>emb|AL353135.32| Human DNA sequence from clone RP11-63L7 on chromosome 6 Contains the
             PROL2 gene for proline rich 2 (proline-rich protein with
             nuclear targeting signal), the gene for NB4
             apoptosis/differentiation related protein (PNAS-145), the
             gene for serine-arginine repressor protein (35kDa)
             (SRrp35), the gene for a novel protein similar to putative
             amidohydrolase, the 3' end of the GABRR1 gene for
             gamma-aminobutyric acid (GABA) receptor, rho 1 and 3 CpG
             islands, complete sequence
          Length = 127653

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 390   gcggcgccggcgcggcccaggg 411
             ||||||||||||||||||||||
Sbjct: 46462 gcggcgccggcgcggcccaggg 46483

>gb|AF147806.2| Gallid herpesvirus 2, complete genome
          Length = 174077

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    gagggccttgatcggcgaggg 286
              |||||||||||||||||||||
Sbjct: 132417 gagggccttgatcggcgaggg 132397



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  gagggccttgatcggcgaggg 286
            |||||||||||||||||||||
Sbjct: 6259 gagggccttgatcggcgaggg 6279

>gb|AC110883.12| Mus musculus chromosome 8, clone RP23-200N24, complete sequence
          Length = 293104

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     acattcttctctttatactgc 53
              |||||||||||||||||||||
Sbjct: 199342 acattcttctctttatactgc 199362

>gb|AC121836.2| Mus musculus BAC clone RP24-73L11 from 8, complete sequence
          Length = 195192

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     acattcttctctttatactgc 53
              |||||||||||||||||||||
Sbjct: 101429 acattcttctctttatactgc 101449

>dbj|D13389.1|HSMMD5 Gallid herpesvirus 1 genomic DNA, strain:Md5
          Length = 9275

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 266  gagggccttgatcggcgaggg 286
            |||||||||||||||||||||
Sbjct: 8654 gagggccttgatcggcgaggg 8634

>gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication intermediate, complete
              genome
          Length = 170950

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    gagggccttgatcggcgaggg 286
              |||||||||||||||||||||
Sbjct: 144475 gagggccttgatcggcgaggg 144455



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   gagggccttgatcggcgaggg 286
             |||||||||||||||||||||
Sbjct: 18355 gagggccttgatcggcgaggg 18375

>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence
          Length = 181750

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 194   gcatttctggggtgagggtcc 214
             |||||||||||||||||||||
Sbjct: 89922 gcatttctggggtgagggtcc 89902

>gb|AF243438.1|AF243438 Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome
          Length = 177874

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    gagggccttgatcggcgaggg 286
              |||||||||||||||||||||
Sbjct: 133900 gagggccttgatcggcgaggg 133880



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  gagggccttgatcggcgaggg 286
            |||||||||||||||||||||
Sbjct: 7720 gagggccttgatcggcgaggg 7740

>gb|U55024.1|MDU55024 Marek's disease gammaherpesvirus MKT-1 undidentified mRNA MDV1-I2,
           partial sequence
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 266 gagggccttgatcggcgaggg 286
           |||||||||||||||||||||
Sbjct: 809 gagggccttgatcggcgaggg 829

>ref|NM_192999.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 939

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 390 gcggcgccggcgcggcccagggtggtgc 417
           |||||||||||| |||||||| ||||||
Sbjct: 458 gcggcgccggcgaggcccaggttggtgc 431

>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   ggaagcagcggcgccggcgc 402
             ||||||||||||||||||||
Sbjct: 97006 ggaagcagcggcgccggcgc 97025

>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0055G24 map S20116S, complete sequence
          Length = 174210

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   ggaagcagcggcgccggcgc 402
             ||||||||||||||||||||
Sbjct: 20188 ggaagcagcggcgccggcgc 20207

>ref|XM_854413.1| PREDICTED: Canis familiaris neuropilin 2, transcript variant 4
            (NRP2), mRNA
          Length = 2781

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  ccagggtggtgcagctgcgg 425
            ||||||||||||||||||||
Sbjct: 2701 ccagggtggtgcagctgcgg 2682

>ref|XM_844576.1| PREDICTED: Canis familiaris neuropilin 2, transcript variant 2
            (NRP2), mRNA
          Length = 2730

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  ccagggtggtgcagctgcgg 425
            ||||||||||||||||||||
Sbjct: 2650 ccagggtggtgcagctgcgg 2631

>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel
             pseudogene, complete sequence
          Length = 204235

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    ctcaatttctctctactcgatcac 34
             |||||||||||||||||| |||||
Sbjct: 36264 ctcaatttctctctactctatcac 36241

>gb|AY197359.1| Canis familiaris neuropilin 2 (NRP2) gene, partial sequence
          Length = 175

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 406 ccagggtggtgcagctgcgg 425
           ||||||||||||||||||||
Sbjct: 112 ccagggtggtgcagctgcgg 131

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 391    cggcgccggcgcggcccagg 410
              ||||||||||||||||||||
Sbjct: 542520 cggcgccggcgcggcccagg 542501



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gccggcgcggcccagggtgg 414
              ||||||||||||||||||||
Sbjct: 353471 gccggcgcggcccagggtgg 353490

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 383     ggaagcagcggcgccggcgc 402
               ||||||||||||||||||||
Sbjct: 3503051 ggaagcagcggcgccggcgc 3503070

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 386      agcagcggcgccggcgcggc 405
                ||||||||||||||||||||
Sbjct: 25128279 agcagcggcgccggcgcggc 25128260



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 390      gcggcgccggcgcggcccagggtggtgc 417
                |||||||||||| |||||||| ||||||
Sbjct: 22486474 gcggcgccggcgaggcccaggttggtgc 22486447

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 387     gcagcggcgccggcgcggcc 406
               ||||||||||||||||||||
Sbjct: 4344400 gcagcggcgccggcgcggcc 4344419



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 391     cggcgccggcgcggcccagg 410
               ||||||||||||||||||||
Sbjct: 1839557 cggcgccggcgcggcccagg 1839538

>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 327     ggcatggtggcggagatgtt 346
               ||||||||||||||||||||
Sbjct: 3415313 ggcatggtggcggagatgtt 3415332

>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0688A04
          Length = 143969

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    agcagcggcgccggcgcggc 405
              ||||||||||||||||||||
Sbjct: 127887 agcagcggcgccggcgcggc 127868

>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1097D05
          Length = 144879

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 390  gcggcgccggcgcggcccagggtggtgc 417
            |||||||||||| |||||||| ||||||
Sbjct: 2211 gcggcgccggcgaggcccaggttggtgc 2184

>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0672C09
          Length = 145655

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 390    gcggcgccggcgcggcccagggtggtgc 417
              |||||||||||| |||||||| ||||||
Sbjct: 110612 gcggcgccggcgaggcccaggttggtgc 110585

>emb|AJ430229.1|TFU430229 Tapesia fusca 18S rRNA gene (partial), 5.8S rRNA gene, ITS 1 and 2,
           isolate ARON3154.H
          Length = 494

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 ctggggtgagggtccggtgg 219
           ||||||||||||||||||||
Sbjct: 33  ctggggtgagggtccggtgg 52

>dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H01, full
           insert sequence
          Length = 1183

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 390 gcggcgccggcgcggcccagggtggtgc 417
           |||||||||||| |||||||| ||||||
Sbjct: 580 gcggcgccggcgaggcccaggttggtgc 553

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 383     ggaagcagcggcgccggcgc 402
               ||||||||||||||||||||
Sbjct: 3511755 ggaagcagcggcgccggcgc 3511774

>dbj|D10474.1|SYCFRXC Synechocystis sp. frxC gene
          Length = 6475

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ggcatggtggcggagatgtt 346
           ||||||||||||||||||||
Sbjct: 863 ggcatggtggcggagatgtt 882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,368,752
Number of Sequences: 3902068
Number of extensions: 3368752
Number of successful extensions: 70361
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69835
Number of HSP's gapped (non-prelim): 526
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)