ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58c07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473854.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1314 Score = 186 bits (94), Expect = 4e-44 Identities = 196/230 (85%) Strand = Plus / Plus Query: 167 cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtgg 226 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || Sbjct: 32 cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgggggagg 91 Query: 227 aggggtacgagctgggggacgcggacctggcgttccggctgcactacctgcgcggggtgt 286 ||||| || | ||||| |||||||| | | |||||||||||| ||||| | || Sbjct: 92 ccaactacgacctcgccgacgccgacctggcctacaagctgcactacctccgcggcgcgt 151 Query: 287 actactacgcggccggggaggtggtgcgcggggtgaccaccaaggtgctcaaggacccca 346 |||||||| | || || || | ||||||||| | |||| |||| |||||||||||||| Sbjct: 152 actactaccccgcgggcgacgccgtgcgcgggatcaccatcaagtcgctcaaggacccca 211 Query: 347 tgttcccctggctcgacgcctactaccccgtcgccggccgcgtccgccgc 396 |||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 212 tgttcccctggctcgacgcctacttccccgtcgccggccgcatccgccgc 261
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 186 bits (94), Expect = 4e-44 Identities = 196/230 (85%) Strand = Plus / Plus Query: 167 cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtgg 226 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || Sbjct: 11417 cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgggggagg 11476 Query: 227 aggggtacgagctgggggacgcggacctggcgttccggctgcactacctgcgcggggtgt 286 ||||| || | ||||| |||||||| | | |||||||||||| ||||| | || Sbjct: 11477 ccaactacgacctcgccgacgccgacctggcctacaagctgcactacctccgcggcgcgt 11536 Query: 287 actactacgcggccggggaggtggtgcgcggggtgaccaccaaggtgctcaaggacccca 346 |||||||| | || || || | ||||||||| | |||| |||| |||||||||||||| Sbjct: 11537 actactaccccgcgggcgacgccgtgcgcgggatcaccatcaagtcgctcaaggacccca 11596 Query: 347 tgttcccctggctcgacgcctactaccccgtcgccggccgcgtccgccgc 396 |||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 11597 tgttcccctggctcgacgcctacttccccgtcgccggccgcatccgccgc 11646
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 186 bits (94), Expect = 4e-44 Identities = 196/230 (85%) Strand = Plus / Plus Query: 167 cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtgg 226 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || Sbjct: 126710 cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgggggagg 126769 Query: 227 aggggtacgagctgggggacgcggacctggcgttccggctgcactacctgcgcggggtgt 286 ||||| || | ||||| |||||||| | | |||||||||||| ||||| | || Sbjct: 126770 ccaactacgacctcgccgacgccgacctggcctacaagctgcactacctccgcggcgcgt 126829 Query: 287 actactacgcggccggggaggtggtgcgcggggtgaccaccaaggtgctcaaggacccca 346 |||||||| | || || || | ||||||||| | |||| |||| |||||||||||||| Sbjct: 126830 actactaccccgcgggcgacgccgtgcgcgggatcaccatcaagtcgctcaaggacccca 126889 Query: 347 tgttcccctggctcgacgcctactaccccgtcgccggccgcgtccgccgc 396 |||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 126890 tgttcccctggctcgacgcctacttccccgtcgccggccgcatccgccgc 126939
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 186 bits (94), Expect = 4e-44 Identities = 196/230 (85%) Strand = Plus / Plus Query: 167 cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtgg 226 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || Sbjct: 31029337 cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgggggagg 31029396 Query: 227 aggggtacgagctgggggacgcggacctggcgttccggctgcactacctgcgcggggtgt 286 ||||| || | ||||| |||||||| | | |||||||||||| ||||| | || Sbjct: 31029397 ccaactacgacctcgccgacgccgacctggcctacaagctgcactacctccgcggcgcgt 31029456 Query: 287 actactacgcggccggggaggtggtgcgcggggtgaccaccaaggtgctcaaggacccca 346 |||||||| | || || || | ||||||||| | |||| |||| |||||||||||||| Sbjct: 31029457 actactaccccgcgggcgacgccgtgcgcgggatcaccatcaagtcgctcaaggacccca 31029516 Query: 347 tgttcccctggctcgacgcctactaccccgtcgccggccgcgtccgccgc 396 |||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 31029517 tgttcccctggctcgacgcctacttccccgtcgccggccgcatccgccgc 31029566 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 357 gctcgacgcctactaccccgtcgccggccgcgtccgcc 394 |||| |||||| |||||| |||||||||||||||||| Sbjct: 30644150 gctccacgccttctacccgctcgccggccgcgtccgcc 30644113
>emb|X88779.1|ZMGLOSSY Z.mays Glossy2 locus DNA Length = 6343 Score = 149 bits (75), Expect = 8e-33 Identities = 111/123 (90%) Strand = Plus / Plus Query: 172 gcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtggagggg 231 |||||||||||||||||||| || ||||||||||||||||||||||||| || || || Sbjct: 2194 gcggtgcacgggcaccggctctccacggtggtgccgagctcggtgacgggggaggtggac 2253 Query: 232 tacgagctgggggacgcggacctggcgttccggctgcactacctgcgcggggtgtactac 291 |||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct: 2254 tacgcgctggcggacgcggacctggccttcaagctgcactacctgcgcggggtgtactac 2313 Query: 292 tac 294 ||| Sbjct: 2314 tac 2316 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Plus Query: 323 ccaccaaggtgctcaaggaccccatgttcccctggctcgacgcctactaccccgtcgccg 382 |||||||||||||||||||||||||||| || ||||| |||| | ||| |||||| |||| Sbjct: 2336 ccaccaaggtgctcaaggaccccatgttaccgtggctggacgaccacttccccgtggccg 2395 Query: 383 gccgcgtccgccgc 396 |||||||||||||| Sbjct: 2396 gccgcgtccgccgc 2409
>gb|AY109951.1| Zea mays CL2305_1 mRNA sequence Length = 1707 Score = 111 bits (56), Expect = 2e-21 Identities = 99/115 (86%) Strand = Plus / Plus Query: 180 cgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtggaggggtacgagct 239 |||||||||||| || ||||||||||||||||||||||| || || |||| ||| Sbjct: 224 cgggcaccggctctccacggtggtgccgagctcggtgacnnnnnaggtggactacgcgct 283 Query: 240 gggggacgcggacctggcgttccggctgcactacctgcgcggggtgtactactac 294 || ||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 284 ggcggacgcggacctggccttcaagctgcactacctgcgcggggtgtactactac 338 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 323 ccaccaaggtgctcaaggaccccatgttcccctggctcgacg 364 |||||||||||||||||||||||||||| || ||||| |||| Sbjct: 358 ccaccaaggtgctcaaggaccccatgttaccgtggctggacg 399
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/44 (93%), Gaps = 2/44 (4%) Strand = Plus / Plus Query: 179 acgggcaccggctgtcgacggtg--gtgccgagctcggtgacgg 220 |||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 24096055 acgggcacgggctgtcgacggtggtgtgccgagctcggtgacgg 24096098 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 366 ctactaccccgtcgccggccgc 387 |||||||||||||||||||||| Sbjct: 24396471 ctactaccccgtcgccggccgc 24396450
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/44 (93%), Gaps = 2/44 (4%) Strand = Plus / Plus Query: 179 acgggcaccggctgtcgacggtg--gtgccgagctcggtgacgg 220 |||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 71877 acgggcacgggctgtcgacggtggtgtgccgagctcggtgacgg 71920
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 363 cgcctactaccccgtcgccggccgc 387 ||||||||||||||||||||||||| Sbjct: 125518 cgcctactaccccgtcgccggccgc 125494
>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0024M06, complete sequence Length = 51144 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 363 cgcctactaccccgtcgccggccgc 387 ||||||||||||||||||||||||| Sbjct: 49835 cgcctactaccccgtcgccggccgc 49859
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 363 cgcctactaccccgtcgccggccgc 387 ||||||||||||||||||||||||| Sbjct: 7666432 cgcctactaccccgtcgccggccgc 7666408
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 363 cgcctactaccccgtcgccggccgc 387 ||||||||||||||||||||||||| Sbjct: 7736519 cgcctactaccccgtcgccggccgc 7736495
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 132 cggcgcggtcggcatggggctcga 155 |||||||||||||||||||||||| Sbjct: 952111 cggcgcggtcggcatggggctcga 952134
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 365 cctactaccccgtcgccggccgc 387 ||||||||||||||||||||||| Sbjct: 212266 cctactaccccgtcgccggccgc 212288
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19 Length = 163558 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 365 cctactaccccgtcgccggccgc 387 ||||||||||||||||||||||| Sbjct: 77162 cctactaccccgtcgccggccgc 77184
>dbj|AK110874.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F10, full insert sequence Length = 1526 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 365 cctactaccccgtcgccggccgc 387 ||||||||||||||||||||||| Sbjct: 1173 cctactaccccgtcgccggccgc 1151
>dbj|AK103757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143E17, full insert sequence Length = 1677 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 365 cctactaccccgtcgccggccgc 387 ||||||||||||||||||||||| Sbjct: 248 cctactaccccgtcgccggccgc 270
>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0681G01, complete sequence Length = 184118 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 365 cctactaccccgtcgccggccgc 387 ||||||||||||||||||||||| Sbjct: 8276 cctactaccccgtcgccggccgc 8254
>ref|NM_192785.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1275 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccgc 387 |||||||||||||||||||||| Sbjct: 219 ctactaccccgtcgccggccgc 240
>ref|XM_473803.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Plus Query: 357 gctcgacgcctactaccccgtcgccggccgcgtccgcc 394 |||| |||||| |||||| |||||||||||||||||| Sbjct: 231 gctccacgccttctacccgctcgccggccgcgtccgcc 268
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 357 gctcgacgcctactaccccgtcgccggccgcgtccgcc 394 |||| |||||| |||||| |||||||||||||||||| Sbjct: 119858 gctccacgccttctacccgctcgccggccgcgtccgcc 119821
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 357 gctcgacgcctactaccccgtcgccggccgcgtccgcc 394 |||| |||||| |||||| |||||||||||||||||| Sbjct: 47881 gctccacgccttctacccgctcgccggccgcgtccgcc 47844
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 366 ctactaccccgtcgccggccgc 387 |||||||||||||||||||||| Sbjct: 142375 ctactaccccgtcgccggccgc 142354
>dbj|AK105836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E12, full insert sequence Length = 1511 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Plus Query: 357 gctcgacgcctactaccccgtcgccggccgcgtccgcc 394 |||| |||||| |||||| |||||||||||||||||| Sbjct: 241 gctccacgccttctacccgctcgccggccgcgtccgcc 278
>dbj|AK073495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F12, full insert sequence Length = 1526 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Plus Query: 357 gctcgacgcctactaccccgtcgccggccgcgtccgcc 394 |||| |||||| |||||| |||||||||||||||||| Sbjct: 256 gctccacgccttctacccgctcgccggccgcgtccgcc 293
>dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K19, full insert sequence Length = 1562 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccgc 387 |||||||||||||||||||||| Sbjct: 294 ctactaccccgtcgccggccgc 315
>dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D05, full insert sequence Length = 1556 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccgc 387 |||||||||||||||||||||| Sbjct: 260 ctactaccccgtcgccggccgc 281
>ref|XM_465703.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1404 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 242 acgccttctacccgctcgccggccgcgtccgcc 274
>ref|XM_465699.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 248 acgccttctacccgctcgccggccgcgtccgcc 280
>ref|NM_195345.1| Oryza sativa (japonica cultivar-group) putative acetyl transferase (OSJNBa0003P07.2), mRNA Length = 1458 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccg 386 ||||||||||||||||||||| Sbjct: 234 ctactaccccgtcgccggccg 254
>ref|NM_187279.1| Oryza sativa (japonica cultivar-group), mRNA Length = 402 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 374 ccgtcgccggccgcgtccgccgccc 398 ||||||||||||||| ||||||||| Sbjct: 369 ccgtcgccggccgcgaccgccgccc 345
>ref|NM_186258.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1428 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 tactaccccgtcgccggccgc 387 ||||||||||||||||||||| Sbjct: 232 tactaccccgtcgccggccgc 252
>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0003P07, complete sequence Length = 175116 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccg 386 ||||||||||||||||||||| Sbjct: 10276 ctactaccccgtcgccggccg 10296
>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence, complete sequence Length = 100285 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccg 386 ||||||||||||||||||||| Sbjct: 89981 ctactaccccgtcgccggccg 90001
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccg 386 ||||||||||||||||||||| Sbjct: 6292423 ctactaccccgtcgccggccg 6292443
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 374 ccgtcgccggccgcgtccgccgccc 398 ||||||||||||||| ||||||||| Sbjct: 17231713 ccgtcgccggccgcgaccgccgccc 17231689 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 tactaccccgtcgccggccgc 387 ||||||||||||||||||||| Sbjct: 2220860 tactaccccgtcgccggccgc 2220840 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gcgacggcggcggtgcacgg 182 |||||||||||||||||||| Sbjct: 17956681 gcgacggcggcggtgcacgg 17956700
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 16850146 acgccttctacccgctcgccggccgcgtccgcc 16850178 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 16826404 acgccttctacccgctcgccggccgcgtccgcc 16826436
>gb|AC175465.1| Ornithorhynchus anatinus BAC clone OABb-36D11 from chromosome unknown, complete sequence Length = 128273 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 gaccccatgttcccctggctc 360 ||||||||||||||||||||| Sbjct: 102758 gaccccatgttcccctggctc 102738
>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0640E12 Length = 167353 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 374 ccgtcgccggccgcgtccgccgccc 398 ||||||||||||||| ||||||||| Sbjct: 36838 ccgtcgccggccgcgaccgccgccc 36814
>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036H07 Length = 149797 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 51203 acgccttctacccgctcgccggccgcgtccgcc 51235 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 27461 acgccttctacccgctcgccggccgcgtccgcc 27493
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 98388 acgccttctacccgctcgccggccgcgtccgcc 98420 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 acgcctactaccccgtcgccggccgcgtccgcc 394 |||||| |||||| |||||||||||||||||| Sbjct: 74646 acgccttctacccgctcgccggccgcgtccgcc 74678
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 tactaccccgtcgccggccgc 387 ||||||||||||||||||||| Sbjct: 88762 tactaccccgtcgccggccgc 88742
>dbj|AK100207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042A21, full insert sequence Length = 2209 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccg 386 ||||||||||||||||||||| Sbjct: 658 ctactaccccgtcgccggccg 678
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ctactaccccgtcgccggccg 386 ||||||||||||||||||||| Sbjct: 6294009 ctactaccccgtcgccggccg 6294029
>gb|M59804.1|HEA28KDMP Haemophilus influenzae 28-kD membrane protein, complete cds Length = 1065 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ccaacaaaccgtggccgtgca 83 ||||||||||||||||||||| Sbjct: 514 ccaacaaaccgtggccgtgca 534
>emb|AL135914.25| Human DNA sequence from clone RP1-56L9 on chromosome 6 Contains a novel gene, the SOD2 gene for superoxide dismutase 2, mitochondrial, a pseudogene similar to heterogenous nuclear ribonucleoprotein H, the gene for Wilms' tumor 1-associating protein (KIAA0105) (WTAP), the ACAT2 gene for acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase), the TCP1 gene for t-complex 1 (CCT1, Ccta, D6S230E), the 5' end of the MRPL18 gene for mitochondrial ribosomal protein L18, and 4 CpG islands, complete sequence Length = 165802 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cggggaggtggtgcgcgggg 319 |||||||||||||||||||| Sbjct: 133631 cggggaggtggtgcgcgggg 133650
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ggtgcgcggggtgaccacca 328 |||||||||||||||||||| Sbjct: 2665968 ggtgcgcggggtgaccacca 2665987
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gcgcggcgcggtcggcatggggct 152 |||| ||||||||||||||||||| Sbjct: 279703 gcgccgcgcggtcggcatggggct 279680
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tcgccggccgcgtccgccgc 396 |||||||||||||||||||| Sbjct: 164016 tcgccggccgcgtccgccgc 164035
>dbj|AK097395.1| Homo sapiens cDNA FLJ40076 fis, clone TESTI2000874, highly similar to SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL PRECURSOR (EC 1.15.1.1) Length = 2555 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cggggaggtggtgcgcgggg 319 |||||||||||||||||||| Sbjct: 586 cggggaggtggtgcgcgggg 567
>gb|AC020897.7| Homo sapiens chromosome 19 clone CTC-400I9, complete sequence Length = 133704 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 caaggtgctcaaggacccca 346 |||||||||||||||||||| Sbjct: 74803 caaggtgctcaaggacccca 74822
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gtcggcatggggctcgaggg 158 |||||||||||||||||||| Sbjct: 1144588 gtcggcatggggctcgaggg 1144607
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 cgccggccgcgtccgccgcc 397 |||||||||||||||||||| Sbjct: 964606 cgccggccgcgtccgccgcc 964625
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cggcggcggtgcacgggcaccggc 190 ||||||||| |||||||||||||| Sbjct: 7979381 cggcggcggcgcacgggcaccggc 7979358
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 gcaccggctgtcgacggtgg 202 |||||||||||||||||||| Sbjct: 3423653 gcaccggctgtcgacggtgg 3423672
>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0683C09 Length = 185139 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gcgacggcggcggtgcacgg 182 |||||||||||||||||||| Sbjct: 183673 gcgacggcggcggtgcacgg 183692
>dbj|AP005515.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0064M11 Length = 164263 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gcgacggcggcggtgcacgg 182 |||||||||||||||||||| Sbjct: 34840 gcgacggcggcggtgcacgg 34859
>gb|M32613.1|KPNPULL K.pneumoniae pullulanase secretion operon genes pulC, pulD, pulE, pulF, pulG, pulH, pulI, pulJ, pulK, pulL, pulM, pulN, and pulO, complete cds Length = 13246 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 gctgtcgacggtggtgccga 208 |||||||||||||||||||| Sbjct: 5228 gctgtcgacggtggtgccga 5247
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 cggcggcggtgcacgggcaccggc 190 ||||||||| |||||||||||||| Sbjct: 7979262 cggcggcggcgcacgggcaccggc 7979239
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 cggcggcggtgcacgggcaccggc 190 ||||||||| |||||||||||||| Sbjct: 20789 cggcggcggcgcacgggcaccggc 20812 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,416,520 Number of Sequences: 3902068 Number of extensions: 2416520 Number of successful extensions: 48665 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47510 Number of HSP's gapped (non-prelim): 1149 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
