>CS66_WHEAT (P46526) Cold shock protein CS66|
          Length = 469

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 43  PPLHASHQQTVAVHSHSENSRACTHTQLLRGAVGMGLEGEATAAVHG 183
           P  HA HQQT   +    ++   TH  L  G    G +G    A+HG
Sbjct: 86  PGGHADHQQTGGTYGQQGHTGTATHGTLATGGT-YGQQGHTGTAMHG 131

>J1I_HCMVA (P09711) Hypothetical protein HKRFX (J1I)|
          Length = 277

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -2

Query: 149 PMPTAPRNSWVCVQAREFSLCECTATVCWWDACRGGV 39
           P   AP   WVC  A  +    C A VCW   CRG V
Sbjct: 104 PRGPAPAVFWVCRGAAGWVCAGCVAGVCW--VCRGCV 138

>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 512

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = +2

Query: 8   PSAHPSRPGYIRLPYT---RPT-----NKPWPCTHTARTRELARIPSC 127
           P+  PSRP    +P T   RPT     N P P  H+  +R  AR PSC
Sbjct: 68  PAVRPSRPEDPGVPSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSC 115

>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 511

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = +2

Query: 8   PSAHPSRPGYIRLPYT---RPT-----NKPWPCTHTARTRELARIPSC 127
           P+  PSRP    +P T   RPT     N P P  H+  +R  AR PSC
Sbjct: 68  PAVRPSRPEDPGVPSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSC 115

>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 182 PCTAAVASPSSPMPT-APRNSWVCVQAREFSLCECTATVCWW--DACRGGVYNRAEM 21
           P + A A+P +P PT AP   + C +  E ++  C+    +W  D+  G +++R ++
Sbjct: 324 PASPATAAPPAPAPTSAPGLQFACARQPELAMMHCS----YWDHDSKTGALHSRLDL 376

>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 182 PCTAAVASPSSPMPT-APRNSWVCVQAREFSLCECTATVCWW--DACRGGVYNRAEM 21
           P + A A+P +P PT AP   + C +  E ++  C+    +W  D+  G +++R ++
Sbjct: 323 PASPATAAPPAPAPTSAPGLQFACARQPELAMMHCS----YWDHDSKTGALHSRLDL 375

>CPR3_CAEEL (P43507) Cathepsin B-like cysteine proteinase 3 precursor (EC|
           3.4.22.-) (Cysteine protease-related 3)
          Length = 370

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +1

Query: 232 YELGDADLAFRL-----HYLRGVYYYAAGEVVRGVTTKVL 336
           Y  G  + ++++     HY  GVY+Y +G++V G   K++
Sbjct: 250 YHYGPVEASYKVYEDFYHYKSGVYHYTSGKLVGGHAVKII 289

>FAT2_DROME (Q9VW71) Putative fat-like cadherin-related tumor suppressor homolog|
            precursor
          Length = 4705

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -2

Query: 173  AAVASPSSP----MPTAPRNSWVCVQAREFS--LCECTATVCWWDACRGGVYNRAEMGGR 12
            A    P SP    MP+     + CV  + FS   CE  ++ C  ++C  G++     GG+
Sbjct: 3884 ACSTDPCSPQRICMPSGSALGYQCVCPKGFSGTYCERKSSKCSNESCDMGLFTAVSFGGK 3943

Query: 11   TEA 3
            + A
Sbjct: 3944 SYA 3946

>ZN179_HUMAN (Q9ULX5) Zinc finger protein 179 (Brain finger protein) (RING|
           finger protein 112)
          Length = 632

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +1

Query: 49  LHASHQQTVAVHSHSENSRACTHTQLLRGAVGMGLEGEATAAV 177
           L A  Q T      S   R C H   + GAVG GL G A   V
Sbjct: 525 LEAELQATAKAFMDSYTMRFCGHLAAVGGAVGAGLMGLAGGVV 567

>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21|
          Length = 2189

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 1    PASVRPPISARLYTPPLHASHQQTVAVHSHSENSRACTHTQLLRGAVGM----GLEGEAT 168
            P  V+P  +      P ++ H Q      H+ N++   HTQ ++ A  +    GL+G+  
Sbjct: 1855 PGQVQPQHAQHSRHTP-NSQHAQHTQQAQHARNAQQAHHTQQVQQAQHVQQPQGLQGQRH 1913

Query: 169  AAVHGH 186
              VHG+
Sbjct: 1914 GQVHGN 1919

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 12  PPTHLGPVIYASPTRVPPTNRGRALTQRELASLHAYP 122
           PP+ +G    ++PT  PP+ RG   + R     HAYP
Sbjct: 43  PPSSIGLSPPSAPTTTPPS-RGHVPSPRHAPPRHAYP 78

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid X|
            receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 29   PGYIRLPYTRPTNKPWPCTHTARTRELARIPS 124
            P  +RLP TRPT  P P   +++T   +  PS
Sbjct: 1031 PEGVRLPTTRPTRPPPPLIPSSKTTVASEKPS 1062

>IBP3_MOUSE (P47878) Insulin-like growth factor-binding protein 3 precursor|
           (IGFBP-3) (IBP-3) (IGF-binding protein 3)
          Length = 291

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = -2

Query: 188 RC-PCTAAVASPSSPMPTAPRNSWVCVQAREFSLCECTATVCWWDACRGGVY 36
           RC PC A   S  +P PTAP     C +      C C  T    +    GVY
Sbjct: 38  RCEPCDARAVSQCAPPPTAP----ACTELVREPGCGCCLTCALREGDACGVY 85

>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)|
          Length = 2440

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 29   PGYIRLPYTRPTNKPWPCTHTARTRELARIPS 124
            P  +RLP TRPT  P P   +++T   +  PS
Sbjct: 1019 PEGVRLPTTRPTRPPPPLIPSSKTTVASEKPS 1050

>HIS3_RHORT (Q2RTY3) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 143

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 125 SWVCVQAREFSLCECTATVCWWDACRGGVYNRAEMGGRTE 6
           +W+  +A E +L   T   C+W   RG ++ + E  G+T+
Sbjct: 41  AWMNREALEETLV--TGKACYWSRSRGRLWRKGESSGQTQ 78

>NUCH_NYCOV (Q5DUX5) NADH-ubiquinone oxidoreductase 49 kDa subunit (EC 1.6.5.3)|
           (EC 1.6.99.3) (NADH dehydrogenase subunit 7)
          Length = 412

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 37  YTPPLHASHQQTVAVHSHSENSRACTHTQLLR 132
           YT  L  +H   +AV      SR C  TQLLR
Sbjct: 88  YTTVLTQTHAYCLAVEQALAKSRLCIRTQLLR 119

>Y2656_MYCTU (P71953) Hypothetical protein Rv2656c/MT2733|
          Length = 130

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = -2

Query: 206 GTTVDSRCPCT-----AAVASPSSPMPTAPRN-SWVCVQAREFSLCECTATVCW 63
           G+    RCP T     A VA+PSS  PTA R  SW  V   E+      A V W
Sbjct: 6   GSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSV--HEYVAPTLAAAVEW 57

>GCSP_XANAC (Q8PN59) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 977

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 1   PASVRPPISARLYTPPLHASHQQTVAVHSHSENSRACT-HTQLLRGAVGMGLEGEAT 168
           P +V+  ++  L    +HA   QT A+H    NS +   H+  + G V     G A+
Sbjct: 717 PCAVKSHLAPYLPRAGIHAGEGQTAAIHGGGFNSESGNGHSSRIGGMVSAAAYGSAS 773


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,970,703
Number of Sequences: 219361
Number of extensions: 599977
Number of successful extensions: 2523
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2522
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)