query: 218 YYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGK 397 Y + I L+LQ+R + RLE + + L S + LR P ++ G V++V+ Sbjct: 18 YLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLR-------QPPAFAGSVIEVLDD 70 Query: 398 SKVLVKVHPEGKYVV 442 + +V+ + ++VV Sbjct: 71 DRAIVQNYNGPRFVV 85
>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 399 Score = 33.5 bits (75), Expect = 0.28 Identities = 20/75 (26%), Positives = 38/75 (50%) Frame = +2 Query: 218 YYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGK 397 Y + I L+LQ+R + RLE + + L S + LR P ++ G V++V+ Sbjct: 21 YLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLR-------QPPAFAGTVIEVLDD 73 Query: 398 SKVLVKVHPEGKYVV 442 + +V+ + ++VV Sbjct: 74 DRAIVQNYNGPRFVV 88
>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 397 Score = 33.1 bits (74), Expect = 0.36 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = +2 Query: 227 QHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKV 406 + I L+LQ+RT LEA + L + LR P ++ G V++V+ + Sbjct: 22 RRIRQLELQVRT-------LEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERA 74 Query: 407 LVKVHPEGKYVV 442 +V+ + ++VV Sbjct: 75 IVQNYNGPRFVV 86
>MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smooth muscle)| Length = 1978 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/110 (19%), Positives = 45/110 (40%) Frame = +2 Query: 2 KSQKRTKRAGKESSPRTRADSSHLQSGGADEGAPMAAVAMDIAKXXXXXXXXXXXXXXXX 181 K ++++++ ++ + +SS L A+ A +A + +AK Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108 Query: 182 XXXXXXXXXLRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLR 331 +R+ HI DLQ + ++ N+ E Q+ DL+ + L+ Sbjct: 1109 SQKNNALKKIRELE-SHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)| (Proteasomal cap subunit) Length = 437 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/64 (23%), Positives = 31/64 (48%) Frame = +2 Query: 251 QIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPEG 430 Q++ + N+ LE + + ++ L+ G +GEV+K + + K +VK Sbjct: 73 QLKQRRQNIRDLEKLYDKTENDIKALQSI-------GQLIGEVMKELSEEKYIVKASSGP 125 Query: 431 KYVV 442 +Y+V Sbjct: 126 RYIV 129
>GCC2_MOUSE (Q8CHG3) GRIP and coiled-coil domain-containing protein 2 (Golgi| coiled coil protein GCC185) Length = 1679 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 227 QHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLR 331 +HI DL Q+R T RL + DL +R+ L+ Sbjct: 1036 RHIEDLTKQLRNSTCQYERLTSDNEDLLARIETLQ 1070 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,640,636 Number of Sequences: 219361 Number of extensions: 455824 Number of successful extensions: 1945 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1878 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1945 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
