ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast58b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103904.1| Oryza sativa (japonica cultivar-group) cDNA clon... 359 6e-96
2dbj|AK058974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 359 6e-96
3ref|XM_479312.1| Oryza sativa (japonica cultivar-group), mRNA 343 3e-91
4dbj|AK060158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 3e-91
5gb|AY107290.1| Zea mays PCO063868 mRNA sequence 337 2e-89
6gb|BT017479.1| Zea mays clone EL01N0408G09.c mRNA sequence 309 5e-81
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 202 8e-49
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 202 8e-49
9emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 202 8e-49
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
11dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
12dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
13ref|NM_187710.1| Oryza sativa (japonica cultivar-group), predic... 48 0.027
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
15dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
16dbj|AK122051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
17dbj|AK104205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
18dbj|AK071713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
19dbj|AK060908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
20dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
21ref|NM_103620.2| Arabidopsis thaliana APFI AT1G47260 (APFI) mRNA... 46 0.11
22gb|AY113936.1| Arabidopsis thaliana unknown protein (At1g47260) ... 46 0.11
23gb|AY045979.1| Arabidopsis thaliana unknown protein (At1g47260) ... 46 0.11
24emb|BX816589.1|CNS0ADBJ Arabidopsis thaliana Full-length cDNA Co... 46 0.11
25gb|AC079677.4|AC079677 Arabidopsis thaliana chromosome 1 BAC F8G... 46 0.11
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
27dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
28ref|XM_421034.1| PREDICTED: Gallus gallus similar to mucin 5 (LO... 40 6.6
29gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.6
30gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 40 6.6
31gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 6.6

>dbj|AK103904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150M03, full
           insert sequence
          Length = 1238

 Score =  359 bits (181), Expect = 6e-96
 Identities = 265/293 (90%)
 Strand = Plus / Plus

                                                                       
Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 173 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 232

                                                                       
Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct: 233 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcagctttca 292

                                                                       
Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354
           |||||||| ||  |||||| ||||||||| || |||||  |  || |||| |||||||||
Sbjct: 293 aggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgttttt 352

                                                                       
Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414
           ||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 353 gttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatctgg 412

                                                                
Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattggatctggatc 467
           || |||||| |||| ||||||||||||||||| |||| |||||||||||||||
Sbjct: 413 tacggctccattttaagaggtgatgtcaacagcattcatattggatctggatc 465



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>dbj|AK058974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D04, full
           insert sequence
          Length = 1195

 Score =  359 bits (181), Expect = 6e-96
 Identities = 265/293 (90%)
 Strand = Plus / Plus

                                                                       
Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 175 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 234

                                                                       
Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcagctttca 294

                                                                       
Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354
           |||||||| ||  |||||| ||||||||| || |||||  |  || |||| |||||||||
Sbjct: 295 aggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgttttt 354

                                                                       
Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414
           ||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 355 gttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatctgg 414

                                                                
Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattggatctggatc 467
           || |||||| |||| ||||||||||||||||| |||| |||||||||||||||
Sbjct: 415 tacggctccattttaagaggtgatgtcaacagcattcatattggatctggatc 467



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>ref|XM_479312.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1155

 Score =  343 bits (173), Expect = 3e-91
 Identities = 257/285 (90%)
 Strand = Plus / Plus

                                                                       
Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
           ||||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 83  atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 142

                                                                       
Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294
           ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||
Sbjct: 143 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcagctgcca 202

                                                                       
Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354
           |||||||| ||| |||||| ||||||||| || |||||  | ||| |||| |||||||||
Sbjct: 203 aggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttttt 262

                                                                       
Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414
           ||||| ||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct: 263 gttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatctgg 322

                                                        
Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattgga 459
           ||||||||| |||| ||||||||||||||||| |||| |||||||
Sbjct: 323 tatggctccattttaagaggtgatgtcaacagcattcatattgga 367



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>dbj|AK060158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G03, full
           insert sequence
          Length = 1155

 Score =  343 bits (173), Expect = 3e-91
 Identities = 257/285 (90%)
 Strand = Plus / Plus

                                                                       
Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
           ||||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 83  atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 142

                                                                       
Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294
           ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||
Sbjct: 143 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcagctgcca 202

                                                                       
Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354
           |||||||| ||| |||||| ||||||||| || |||||  | ||| |||| |||||||||
Sbjct: 203 aggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttttt 262

                                                                       
Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414
           ||||| ||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct: 263 gttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatctgg 322

                                                        
Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattgga 459
           ||||||||| |||| ||||||||||||||||| |||| |||||||
Sbjct: 323 tatggctccattttaagaggtgatgtcaacagcattcatattgga 367



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>gb|AY107290.1| Zea mays PCO063868 mRNA sequence
          Length = 1381

 Score =  337 bits (170), Expect = 2e-89
 Identities = 260/290 (89%)
 Strand = Plus / Plus

                                                                       
Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
           ||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 172 atgggtaccctggggcgcgcgatcttcacggtgggcaagtggatccggggcacggggcag 231

                                                                       
Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294
           ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 232 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggaacaggtttca 291

                                                                       
Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354
           |||||||||||| ||||||  || ||||| || |||||| ||||| | | |||||| |||
Sbjct: 292 aggcatcgtacaatcatgaatatttttgagaaagagccaaggatccatagagatgtgttt 351

                                                                       
Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414
           ||||| ||||||||| | |||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 352 gttgctcccagtgcagcagtcattggggatgttgagattggtcatggatcgtcaatctgg 411

                                                             
Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattggatctgg 464
           || || ||| | |||||||||||||||||||| |||| ||||||||||||
Sbjct: 412 tacggatccatattgagaggtgatgtcaacagcattcatattggatctgg 461



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>gb|BT017479.1| Zea mays clone EL01N0408G09.c mRNA sequence
          Length = 1166

 Score =  309 bits (156), Expect = 5e-81
 Identities = 237/264 (89%)
 Strand = Plus / Plus

                                                                       
Query: 201 cacggtgggcaagtggatccgtggcacggggcaggccatggaccgcctcggatccaccat 260
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10  cacggtgggcaagtggatccggggcacggggcaggccatggaccgcctcggatccaccat 69

                                                                       
Query: 261 ccagggcggcctccgcgccgaggagcaggtgtcaaggcatcgtacagtcatgagcatatt 320
           ||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||  || ||
Sbjct: 70  ccagggcggcctccgcgtcgaggaacaggtttcaaggcatcgtacaatcatgaatatttt 129

                                                                       
Query: 321 tgataaggagccacggatcaacaaagatgtttttgttgcgcccagtgcatctgtcattgg 380
           ||| || |||||| ||||| | | |||||| |||||||| ||||||||| | ||||||||
Sbjct: 130 tgagaaagagccaaggatccatagagatgtgtttgttgctcccagtgcagcagtcattgg 189

                                                                       
Query: 381 tgatgttgagattggacatggatcatcaatctggtatggctccgttttgagaggtgatgt 440
            |||||||||||||| |||||||| ||||||||||| || ||| | ||||||||||||||
Sbjct: 190 ggatgttgagattggtcatggatcgtcaatctggtacggatccatattgagaggtgatgt 249

                                   
Query: 441 caacagtattcgtattggatctgg 464
           |||||| |||| ||||||||||||
Sbjct: 250 caacagcattcatattggatctgg 273



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  202 bits (102), Expect = 8e-49
 Identities = 111/114 (97%)
 Strand = Plus / Plus

                                                                           
Query: 175     atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
               ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 3548389 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 3548448

                                                                     
Query: 235     gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3548449 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcag 3548502



 Score =  119 bits (60), Expect = 9e-24
 Identities = 123/144 (85%)
 Strand = Plus / Plus

                                                                           
Query: 292     tcaaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgtt 351
               ||||||||||| ||  |||||| ||||||||| || |||||  |  || |||| ||||||
Sbjct: 3549284 tcaaggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgtt 3549343

                                                                           
Query: 352     tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
               |||||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 3549344 tttgttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatc 3549403

                                       
Query: 412     tggtatggctccgttttgagaggt 435
               ||||| |||||| |||| ||||||
Sbjct: 3549404 tggtacggctccattttaagaggt 3549427



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 432     aggtgatgtcaacagtattcgtattggatctggatc 467
               ||||||||||||||| |||| |||||||||||||||
Sbjct: 3550085 aggtgatgtcaacagcattcatattggatctggatc 3550120



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  202 bits (102), Expect = 8e-49
 Identities = 111/114 (97%)
 Strand = Plus / Plus

                                                                           
Query: 175     atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
               ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 3548334 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 3548393

                                                                     
Query: 235     gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288
               ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3548394 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcag 3548447



 Score =  119 bits (60), Expect = 9e-24
 Identities = 123/144 (85%)
 Strand = Plus / Plus

                                                                           
Query: 292     tcaaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgtt 351
               ||||||||||| ||  |||||| ||||||||| || |||||  |  || |||| ||||||
Sbjct: 3549229 tcaaggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgtt 3549288

                                                                           
Query: 352     tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
               |||||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 3549289 tttgttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatc 3549348

                                       
Query: 412     tggtatggctccgttttgagaggt 435
               ||||| |||||| |||| ||||||
Sbjct: 3549349 tggtacggctccattttaagaggt 3549372



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 432     aggtgatgtcaacagtattcgtattggatctggatc 467
               ||||||||||||||| |||| |||||||||||||||
Sbjct: 3550030 aggtgatgtcaacagcattcatattggatctggatc 3550065



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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score =  202 bits (102), Expect = 8e-49
 Identities = 111/114 (97%)
 Strand = Plus / Plus

                                                                         
Query: 175   atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
             ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 63317 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 63376

                                                                   
Query: 235   gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 63377 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcag 63430



 Score =  119 bits (60), Expect = 9e-24
 Identities = 123/144 (85%)
 Strand = Plus / Plus

                                                                         
Query: 292   tcaaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgtt 351
             ||||||||||| ||  |||||| ||||||||| || |||||  |  || |||| ||||||
Sbjct: 64212 tcaaggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgtt 64271

                                                                         
Query: 352   tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
             |||||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 64272 tttgttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatc 64331

                                     
Query: 412   tggtatggctccgttttgagaggt 435
             ||||| |||||| |||| ||||||
Sbjct: 64332 tggtacggctccattttaagaggt 64355



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 432   aggtgatgtcaacagtattcgtattggatctggatc 467
             ||||||||||||||| |||| |||||||||||||||
Sbjct: 65013 aggtgatgtcaacagcattcatattggatctggatc 65048



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  170 bits (86), Expect = 3e-39
 Identities = 107/114 (93%)
 Strand = Plus / Minus

                                                                            
Query: 175      atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
                ||||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 26725015 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 26724956

                                                                      
Query: 235      gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288
                ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 26724955 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcag 26724902



 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                            
Query: 293      caaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttt 352
                |||||||||| ||| |||||| ||||||||| || |||||  | ||| |||| |||||||
Sbjct: 26724330 caaggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttt 26724271

                                                                            
Query: 353      ttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatct 412
                ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| |||||||
Sbjct: 26724270 ttgttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatct 26724211

                                       
Query: 413      ggtatggctccgttttgagaggt 435
                ||||||||||| |||| ||||||
Sbjct: 26724210 ggtatggctccattttaagaggt 26724188



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 432      aggtgatgtcaacagtattcgtattgga 459
                ||||||||||||||| |||| |||||||
Sbjct: 26723356 aggtgatgtcaacagcattcatattgga 26723329



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>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1003_C06
          Length = 143168

 Score =  170 bits (86), Expect = 3e-39
 Identities = 107/114 (93%)
 Strand = Plus / Minus

                                                                         
Query: 175   atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
             ||||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 71872 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 71813

                                                                   
Query: 235   gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288
             ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 71812 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcag 71759



 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                         
Query: 293   caaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttt 352
             |||||||||| ||| |||||| ||||||||| || |||||  | ||| |||| |||||||
Sbjct: 71187 caaggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttt 71128

                                                                         
Query: 353   ttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatct 412
             ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| |||||||
Sbjct: 71127 ttgttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatct 71068

                                    
Query: 413   ggtatggctccgttttgagaggt 435
             ||||||||||| |||| ||||||
Sbjct: 71067 ggtatggctccattttaagaggt 71045



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 432   aggtgatgtcaacagtattcgtattgga 459
             ||||||||||||||| |||| |||||||
Sbjct: 70213 aggtgatgtcaacagcattcatattgga 70186



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>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0524G08
          Length = 146690

 Score =  170 bits (86), Expect = 3e-39
 Identities = 107/114 (93%)
 Strand = Plus / Minus

                                                                          
Query: 175    atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234
              ||||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 142619 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 142560

                                                                    
Query: 235    gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288
              ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 142559 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcag 142506



 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                          
Query: 293    caaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttt 352
              |||||||||| ||| |||||| ||||||||| || |||||  | ||| |||| |||||||
Sbjct: 141934 caaggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttt 141875

                                                                          
Query: 353    ttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatct 412
              ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| |||||||
Sbjct: 141874 ttgttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatct 141815

                                     
Query: 413    ggtatggctccgttttgagaggt 435
              ||||||||||| |||| ||||||
Sbjct: 141814 ggtatggctccattttaagaggt 141792



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 432    aggtgatgtcaacagtattcgtattgga 459
              ||||||||||||||| |||| |||||||
Sbjct: 140960 aggtgatgtcaacagcattcatattgga 140933



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>ref|NM_187710.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 774

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
           |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 178 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 237

                   
Query: 412 tggtatgg 419
           ||||||||
Sbjct: 238 tggtatgg 245



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 352      tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
                |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 10119445 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 10119504

                        
Query: 412      tggtatgg 419
                ||||||||
Sbjct: 10119505 tggtatgg 10119512



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>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0581F09
          Length = 154248

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 352   tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
             |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 66914 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 66973

                     
Query: 412   tggtatgg 419
             ||||||||
Sbjct: 66974 tggtatgg 66981



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>dbj|AK122051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G12, full
           insert sequence
          Length = 1036

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
           |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 277 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 336

                   
Query: 412 tggtatgg 419
           ||||||||
Sbjct: 337 tggtatgg 344



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>dbj|AK104205.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F03, full
           insert sequence
          Length = 1086

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
           |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 327 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 386

                   
Query: 412 tggtatgg 419
           ||||||||
Sbjct: 387 tggtatgg 394



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>dbj|AK071713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109L19, full
           insert sequence
          Length = 1156

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
           |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 319 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 378

                   
Query: 412 tggtatgg 419
           ||||||||
Sbjct: 379 tggtatgg 386



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>dbj|AK060908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F08, full
           insert sequence
          Length = 1086

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
           |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 327 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 386

                   
Query: 412 tggtatgg 419
           ||||||||
Sbjct: 387 tggtatgg 394



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>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004B13
          Length = 142268

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 352   tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411
             |||||||| || ||||||||| ||||||||||| || |  ||||||| ||| | ||||| 
Sbjct: 44044 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 44103

                     
Query: 412   tggtatgg 419
             ||||||||
Sbjct: 44104 tggtatgg 44111



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>ref|NM_103620.2| Arabidopsis thaliana APFI AT1G47260 (APFI) mRNA, complete cds
          Length = 1750

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402
           |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || 
Sbjct: 306 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 365

                              
Query: 403 tcatcaatctggtatggct 421
           || || || ||||||||||
Sbjct: 366 tcgtcgatttggtatggct 384



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>gb|AY113936.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds
          Length = 868

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402
           |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || 
Sbjct: 169 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 228

                              
Query: 403 tcatcaatctggtatggct 421
           || || || ||||||||||
Sbjct: 229 tcgtcgatttggtatggct 247



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>gb|AY045979.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds
          Length = 1182

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402
           |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || 
Sbjct: 275 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 334

                              
Query: 403 tcatcaatctggtatggct 421
           || || || ||||||||||
Sbjct: 335 tcgtcgatttggtatggct 353



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>emb|BX816589.1|CNS0ADBJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH57ZD01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1092

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402
           |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || 
Sbjct: 252 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 311

                              
Query: 403 tcatcaatctggtatggct 421
           || || || ||||||||||
Sbjct: 312 tcgtcgatttggtatggct 330



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>gb|AC079677.4|AC079677 Arabidopsis thaliana chromosome 1 BAC F8G22 genomic sequence,
            complete sequence
          Length = 42801

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                        
Query: 343  aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402
            |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || 
Sbjct: 7292 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 7351

                               
Query: 403  tcatcaatctggtatggct 421
            || || || ||||||||||
Sbjct: 7352 tcgtcgatttggtatggct 7370



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 110      gcctgcggctgccggcggcgagccc 134
                ||||| |||||||||||||||||||
Sbjct: 12913068 gcctgtggctgccggcggcgagccc 12913044



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>dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1230_H04
          Length = 123818

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 110   gcctgcggctgccggcggcgagccc 134
             ||||| |||||||||||||||||||
Sbjct: 85555 gcctgtggctgccggcggcgagccc 85531



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>ref|XM_421034.1| PREDICTED: Gallus gallus similar to mucin 5 (LOC423100), mRNA
          Length = 7710

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  ggtgatgttgagattggaca 398
            ||||||||||||||||||||
Sbjct: 3800 ggtgatgttgagattggaca 3781



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     cctccgcgccgaggagcagg 289
               ||||||||||||||||||||
Sbjct: 2098347 cctccgcgccgaggagcagg 2098366



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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 265    ggcggcctccgcgccgaggagcaggtgt 292
              ||||||| ||||| ||||||||||||||
Sbjct: 116882 ggcggccaccgcggcgaggagcaggtgt 116855



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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aaagatgtttttgttgcgcc 362
               ||||||||||||||||||||
Sbjct: 2552662 aaagatgtttttgttgcgcc 2552643


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,022,700
Number of Sequences: 3902068
Number of extensions: 3022700
Number of successful extensions: 63318
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62900
Number of HSP's gapped (non-prelim): 412
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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