| Clone Name | bast58b03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150M03, full insert sequence Length = 1238 Score = 359 bits (181), Expect = 6e-96 Identities = 265/293 (90%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 173 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 232 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct: 233 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcagctttca 292 Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354 |||||||| || |||||| ||||||||| || ||||| | || |||| ||||||||| Sbjct: 293 aggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgttttt 352 Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414 ||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 353 gttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatctgg 412 Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattggatctggatc 467 || |||||| |||| ||||||||||||||||| |||| ||||||||||||||| Sbjct: 413 tacggctccattttaagaggtgatgtcaacagcattcatattggatctggatc 465
>dbj|AK058974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D04, full insert sequence Length = 1195 Score = 359 bits (181), Expect = 6e-96 Identities = 265/293 (90%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 175 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 234 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcagctttca 294 Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354 |||||||| || |||||| ||||||||| || ||||| | || |||| ||||||||| Sbjct: 295 aggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgttttt 354 Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414 ||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 355 gttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatctgg 414 Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattggatctggatc 467 || |||||| |||| ||||||||||||||||| |||| ||||||||||||||| Sbjct: 415 tacggctccattttaagaggtgatgtcaacagcattcatattggatctggatc 467
>ref|XM_479312.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1155 Score = 343 bits (173), Expect = 3e-91 Identities = 257/285 (90%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||| ||||| ||||||||||||| ||| ||||||||||| |||||||||||| Sbjct: 83 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 142 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || || Sbjct: 143 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcagctgcca 202 Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354 |||||||| ||| |||||| ||||||||| || ||||| | ||| |||| ||||||||| Sbjct: 203 aggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttttt 262 Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414 ||||| ||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||| Sbjct: 263 gttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatctgg 322 Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattgga 459 ||||||||| |||| ||||||||||||||||| |||| ||||||| Sbjct: 323 tatggctccattttaagaggtgatgtcaacagcattcatattgga 367
>dbj|AK060158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G03, full insert sequence Length = 1155 Score = 343 bits (173), Expect = 3e-91 Identities = 257/285 (90%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||| ||||| ||||||||||||| ||| ||||||||||| |||||||||||| Sbjct: 83 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 142 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || || Sbjct: 143 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcagctgcca 202 Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354 |||||||| ||| |||||| ||||||||| || ||||| | ||| |||| ||||||||| Sbjct: 203 aggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttttt 262 Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414 ||||| ||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||| Sbjct: 263 gttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatctgg 322 Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattgga 459 ||||||||| |||| ||||||||||||||||| |||| ||||||| Sbjct: 323 tatggctccattttaagaggtgatgtcaacagcattcatattgga 367
>gb|AY107290.1| Zea mays PCO063868 mRNA sequence Length = 1381 Score = 337 bits (170), Expect = 2e-89 Identities = 260/290 (89%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 172 atgggtaccctggggcgcgcgatcttcacggtgggcaagtggatccggggcacggggcag 231 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcaggtgtca 294 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| Sbjct: 232 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggaacaggtttca 291 Query: 295 aggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttttt 354 |||||||||||| |||||| || ||||| || |||||| ||||| | | |||||| ||| Sbjct: 292 aggcatcgtacaatcatgaatatttttgagaaagagccaaggatccatagagatgtgttt 351 Query: 355 gttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatctgg 414 ||||| ||||||||| | |||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 352 gttgctcccagtgcagcagtcattggggatgttgagattggtcatggatcgtcaatctgg 411 Query: 415 tatggctccgttttgagaggtgatgtcaacagtattcgtattggatctgg 464 || || ||| | |||||||||||||||||||| |||| |||||||||||| Sbjct: 412 tacggatccatattgagaggtgatgtcaacagcattcatattggatctgg 461
>gb|BT017479.1| Zea mays clone EL01N0408G09.c mRNA sequence Length = 1166 Score = 309 bits (156), Expect = 5e-81 Identities = 237/264 (89%) Strand = Plus / Plus Query: 201 cacggtgggcaagtggatccgtggcacggggcaggccatggaccgcctcggatccaccat 260 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10 cacggtgggcaagtggatccggggcacggggcaggccatggaccgcctcggatccaccat 69 Query: 261 ccagggcggcctccgcgccgaggagcaggtgtcaaggcatcgtacagtcatgagcatatt 320 ||||||||||||||||| |||||| ||||| ||||||||||||||| |||||| || || Sbjct: 70 ccagggcggcctccgcgtcgaggaacaggtttcaaggcatcgtacaatcatgaatatttt 129 Query: 321 tgataaggagccacggatcaacaaagatgtttttgttgcgcccagtgcatctgtcattgg 380 ||| || |||||| ||||| | | |||||| |||||||| ||||||||| | |||||||| Sbjct: 130 tgagaaagagccaaggatccatagagatgtgtttgttgctcccagtgcagcagtcattgg 189 Query: 381 tgatgttgagattggacatggatcatcaatctggtatggctccgttttgagaggtgatgt 440 |||||||||||||| |||||||| ||||||||||| || ||| | |||||||||||||| Sbjct: 190 ggatgttgagattggtcatggatcgtcaatctggtacggatccatattgagaggtgatgt 249 Query: 441 caacagtattcgtattggatctgg 464 |||||| |||| |||||||||||| Sbjct: 250 caacagcattcatattggatctgg 273
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 202 bits (102), Expect = 8e-49 Identities = 111/114 (97%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 3548389 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 3548448 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3548449 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcag 3548502 Score = 119 bits (60), Expect = 9e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 292 tcaaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgtt 351 ||||||||||| || |||||| ||||||||| || ||||| | || |||| |||||| Sbjct: 3549284 tcaaggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgtt 3549343 Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| |||||| Sbjct: 3549344 tttgttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatc 3549403 Query: 412 tggtatggctccgttttgagaggt 435 ||||| |||||| |||| |||||| Sbjct: 3549404 tggtacggctccattttaagaggt 3549427 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 432 aggtgatgtcaacagtattcgtattggatctggatc 467 ||||||||||||||| |||| ||||||||||||||| Sbjct: 3550085 aggtgatgtcaacagcattcatattggatctggatc 3550120
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 202 bits (102), Expect = 8e-49 Identities = 111/114 (97%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 3548334 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 3548393 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3548394 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcag 3548447 Score = 119 bits (60), Expect = 9e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 292 tcaaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgtt 351 ||||||||||| || |||||| ||||||||| || ||||| | || |||| |||||| Sbjct: 3549229 tcaaggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgtt 3549288 Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| |||||| Sbjct: 3549289 tttgttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatc 3549348 Query: 412 tggtatggctccgttttgagaggt 435 ||||| |||||| |||| |||||| Sbjct: 3549349 tggtacggctccattttaagaggt 3549372 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 432 aggtgatgtcaacagtattcgtattggatctggatc 467 ||||||||||||||| |||| ||||||||||||||| Sbjct: 3550030 aggtgatgtcaacagcattcatattggatctggatc 3550065
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 202 bits (102), Expect = 8e-49 Identities = 111/114 (97%) Strand = Plus / Plus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 63317 atggggaccctcgggcgcgcgatctacacggtggggaagtggatccgcggcacggggcag 63376 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 63377 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgaggagcag 63430 Score = 119 bits (60), Expect = 9e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 292 tcaaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgtt 351 ||||||||||| || |||||| ||||||||| || ||||| | || |||| |||||| Sbjct: 64212 tcaaggcatcgcacgatcatgaacatatttgagaaagagcccagagtccacaaggatgtt 64271 Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| ||||||||| |||| ||||| ||||||||||| ||||||||||| |||||| Sbjct: 64272 tttgttgctcccagtgcagctgtgattggcgatgttgagatcggacatggatcctcaatc 64331 Query: 412 tggtatggctccgttttgagaggt 435 ||||| |||||| |||| |||||| Sbjct: 64332 tggtacggctccattttaagaggt 64355 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 432 aggtgatgtcaacagtattcgtattggatctggatc 467 ||||||||||||||| |||| ||||||||||||||| Sbjct: 65013 aggtgatgtcaacagcattcatattggatctggatc 65048
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Minus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||| ||||| ||||||||||||| ||| ||||||||||| |||||||||||| Sbjct: 26725015 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 26724956 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct: 26724955 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcag 26724902 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 293 caaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttt 352 |||||||||| ||| |||||| ||||||||| || ||||| | ||| |||| ||||||| Sbjct: 26724330 caaggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttt 26724271 Query: 353 ttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatct 412 ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| ||||||| Sbjct: 26724270 ttgttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatct 26724211 Query: 413 ggtatggctccgttttgagaggt 435 ||||||||||| |||| |||||| Sbjct: 26724210 ggtatggctccattttaagaggt 26724188 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 432 aggtgatgtcaacagtattcgtattgga 459 ||||||||||||||| |||| ||||||| Sbjct: 26723356 aggtgatgtcaacagcattcatattgga 26723329
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Minus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||| ||||| ||||||||||||| ||| ||||||||||| |||||||||||| Sbjct: 71872 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 71813 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct: 71812 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcag 71759 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 293 caaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttt 352 |||||||||| ||| |||||| ||||||||| || ||||| | ||| |||| ||||||| Sbjct: 71187 caaggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttt 71128 Query: 353 ttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatct 412 ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| ||||||| Sbjct: 71127 ttgttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatct 71068 Query: 413 ggtatggctccgttttgagaggt 435 ||||||||||| |||| |||||| Sbjct: 71067 ggtatggctccattttaagaggt 71045 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 432 aggtgatgtcaacagtattcgtattgga 459 ||||||||||||||| |||| ||||||| Sbjct: 70213 aggtgatgtcaacagcattcatattgga 70186
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Minus Query: 175 atggggaccctcgggcgcgcgatctacacggtgggcaagtggatccgtggcacggggcag 234 ||||||||||| ||||| ||||||||||||| ||| ||||||||||| |||||||||||| Sbjct: 142619 atggggaccctggggcgggcgatctacacggcggggaagtggatccgcggcacggggcag 142560 Query: 235 gccatggaccgcctcggatccaccatccagggcggcctccgcgccgaggagcag 288 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct: 142559 gccatggaccgcctcggatccaccatccagggcggcctccgcgtcgacgagcag 142506 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 293 caaggcatcgtacagtcatgagcatatttgataaggagccacggatcaacaaagatgttt 352 |||||||||| ||| |||||| ||||||||| || ||||| | ||| |||| ||||||| Sbjct: 141934 caaggcatcgcacaatcatgaacatatttgagaaagagcccagaatccacaaggatgttt 141875 Query: 353 ttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatct 412 ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||| ||||||| Sbjct: 141874 ttgttgctcccagtgcagctgtgattggtgatattgagattggacatggatcctcaatct 141815 Query: 413 ggtatggctccgttttgagaggt 435 ||||||||||| |||| |||||| Sbjct: 141814 ggtatggctccattttaagaggt 141792 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 432 aggtgatgtcaacagtattcgtattgga 459 ||||||||||||||| |||| ||||||| Sbjct: 140960 aggtgatgtcaacagcattcatattgga 140933
>ref|NM_187710.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 774 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 178 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 237 Query: 412 tggtatgg 419 |||||||| Sbjct: 238 tggtatgg 245
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 10119445 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 10119504 Query: 412 tggtatgg 419 |||||||| Sbjct: 10119505 tggtatgg 10119512
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 66914 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 66973 Query: 412 tggtatgg 419 |||||||| Sbjct: 66974 tggtatgg 66981
>dbj|AK122051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G12, full insert sequence Length = 1036 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 277 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 336 Query: 412 tggtatgg 419 |||||||| Sbjct: 337 tggtatgg 344
>dbj|AK104205.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F03, full insert sequence Length = 1086 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 327 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 386 Query: 412 tggtatgg 419 |||||||| Sbjct: 387 tggtatgg 394
>dbj|AK071713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109L19, full insert sequence Length = 1156 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 319 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 378 Query: 412 tggtatgg 419 |||||||| Sbjct: 379 tggtatgg 386
>dbj|AK060908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F08, full insert sequence Length = 1086 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 327 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 386 Query: 412 tggtatgg 419 |||||||| Sbjct: 387 tggtatgg 394
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 48.1 bits (24), Expect = 0.027 Identities = 57/68 (83%) Strand = Plus / Plus Query: 352 tttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatggatcatcaatc 411 |||||||| || ||||||||| ||||||||||| || | ||||||| ||| | ||||| Sbjct: 44044 tttgttgccccaagtgcatctctcattggtgatattcaagttggacaaggagcttcaatt 44103 Query: 412 tggtatgg 419 |||||||| Sbjct: 44104 tggtatgg 44111
>ref|NM_103620.2| Arabidopsis thaliana APFI AT1G47260 (APFI) mRNA, complete cds Length = 1750 Score = 46.1 bits (23), Expect = 0.11 Identities = 65/79 (82%) Strand = Plus / Plus Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402 |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || Sbjct: 306 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 365 Query: 403 tcatcaatctggtatggct 421 || || || |||||||||| Sbjct: 366 tcgtcgatttggtatggct 384
>gb|AY113936.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds Length = 868 Score = 46.1 bits (23), Expect = 0.11 Identities = 65/79 (82%) Strand = Plus / Plus Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402 |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || Sbjct: 169 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 228 Query: 403 tcatcaatctggtatggct 421 || || || |||||||||| Sbjct: 229 tcgtcgatttggtatggct 247
>gb|AY045979.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds Length = 1182 Score = 46.1 bits (23), Expect = 0.11 Identities = 65/79 (82%) Strand = Plus / Plus Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402 |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || Sbjct: 275 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 334 Query: 403 tcatcaatctggtatggct 421 || || || |||||||||| Sbjct: 335 tcgtcgatttggtatggct 353
>emb|BX816589.1|CNS0ADBJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH57ZD01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1092 Score = 46.1 bits (23), Expect = 0.11 Identities = 65/79 (82%) Strand = Plus / Plus Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402 |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || Sbjct: 252 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 311 Query: 403 tcatcaatctggtatggct 421 || || || |||||||||| Sbjct: 312 tcgtcgatttggtatggct 330
>gb|AC079677.4|AC079677 Arabidopsis thaliana chromosome 1 BAC F8G22 genomic sequence, complete sequence Length = 42801 Score = 46.1 bits (23), Expect = 0.11 Identities = 65/79 (82%) Strand = Plus / Plus Query: 343 aaagatgtttttgttgcgcccagtgcatctgtcattggtgatgttgagattggacatgga 402 |||||||| ||||| || || ||||| ||||| |||||||||||| |||| ||| | || Sbjct: 7292 aaagatgtgtttgtggctccgagtgcttctgttattggtgatgttcagatcggaaaaggc 7351 Query: 403 tcatcaatctggtatggct 421 || || || |||||||||| Sbjct: 7352 tcgtcgatttggtatggct 7370
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 gcctgcggctgccggcggcgagccc 134 ||||| ||||||||||||||||||| Sbjct: 12913068 gcctgtggctgccggcggcgagccc 12913044
>dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1230_H04 Length = 123818 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 gcctgcggctgccggcggcgagccc 134 ||||| ||||||||||||||||||| Sbjct: 85555 gcctgtggctgccggcggcgagccc 85531
>ref|XM_421034.1| PREDICTED: Gallus gallus similar to mucin 5 (LOC423100), mRNA Length = 7710 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ggtgatgttgagattggaca 398 |||||||||||||||||||| Sbjct: 3800 ggtgatgttgagattggaca 3781
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctccgcgccgaggagcagg 289 |||||||||||||||||||| Sbjct: 2098347 cctccgcgccgaggagcagg 2098366
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence Length = 152439 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 265 ggcggcctccgcgccgaggagcaggtgt 292 ||||||| ||||| |||||||||||||| Sbjct: 116882 ggcggccaccgcggcgaggagcaggtgt 116855
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 aaagatgtttttgttgcgcc 362 |||||||||||||||||||| Sbjct: 2552662 aaagatgtttttgttgcgcc 2552643 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,022,700 Number of Sequences: 3902068 Number of extensions: 3022700 Number of successful extensions: 63318 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62900 Number of HSP's gapped (non-prelim): 412 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)