Clone Information

BLAST Search Result

Clone Name	bast58b11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	34	0.099
2	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	34	0.099
3	REPS2_HUMAN (Q8NFH8) RalBP1-associated Eps domain-containing pro...	33	0.13
4	REPS2_MOUSE (Q80XA6) RalBP1-associated Eps domain-containing pro...	33	0.22
5	GBRE_HUMAN (P78334) Gamma-aminobutyric-acid receptor epsilon sub...	31	0.64
6	NIPA_XENLA (Q6P7H4) NIPA-like protein (Zinc finger C3HC-type pro...	31	0.64
7	NUSA_MYCGE (P47387) Transcription elongation protein nusA	30	1.1
8	CI150_HUMAN (Q8IV03) Protein C9orf150	30	1.4
9	CI150_RAT (Q5BJW5) Protein C9orf150 homolog	30	1.4
10	SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S...	30	1.9
11	SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2	30	1.9
12	CI150_MOUSE (Q8K2P1) Protein C9orf150 homolog	30	1.9
13	GDF7_CERAE (Q9BDW8) Growth/differentiation factor 7 precursor (G...	29	2.4
14	DRS1_ASHGO (Q75F95) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)	29	2.4
15	KCNN2_MOUSE (P58390) Small conductance calcium-activated potassi...	29	3.2
16	SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1	29	3.2
17	SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik...	29	3.2
18	NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer...	29	3.2
19	SSH1_MOUSE (Q76I79) Protein phosphatase Slingshot homolog 1 (EC ...	29	3.2
20	FL3H_VITVI (P41090) Naringenin,2-oxoglutarate 3-dioxygenase (EC ...	29	3.2
21	TMCC2_MOUSE (Q80W04) Transmembrane and coiled-coil domains prote...	29	3.2
22	SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1	29	3.2
23	SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1	29	3.2
24	SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1	29	3.2
25	SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pr...	29	3.2
26	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	29	3.2
27	KCNN2_RAT (P70604) Small conductance calcium-activated potassium...	28	4.2
28	DCR1C_RAT (Q5XIX3) Artemis protein (EC 3.1.-.-) (DNA cross-link ...	28	4.2
29	ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	28	4.2
30	CS029_MOUSE (Q9CS00) Protein C19orf29 homolog	28	5.5
31	TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 3...	28	5.5
32	ILV1_TOBAC (P09342) Acetolactate synthase 1, chloroplast precurs...	28	5.5
33	DRS1_CANAL (Q5ACK7) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)	28	5.5
34	CREA_ASPAC (O94166) DNA-binding protein creA (Carbon catabolite ...	28	7.1
35	RSD1_SCHPO (O13845) RNA-binding protein rsd1	28	7.1
36	PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain...	28	7.1
37	H1_WHEAT (P27806) Histone H1	27	9.3
38	TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Ta...	27	9.3
39	RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4	27	9.3
40	MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-...	27	9.3
41	DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently...	27	9.3
42	SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S...	27	9.3
43	WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7...	27	9.3
44	B4GT7_HUMAN (Q9UBV7) Beta-1,4-galactosyltransferase 7 (EC 2.4.1....	27	9.3

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 33.9 bits (76), Expect = 0.099
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +1

Query: 97  TNRESVAYRSFRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQPAGDAGRHG 270
           + ++S + R + SS    R  R   PPPR  T+ R  SH+ SR+  P++  GD   +G
Sbjct: 212 STKDSYSSRDYPSS----RDTRDYAPPPRDYTY-RDYSHSSSRDDYPSRGYGDRDGYG 264

to top

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 33.9 bits (76), Expect = 0.099
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +1

Query: 97  TNRESVAYRSFRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQPAGDAGRHG 270
           + ++S + R + SS    R  R  TPPPR  T+ R   H+ SR+  P++  GD   +G
Sbjct: 212 STKDSYSSRDYPSS----RDTRDYTPPPRDYTY-RDYCHSSSRDDYPSRGYGDRDGYG 264

to top

>REPS2_HUMAN (Q8NFH8) RalBP1-associated Eps domain-containing protein 2|
           (RalBP1-interacting protein 2) (Partner of RalBP1)
          Length = 660

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 85  SSTNTNRESVAYRSFRSSEFEARGVRKVTPPPR-SLTHTRAQSHTRSRERQPAQPAGDAG 261
           +S      S +Y S    E   RG    TPPPR   TH+RA S   ++  QP+ PA  +G
Sbjct: 451 NSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFQPSVPATKSG 510

to top

>REPS2_MOUSE (Q80XA6) RalBP1-associated Eps domain-containing protein 2|
           (RalBP1-interacting protein 2) (Partner of RalBP1)
          Length = 521

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 85  SSTNTNRESVAYRSFRSSEFEARGVRKVTPPPR-SLTHTRAQSHTRSRERQPAQPAGDAG 261
           +S      S +Y S    E   RG    TPPPR   TH+RA S   ++   P+ PA ++G
Sbjct: 312 NSLKARPRSRSYSSTSIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFLPSAPAANSG 371

to top

>GBRE_HUMAN (P78334) Gamma-aminobutyric-acid receptor epsilon subunit precursor|
           (GABA(A) receptor)
          Length = 506

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 146 KLEVSEKLPHPLARSLTHAHSRTRARERD-SQPSRRATQAGMATSSG--GQSSPRAASDL 316
           K   S KL HP  R  + AH+RTRAR R  ++  + A    + T+ G  G+  P  ++  
Sbjct: 370 KAHASPKLRHP--RINSRAHARTRARSRACARQHQEAFVCQIVTTEGSDGEERPSCSAQQ 427

Query: 317 AVIPSYPE 340
              P  PE
Sbjct: 428 PPSPGSPE 435

to top

>NIPA_XENLA (Q6P7H4) NIPA-like protein (Zinc finger C3HC-type protein 1-like)|
          Length = 477

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 176 PLARSLTHAHSRTRARERDSQPSRRATQAGMATSSGGQSSPRAASD 313
           P+ RS+    +     E  S P RRA +  + +SS   +SPR+  D
Sbjct: 350 PVTRSMGQGENTGLGNELHSSPHRRAKRPRLCSSSSSDTSPRSCFD 395

to top

>NUSA_MYCGE (P47387) Transcription elongation protein nusA|
          Length = 531

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +1

Query: 67  ARLILISSTNTNRESVAYRSFRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQP 246
           A+ +++ +     E VA +    S+ E    ++VTP  +     +A+ H+ S  ++PA+P
Sbjct: 437 AKDLMVDNKQKQPEQVAKQVVEKSQLE----KQVTPKEKEKVQPKAKVHSNSHSKKPAKP 492

to top

>CI150_HUMAN (Q8IV03) Protein C9orf150|
          Length = 231

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 131 DLRSLKLEVSEKLPHPLARSLTHAHSRTRARERD 232
           DLR ++L++  K+P  L RSL       R R+RD
Sbjct: 8   DLRDIELKLGRKVPESLVRSLRGEEPVPRERDRD 41

to top

>CI150_RAT (Q5BJW5) Protein C9orf150 homolog|
          Length = 221

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = +2

Query: 131 DLRSLKLEVSEKLPHPLARSLTHAHSRTRARERD-------SQPSRRATQAGMATSSGGQ 289
           DLR ++L++  K+P  LARSL       R    D          S   +    + SS   
Sbjct: 8   DLRDIELKLGRKVPESLARSLRGEEPAPREGAADPSGVGGSCSSSSSCSSFAPSVSSSSS 67

Query: 290 SSPRAASDLAVIPSYPEMI 346
           SSP + S     PS  E +
Sbjct: 68  SSPASGSPRRSHPSALERL 86

to top

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +1

Query: 85  SSTNTNRESVAYRSFRSSEFEARGV----RKVTPPPRSLTHTRAQSHTRSRERQPAQPAG 252
           SS++ +R S +  S RSS    RG     R      RS + +R++S   SR R   +   
Sbjct: 363 SSSSASRTSSSRSSSRSSSRSRRGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHS 422

Query: 253 DAG-RHGHLQRR 285
           D G R GH   R
Sbjct: 423 DGGSRDGHRYSR 434

to top

>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2|
          Length = 2061

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = +2

Query: 92  RIRTVKAWP------IDPLDLRSLKLEVSEKLPHPLARSLTHAHSRTRARERDSQPSRRA 253
           R+RT  + P      I+P  L  L+++     PHP      H H R+ ++    Q    A
Sbjct: 531 RLRTQLSQPPTTLDDIEPAPLDDLEMQPLPSPPHP----HPHHHYRSNSQPNTLQRGDSA 586

Query: 254 TQAGMATSSGG 286
           + AGM    GG
Sbjct: 587 SSAGMGAGVGG 597

to top

>CI150_MOUSE (Q8K2P1) Protein C9orf150 homolog|
          Length = 221

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = +2

Query: 131 DLRSLKLEVSEKLPHPLARSLTHAHSRTRARERD-------SQPSRRATQAGMATSSGGQ 289
           DLR ++L++  K+P  LARSL       R    D          S   +    + SS   
Sbjct: 8   DLRDIELKLGRKVPESLARSLRGEELAPREGAADPSGVGGSCSSSSSCSSFAPSVSSSSS 67

Query: 290 SSPRAASDLAVIPSYPEMI 346
           SSP + S     PS  E +
Sbjct: 68  SSPASGSPRRSHPSALERL 86

to top

>GDF7_CERAE (Q9BDW8) Growth/differentiation factor 7 precursor (GDF-7)|
          Length = 447

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
 Frame = +1

Query: 70  RLILISSTNTNRESVAYRSFRSSEFEARGVRKVTPPP---------RSLTHTRAQSHTRS 222
           R +L+ S+ T R+   +R  R+            PPP         R++T  R +  T  
Sbjct: 262 RALLVVSSRTQRKESLFREMRAQARALGAALAAQPPPDPGTGTGSPRAVTAGRRRRRTAL 321

Query: 223 RERQPAQPAGDAGRHGHLQR 282
              + AQ +G     GH +R
Sbjct: 322 AGTRTAQGSGGGAGRGHGRR 341

to top

>DRS1_ASHGO (Q75F95) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 734

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/77 (29%), Positives = 39/77 (50%)
 Frame = +1

Query: 19  DELNENRNLVWNKRVKARLILISSTNTNRESVAYRSFRSSEFEARGVRKVTPPPRSLTHT 198
           DELNE  +L+ +KR   + +L S+T  +R     +   S   + + VR +  PP+   + 
Sbjct: 385 DELNEIMSLIPSKR---QTLLFSATMNSR----IKQLISLSLK-KPVRIMIDPPKQAANK 436

Query: 199 RAQSHTRSRERQPAQPA 249
             Q   R R+R+  +PA
Sbjct: 437 LTQEFVRLRKREHLKPA 453

to top

>KCNN2_MOUSE (P58390) Small conductance calcium-activated potassium channel|
           protein 2 (SK2)
          Length = 574

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 206 SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIV 349
           SR   +E DS+       A +    GG SSP AA+  A   S PE++V
Sbjct: 20  SRRNLQEMDSEAQPLQPPASVVGGGGGASSPSAAA--AASSSAPEIVV 65

to top

>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1|
          Length = 245

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 FRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRER 231
           FRS E E   +R     PRS ++ R++S +RSR R
Sbjct: 179 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSR 213

to top

>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1|
          Length = 245

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 FRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRER 231
           FRS E E   +R     PRS ++ R++S +RSR R
Sbjct: 190 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSR 224

to top

>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells|
           cyclophilin-related protein) (NK-TR protein)
          Length = 1462

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = +1

Query: 49  WNKRVKARLILISSTNTNRESVAYRSFRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRE 228
           W+K  K   +  S T+++R+S  YRS   S+  +RG  +     +S +H+R++S +RS  
Sbjct: 500 WSKSDKD--VQSSLTHSSRDS--YRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSS 555

Query: 229 R 231
           +
Sbjct: 556 K 556



 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 85   SSTNTNRESVAYRSFRSSEFEARGVRKVT---PPPRSLTHTRAQSHTRSRERQPAQPAGD 255
            S   T   S +YRS++S    +R   + +   P  RS ++T    ++RSR R  +Q +  
Sbjct: 1363 SRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSRSYTYDSYYSRSRSRSRSQRSDS 1422

Query: 256  AGRHGHLQRR 285
              R     RR
Sbjct: 1423 YHRGRSYNRR 1432

to top

>SSH1_MOUSE (Q76I79) Protein phosphatase Slingshot homolog 1 (EC 3.1.3.48) (EC|
           3.1.3.16) (SSH-1L) (mSSH-1L)
          Length = 1042

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 167 LPHPLARSLTHAHSRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMI 346
           LPH  +  + HA SR+RA ER +  S  A  +     +G +    + S     P  P  +
Sbjct: 686 LPHVTSSPMAHASSRSRAPERPA--SGPANTSPFLLPAGSRKPDVSGSGAGAAPEPPASL 743

Query: 347 VE 352
           +E
Sbjct: 744 LE 745

to top

>FL3H_VITVI (P41090) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9)|
           (Flavonone-3-hydroxylase) (F3H) (FHT)
          Length = 364

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 77  F*FPVRIRTVKAWPIDPLDLRSLKLEVSEKL 169
           F +P+R R    WP  P   RS+  E SEKL
Sbjct: 135 FSYPLRTRDYSRWPDKPEGWRSVTQEYSEKL 165

to top

>TMCC2_MOUSE (Q80W04) Transmembrane and coiled-coil domains protein 2|
          Length = 706

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 203 HSRTRARERDSQPSRRATQAGMATSSGGQSSP 298
           HSR R+RER+ Q S+ A Q         Q SP
Sbjct: 89  HSRRRSREREHQASQEAQQQQQQQGLSDQDSP 120

to top

>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1|
          Length = 267

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 FRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRER 231
           FRS E E   +R     PRS ++ R++S +RSR R
Sbjct: 199 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSR 233

to top

>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 FRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRER 231
           FRS E E   +R     PRS ++ R++S +RSR R
Sbjct: 179 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSR 213

to top

>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 FRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRER 231
           FRS E E   +R     PRS ++ R++S +RSR R
Sbjct: 179 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSR 213

to top

>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing|
           factor SF2, P33 subunit) (Alternative splicing factor
           ASF-1)
          Length = 247

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 FRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRER 231
           FRS E E   +R     PRS ++ R++S +RSR R
Sbjct: 179 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSR 213

to top

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +2

Query: 134  LRSLKLEVSEKLPHPLARSLTHAHSRTRARERDSQPSRRATQAGMATSSGGQSSPRAASD 313
            +   K E  +K      R       R R RER+ +  R A +A  +   G  S P+ +  
Sbjct: 1159 IEKAKREAEQKAREEREREKEKEKEREREREREREAERAAQKASSSAHEGRLSDPQLSGP 1218

Query: 314  LAVIPSY 334
              + PS+
Sbjct: 1219 GHMRPSF 1225

to top

>KCNN2_RAT (P70604) Small conductance calcium-activated potassium channel|
           protein 2 (SK2)
          Length = 580

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 206 SRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIV 349
           SR    E DS+       A +    GG SSP AA+  A   S PE++V
Sbjct: 20  SRRNLHEMDSEAQPLQPPASVVGGGGGASSPSAAA--AASSSAPEIVV 65

to top

>DCR1C_RAT (Q5XIX3) Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C|
           protein) (SNM1-like protein)
          Length = 698

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 160 RKVTPPPRSLTHTRAQSHTRSRERQPAQPAGDAGRHGHLQ 279
           RK +P   SLT T+A S + S    P+ P  +  +  HLQ
Sbjct: 634 RKSSPEKTSLTSTQADSQSSSDFEIPSTPEAELPKPEHLQ 673

to top

>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 175 PPRSLTHTRAQSHTRSRERQPAQPAGDAGRHG 270
           PPR+ THTR  S   SR   P++P      HG
Sbjct: 544 PPRAATHTRPPSRPPSR---PSRPPSHPSAHG 572

to top

>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog|
          Length = 772

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 130 RSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQPAGDAGRHGHLQRR 285
           R S   +R V +     RS +  R++S +RSR R  ++    +  HG   RR
Sbjct: 10  RDSRSRSRSVGRRGRKQRSRSRGRSRSRSRSRSRSRSRSRSRSRSHGRSSRR 61

to top

>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11)
          Length = 324

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
 Frame = +1

Query: 103 RESVAYRSFRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQPAGD--------A 258
           R+S+++    S        R+ +PPP SL      S + S    P  P GD        +
Sbjct: 180 RQSISFSGLPSG-------RRTSPPPASLAGPSVSSWSFSPSSSPPPPPGDLLLSPSAFS 232

Query: 259 GRHGHLQRR 285
              GHL RR
Sbjct: 233 AAPGHLCRR 241

to top

>ILV1_TOBAC (P09342) Acetolactate synthase 1, chloroplast precursor (EC|
           2.2.1.6) (Acetolactate synthase I) (Acetohydroxy-acid
           synthase I) (ALS I)
          Length = 667

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 163 KVTPPPRSLTHTRAQSHTRSR 225
           K TPPP  LTHT    H++ R
Sbjct: 41  KTTPPPLHLTHTHIHIHSQRR 61

to top

>DRS1_CANAL (Q5ACK7) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 613

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +1

Query: 19  DELNENRNLVWNKRVKARLILISSTNTNRESVAYRSFRSSEFEARGVRKVTPPPRSLTHT 198
           DEL E  +L+  K  +  L+  ++ NT  + +   S +      + VR +  PP+S+   
Sbjct: 294 DELTEILSLI-PKHKRQTLLFSATMNTRIQDLIQLSLQ------KPVRIMIDPPKSVASK 346

Query: 199 RAQSHTRSRERQPAQPA 249
             Q   R R+R   +PA
Sbjct: 347 LLQQFVRIRKRDQLKPA 363

to top

>CREA_ASPAC (O94166) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 431

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 158 SEKLPHPLARSLTHAHSRTRARERDSQPSRRATQA-GMATSSGGQSSPRAASDL 316
           S +LP   A ++TH  SR+ + E D   S R  ++   + +S   SSP  + DL
Sbjct: 257 SGRLPSLSAYAITHNMSRSHSHEEDDSYSHRVKRSRPNSPNSTAPSSPTFSHDL 310

to top

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 121 RSFR--SSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQPAGDAGRHGHLQRRP 288
           RSF+  S  +E+ G  ++TPPP S+ +  A+S  +S +R+ +    D   +    R P
Sbjct: 58  RSFKPVSKNYESEG--RLTPPPVSMGYRYARSSKQSFQREDSGYNDDVVTNSSSHRTP 113

to top

>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Activated in prostate cancer protein)
          Length = 2839

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 215  RARERDSQP-SRRATQAGMATSSGGQSSPRAASDLAVIPSYP 337
            RA   DS P S  A++ GM+ +   QS PR AS +A   + P
Sbjct: 2027 RAPRADSGPVSPAASRNGMSVAGNRQSEPRLASHVAADTAQP 2068

to top

>H1_WHEAT (P27806) Histone H1|
          Length = 238

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 233 SQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPEMIVEAIASL 367
           ++P++    A    S+ G   PR        PSY EM+ EAIA+L
Sbjct: 28  AKPAKAPKAAKAKKSTPGPKKPRVTP---AHPSYAEMVSEAIAAL 69

to top

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = +2

Query: 146  KLEVSEKLPHPLARSLTHAHSRTR--------ARERDSQPSRRATQAGMATSSGGQSSPR 301
            KL + E    PL   L  AH+  R        A E++ Q  R   +A        Q++PR
Sbjct: 1685 KLPLRENKRVPLTALLNQAHNDRRGPTSDSHEALEKEVQSLRAQLEAWRLRGEAPQNAPR 1744

Query: 302  AASDLAVIPSY 334
               D  + P Y
Sbjct: 1745 LQEDSHIPPGY 1755

to top

>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4|
          Length = 211

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 100 NRESVAYRSFRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQPAGDAG 261
           N     Y S   S+         T P +  T  R++ H RSRE    +  GDAG
Sbjct: 39  NPNDPEYNSDSQSQAPPHPPSSRTKPEQVDTVRRSREHMRSREESELKQFGDAG 92

to top

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 QPSRRATQAGMATSSGGQSSPRAASDLAVIPS 331
           QPS   T +G  +S  G  +P AAS   V+PS
Sbjct: 458 QPSLPGTTSGSLSSVPGAPAPPAASKAPVVPS 489

to top

>DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently-linked cell|
           wall protein 13)
          Length = 298

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +2

Query: 155 VSEKLPHPLARSLTHAHSRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSY 334
           +SE L +    +   A +   +    S+ S  AT++  ++ S  ++S  AAS  A + S 
Sbjct: 108 ISEALANGGIATAVPASTTEASSTSTSEASSAATESSSSSESSAETSSNAASTQATVSSE 167

Query: 335 PEMIVEAIAS 364
                  IAS
Sbjct: 168 SSSAASTIAS 177

to top

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 85  SSTNTNRESVAYRSFRSSEFEARGVRKVTPPPRSLTHTRAQSHTRSRERQPAQPAGDAGR 264
           SS++ +R S +  S RSS    RG         + + +R+ S +RSR R+ ++      R
Sbjct: 367 SSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRR 426

Query: 265 H 267
           H
Sbjct: 427 H 427

to top

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 164  KLPHPLARSLTHAHSRTRARERDSQPSRRATQAGMATSSGGQSSPRAASDLAVIPSYPE 340
            +LP PL      A +R    E+ +  S  A  +  +     +   + ASD  V+PS P+
Sbjct: 1654 QLPQPLVEKSELAPTRGAVMEQGTSSSMTAESSPRSMLGYDRDGRQVASDSHVVPSVPQ 1712

to top

>B4GT7_HUMAN (Q9UBV7) Beta-1,4-galactosyltransferase 7 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 7) (Beta4Gal-T7) (b4Gal-T7)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 7) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 7) [Includes: X
          Length = 327

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 240 GWLSLSRARVRLCACVSERARGWGNFSDTSSFKLRRSKGS 121
           G L LS+   RLC  +S R  GWG   D      RR KG+
Sbjct: 202 GILLLSKQHYRLCNGMSNRFWGWGREDDEF---YRRIKGA 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,725,299
Number of Sequences: 219361
Number of extensions: 788594
Number of successful extensions: 3216
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3199
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result