>SMN_RAT (O35876) Survival motor neuron protein|
          Length = 289

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 207 RGTGRSRPGKERSSPRRRVNGELKEWSGAEGAAVVW 100
           +GT R +P K+  + ++     LK+W   +  + VW
Sbjct: 65  KGTARRKPAKKNKNQKKNATAPLKQWKAGDKCSAVW 100

>SMN_MOUSE (P97801) Survival motor neuron protein|
          Length = 288

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 207 RGTGRSRPGKERSSPRRRVNGELKEWSGAEGAAVVW 100
           +GT R +P K+  S ++     LK+W   +  + VW
Sbjct: 64  KGTARRKPAKKNKSQKKNATTPLKQWKVGDKCSAVW 99

>MILK2_HUMAN (Q8IY33) MICAL-like protein 2|
          Length = 904

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -3

Query: 361 ECRCPWVGAA--AASEREVEI*TGELPPAPASVPR*WLLTSLLPERSRKLRVDSGDGEEP 188
           +C C     A  A  E    + T  LP A ++ P+   LT L+P +   + VDS     P
Sbjct: 217 QCSCTLHSGAYKATGEPGTFVCTSHLPAAASASPK---LTGLVPRQPGAMGVDSRTSCSP 273

Query: 187 SGEREEQSSPPGQW 146
              +E   + P  W
Sbjct: 274 QKAQEANKARPSAW 287

>HA1B_BOVIN (P13753) BOLA class I histocompatibility antigen, alpha chain BL3-7|
           precursor
          Length = 364

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 153 VNGELKEWSGAEGAAVVWWRPWE--GAARRW 67
           +N EL+ W+ A+ AA +  R WE  GAA  W
Sbjct: 153 LNEELRSWTAADTAAQITKRKWEAAGAAETW 183

>GON1_MORSA (O73812) Progonadoliberin-1 precursor (Progonadoliberin I)|
           [Contains: Gonadoliberin-1 (Gonadoliberin I)
           (Luteinizing hormone-releasing hormone I) (LH-RH I)
           (Gonadotropin-releasing hormone I) (GnRH-I) (Luliberin
           I); GnRH-associated peptide 1 (G
          Length = 95

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 372 WAHGLDPGAPDRRDGRKEPLGSSI--GFP 452
           W++GL PG     DG  E LG+ I  GFP
Sbjct: 25  WSYGLSPGGKRELDGLSETLGNQIVGGFP 53

>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 432 PEAPSGHPGGRERLGPVREPKITENADALGWVLLP 328
           P  P G PG R  LGPV  P +     +LG   LP
Sbjct: 617 PRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLP 651

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 158  RRGLLLSFP----GRLLPVPRIHPQLSGPLRQQASQQPLARHGGRRWWQLAGSDLHLALA 325
            RRGL+LS P    G L   PR HP  +    +       +R GGRRW   AG        
Sbjct: 2365 RRGLVLSPPPPPPGEL--APRAHPARTP---RPGPGDSRSRRGGRRWTASAGK------G 2413

Query: 326  GGSSTHPRASA 358
            GG    PRASA
Sbjct: 2414 GGG---PRASA 2421

>RRMJ3_CHICK (Q5ZKM1) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 832

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 253 LTSLLPERSRKLRVDSGDGEEPSGEREEQSSPP 155
           LT  L E++++L ++   GEE  G  EE+ + P
Sbjct: 319 LTKKLKEQAKELDINLSSGEEEEGREEEEKTSP 351

>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
 Frame = +3

Query: 225 LDLSGSRLVSSH*RGTEAGAGGSSPVQISTSRSLAAAAPTQG----HLHSP*SWAHGLDP 392
           L  +GS   +       AG+G +SP         AAAAP  G       +P +     +P
Sbjct: 57  LQANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAP-AEGEAAEP 115

Query: 393 GAPDRRDGRKEPLGSSIGFP 452
           G+P   +G      SS   P
Sbjct: 116 GSPTAAEGEAASAASSTSSP 135

>CEND3_HUMAN (Q8WWN8) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin|
           repeat and pleckstrin homology domain-containing protein
           3)
          Length = 1544

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +3

Query: 264 RGTEAGAGGSSPVQISTSRSLAAAAPTQG--HLHSP*SWAHGLDP----GAPDRRDGR 419
           RG    A   +P     S    A  PT G  H+  P    +G+ P    GAPDRR+ R
Sbjct: 166 RGRAQAAQDKAPDSSQISAPTPALRPTTGTVHIMDPGCLYYGVQPVGTPGAPDRRESR 223

>IP5PC_ARATH (Q84W55) Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (EC|
           3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein)
          Length = 1101

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 132 WSGAEGAAVVWWRPWEGA 79
           WSG+EG A+  W PW+GA
Sbjct: 242 WSGSEGGALKVW-PWDGA 258

>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,|
            nonerythroid)
          Length = 3924

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 286  PAPASVPR*WLLTSLLPERSRKLRVDSGDGEEPSGEREEQSSPPGQ 149
            P PA+V +  LLT +   RSR LR   G  E+ S E+       G+
Sbjct: 2455 PLPAAVAKTELLTEVASVRSRLLRDPDGSAEDDSLEQTSLMESSGK 2500

>KCNN3_HUMAN (Q9UGI6) Small conductance calcium-activated potassium channel|
           protein 3 (SK3) (SKCa3)
          Length = 736

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -3

Query: 361 ECRCPWVGAAAASEREVEI*TGELPPAPASVPR*WLLTSLLPERSRKLRVDSGDGEEPSG 182
           +C CP  G     +++ +      PPAP + P+  L  SL P+   +L+      ++   
Sbjct: 20  KCPCPSSGDEQQQQQQQQQQQQPPPPAPPAAPQQPLGPSLQPQ-PPQLQQQQQQQQQQQQ 78

Query: 181 EREEQSSPP 155
           ++++Q  PP
Sbjct: 79  QQQQQQQPP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,670,412
Number of Sequences: 219361
Number of extensions: 902470
Number of successful extensions: 3899
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3897
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)