>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score =  103 bits (256), Expect(2) = 1e-22
 Identities = 46/63 (73%), Positives = 54/63 (85%)
 Frame = +3

Query: 216 ALKFLIYGRTGWIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTHVFNAAGVT 395
           +LKFLIYG+TGW+GGLLGKLC  QGIP+ YG GRLE+RA L ADI  + P+HVFNAAG+T
Sbjct: 379 SLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLT 438

Query: 396 GRP 404
           GRP
Sbjct: 439 GRP 441



 Score = 21.6 bits (44), Expect(2) = 1e-22
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 407 VDWCETH 427
           VDWCE+H
Sbjct: 443 VDWCESH 449

>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score =  102 bits (255), Expect(2) = 2e-22
 Identities = 48/71 (67%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
 Frame = +3

Query: 195 TNGS-SPPALKFLIYGRTGWIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTH 371
           +NG+   P+LKFLIYG+TGWIGGLLGK+C  QGI + YG GRLE+R+ L  DI  V PTH
Sbjct: 376 SNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTH 435

Query: 372 VFNAAGVTGRP 404
           VFN+AGVTGRP
Sbjct: 436 VFNSAGVTGRP 446



 Score = 21.6 bits (44), Expect(2) = 2e-22
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 407 VDWCETH 427
           VDWCE+H
Sbjct: 448 VDWCESH 454

>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score =  102 bits (254), Expect(2) = 2e-22
 Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 2/71 (2%)
 Frame = +3

Query: 198 NGSS--PPALKFLIYGRTGWIGGLLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTH 371
           NG S    +LKFLIYG+TGW+GGLLGKLC  QGI + YG GRLE+RA L ADI  + PTH
Sbjct: 374 NGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTH 433

Query: 372 VFNAAGVTGRP 404
           VFNAAG+TGRP
Sbjct: 434 VFNAAGLTGRP 444



 Score = 21.6 bits (44), Expect(2) = 2e-22
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 407 VDWCETH 427
           VDWCE+H
Sbjct: 446 VDWCESH 452

>TILS_XYLFT (Q87BE2) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 437

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 68  QRILSSRLPIIIPAPSRLHL---DLATTPPFPLPSRISPFRHGDLHQRLLAAGAQVPHLR 238
           Q + S   P+I+P   +LHL   D  T P FP P R+   R G   +RL+  G    H  
Sbjct: 322 QPLWSGTAPLILPDGGQLHLESTDHETVPGFPHPLRVRARRGG---ERLILPGRTHSHPL 378

Query: 239 PHRL-DRGSP 265
            H L D G P
Sbjct: 379 KHLLQDVGIP 388

>ARLY_HELHP (Q7VFF8) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 472

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENR 329
           P +  L+ G++G + G L+G LC  +G+PFAY     E++
Sbjct: 286 PDVPELLRGKSGRVYGELMGLLCVMKGLPFAYNKDTQEDK 325

>REPS2_MOUSE (Q80XA6) RalBP1-associated Eps domain-containing protein 2|
           (RalBP1-interacting protein 2) (Partner of RalBP1)
          Length = 521

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 98  IIPAPSRLHLDLATTPPFPLPSRISPFRHGDLHQRLLAAGAQVPHLRPHRLD 253
           ++P P  L       PP P P++  P    DLH +L  A +Q     P ++D
Sbjct: 372 LLPPPPAL-------PPRPCPTQSEPVSEADLHSQLNRAPSQAAESSPTKMD 416

>ARLY_OCEIH (Q8ELT9) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 459

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENR 329
           P +  L+ G+TG + G L+G L T +G+P AY     E++
Sbjct: 285 PDVAELVRGKTGRVYGHLMGMLTTLKGLPLAYNKDMQEDK 324

>ISPE_GLOVI (Q7NPF3) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 302

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 161 SRISPFRHGDLHQRLLAAGAQVPHLRPHRLDRGS 262
           +RI+P  H DL + +L A  QV  LR H +  G+
Sbjct: 212 ARIAPLLHNDLERAVLPAYPQVSALREHLVSAGA 245

>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 68   QRILSSRLPIIIPAPSRLHLDLATTPPFPLPSRISPFR 181
            +R L  RLP   P    L L L T PP P P    P+R
Sbjct: 1441 RRSLLHRLPPTAPGVGPLLLQLGTEPPAPHPGVSKPWR 1478

>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +2

Query: 83  SRLPIIIPAPSRLHLDLATTPPFPLPSRISPFRHGD--LHQRLLAAGAQVPHLRPHRLDR 256
           S LP+ +P P  + + L  + P P+  +  P  H     H   ++    + H   H+L  
Sbjct: 120 SVLPVTVPVPVPVSVPLPVSVPVPVSVKGHPISHTHQIAHTHQISHSHPISHPHHHQLSF 179

Query: 257 GSPRQ 271
             P Q
Sbjct: 180 AHPTQ 184

>MUTL_THET8 (Q9RA54) DNA mismatch repair protein mutL|
          Length = 545

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 267 GKLCTAQGIPFAYGAGRLENRAQL-EADIDEVAPTHVFNAAGVTGRPTS 410
           G+L   + +P AYGAG LE +  +   ++    P  +F A  V GRP +
Sbjct: 201 GRLLAKRLLPLAYGAGGLEVQGLVSRPEVSRTRPDRLFLA--VNGRPVA 247

>ARLY_LACPL (P59617) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 467

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENR 329
           P +  LI G++G + G L+G L   +GIP AY     E++
Sbjct: 288 PDMAELIRGKSGRVYGNLMGLLTVMKGIPLAYNKDLQEDK 327

>ARLY1_RHILO (Q98G36) Argininosuccinate lyase 1 (EC 4.3.2.1) (Arginosuccinase 1)|
           (ASAL 1)
          Length = 466

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 228 LIYGRTGWIGG-LLGKLCTAQGIPFAYGAGRLENRAQLEADIDEVAPTHVFNAAGVTG 398
           L+ G+TG + G L+G L   +G+P  YG    E++      + + A T     A +TG
Sbjct: 297 LVRGKTGRVNGHLVGLLTVMKGMPLTYGKDMQEDK----ESVFDAAETLDLMLAAMTG 350

>ARLY_GLOVI (Q7NLS0) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 468

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 PALKFLIYGRTGWI-GGLLGKLCTAQGIPFAYGAGRLENR 329
           P +  L+ G+TG I G L+G L   +G+P AY     E++
Sbjct: 287 PDVPELVRGKTGRIFGHLMGMLTVLKGLPLAYNKDLQEDK 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,858,688
Number of Sequences: 219361
Number of extensions: 635107
Number of successful extensions: 2356
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2354
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)