ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58b08 |
|---|---|
| Clone Library Name | barley_pub |
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 89.0 bits (219), Expect = 3e-18 Identities = 44/62 (70%), Positives = 51/62 (82%) Frame = +2 Query: 131 RLASVYSEVQTSRIAHMLPLPSVLCSHFTLADGPASTAAGSPDEIAKLFPCLYGQPSASV 310 R ASVYSEVQ+SRI H+LPLPSVL F + GP S+AAG+PDEIAKLFP L+GQPSA + Sbjct: 8 RAASVYSEVQSSRIEHVLPLPSVLNHPFKIVQGPPSSAAGNPDEIAKLFPNLFGQPSAML 67 Query: 311 VP 316 VP Sbjct: 68 VP 69
>PFPB_SOLTU (P21343) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 87.4 bits (215), Expect = 8e-18 Identities = 43/62 (69%), Positives = 49/62 (79%) Frame = +2 Query: 131 RLASVYSEVQTSRIAHMLPLPSVLCSHFTLADGPASTAAGSPDEIAKLFPCLYGQPSASV 310 R A+VYSEVQ SR+ H LPLPSVL S F + DGP S+AAG P+EIAKLFP LYGQP S+ Sbjct: 8 RYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLYGQPHVSL 67 Query: 311 VP 316 VP Sbjct: 68 VP 69
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 54 PHRQPHRIAWRPRRWPPTGARRPCP 128 PH Q + +P +PPTGARRP P Sbjct: 53 PHAQKPQWQDQPNVYPPTGARRPRP 77
>MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)| Length = 582 Score = 26.2 bits (56), Expect(2) = 1.6 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 179 MLPLPSVLCSHFTLADGPASTAAGSPDEIAKLFPCLYGQPSASV 310 ++P+P V S L P AA P +A P L G P S+ Sbjct: 88 VIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQPALVGAPGLSI 131 Score = 22.3 bits (46), Expect(2) = 1.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +3 Query: 30 LQISPPAPPHRQPHRIA 80 L +SPPAPP P +A Sbjct: 65 LPLSPPAPPPAPPPPLA 81
>GON2_HUMAN (O43555) Progonadoliberin-2 precursor (Progonadoliberin II)| [Contains: Gonadoliberin-2 (Gonadoliberin II) (Luteinizing hormone-releasing hormone II) (LH-RH II) (Gonadotropin-releasing hormone II) (GnRH II) (Luliberin II); GnRH-associated pepti Length = 120 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -3 Query: 279 GNSLAISSGLPAAVLAGPSARVKWEQRTEGRGSMCAMRLVCTSLYTDAR 133 G+ + + GLP+ LA + WE RT + S+ R + +L T AR Sbjct: 60 GSPVQTAHGLPSDALAPLDDSMPWEGRTTAQWSLHRKRHLARTLLTAAR 108
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 18 HSIFLQISPPAPPHRQPHRIAWRPRRWPPTGARRP 122 HS ++S P+PP R P + P P G +P Sbjct: 346 HSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKP 380
>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 753 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +3 Query: 36 ISPPAPPHRQPHRIAWRPRRWPPTGARRPCPG 131 + PP+ PH P + P PTGA PG Sbjct: 455 LGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPG 486
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 12 SAHSIFLQISPPAPPHRQPHRIAWRPRRWPPTGARRPCP 128 S+ +I + PP P P R A R PP+GAR P P Sbjct: 1096 SSQTIEPKRPPPPRPVAPPARPAPPQRPPPPSGARSPAP 1134
>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing| protein 1 (GTF2I repeat domain-containing protein 1) (Muscle TFII-I repeat domain-containing protein 1) (General transcription factor III) (Slow-muscle-fiber enhancer binding Length = 959 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = +2 Query: 176 HMLPLP--SVLCSHFTLADGPASTAAGSPDEIAKLFPCLYGQP 298 HM+P+P + C D A G PD+I PC YG P Sbjct: 371 HMVPVPYRKIAC------DPEAVEIVGIPDKIPFKRPCTYGVP 407
>CASK_PIG (P11841) Kappa-casein precursor| Length = 188 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 48 APPHRQPHRIAWRPRRWPPTGARRPCP 128 A PH Q + +P +PPT ARRP P Sbjct: 87 AGPHAQKPQWQDQPNVYPPTVARRPRP 113
>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1575 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 42 PPAPPHRQPHRIAWRPRRWPPTGARRPCP 128 PP P P R A R PP+GAR P P Sbjct: 1109 PPPRPVAPPTRPAPPQRPPPPSGARSPAP 1137
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 42 PPAPPHRQPHRIAWRPRRWPPTGARRPCP 128 PP P P R A R PP+GAR P P Sbjct: 1106 PPPRPVAPPARPAPPQRPPPPSGARSPAP 1134
>SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) (p150) (Fragment) Length = 1324 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 42 PPAPPHRQPHRIAWRPRRWPPTGARRPCP 128 PP P P R A R PP+GAR P P Sbjct: 1109 PPPRPVAPPARPAPPQRPPPPSGARSPAP 1137
>PTC1_MOUSE (Q61115) Protein patched homolog 1 (PTC1) (PTC)| Length = 1434 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 9/38 (23%) Frame = +3 Query: 42 PPAPPHRQPH---------RIAWRPRRWPPTGARRPCP 128 PP P +QPH R +PRR PP RP P Sbjct: 1264 PPLTPRQQPHLDSGSLSPGRQGQQPRRDPPREGLRPPP 1301
>GT2D1_MOUSE (Q9JI57) General transcription factor II-I repeat domain-containing| protein 1 (GTF2I repeat domain-containing protein 1) (Binding factor for early enhancer) Length = 1104 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Frame = +2 Query: 176 HMLPLP--SVLCSHFTLADGPASTAAGSPDEIAKLFPCLYGQP 298 HM+P+P + C D A G PD+I PC YG P Sbjct: 371 HMVPVPYRKIAC------DPEAVEIVGIPDKIPFKRPCTYGVP 407 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,248,371 Number of Sequences: 219361 Number of extensions: 497405 Number of successful extensions: 2143 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2026 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2140 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
