ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing pro... 28 8.2
2COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component... 28 8.2

>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1177

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 193 SHCPCLLFSETTTKGTGLAESAGKEDPVELDSSP 294
           SHCP  ++S  ++ G G     G E PV    SP
Sbjct: 464 SHCPQRMYSSESSPGPGSKVPQGCESPVRHPGSP 497



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>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 201 SLSTIQRNHNQGNGLGGISGERRPC 275
           +L T+ R H  G G+G + GE + C
Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,999,691
Number of Sequences: 219361
Number of extensions: 1259687
Number of successful extensions: 2926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2925
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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