ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58a10 |
|---|---|
| Clone Library Name | barley_pub |
>Y2083_MYCTU (Q10691) Hypothetical protein Rv2083/MT2145| Length = 314 Score = 33.5 bits (75), Expect = 0.27 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Frame = +2 Query: 38 PITTPLGQPDGWHYSPAEQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNL-- 211 P TTP G P P A+ S + P PP G + P+ + L Sbjct: 199 PPTTPAGAPTKSATMPPPGGASPASAHMGAAGMPMVPPGAMGARGEGSGQEKPVEKRLTA 258 Query: 212 PGVPNRQPLKG 244 P VPN QP+KG Sbjct: 259 PAVPNGQPVKG 269
>CDX1_MOUSE (P18111) Homeobox protein CDX-1 (Caudal-type homeobox protein 1)| Length = 268 Score = 33.1 bits (74), Expect = 0.36 Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 9/94 (9%) Frame = +2 Query: 14 HVTRAQLLPIT--TPLGQP-DGWH--YSPAEQAAAAVSRCKAVSTPPDHPPRVA----GP 166 HV A P T P P D W Y P A+AA A PPD P A GP Sbjct: 50 HVEPAPAPPPTWAAPFPAPKDDWAAAYGPGPTASAASPAPLAFGPPPDFSPVPAPPGPGP 109 Query: 167 PAMRGRRRLPLLQNLPGVPNRQPLKGIQYGIAGA 268 + P + PG P R P + ++ +A A Sbjct: 110 GILAQSLGAPGAPSSPGAPRRTPYEWMRRSVAAA 143
>COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor| Length = 1329 Score = 32.7 bits (73), Expect = 0.46 Identities = 23/59 (38%), Positives = 25/59 (42%) Frame = +2 Query: 89 EQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKGIQYGIAG 265 E A VS C S P PP GPP + GR P Q PG P +P Q G G Sbjct: 1062 ETCPAFVSACSCSSETPG-PPGPQGPPGLPGRNGTPGEQGFPG-PRGEPGPPGQMGPEG 1118
>AP180_HUMAN (O60641) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) Length = 907 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 12/69 (17%) Frame = -2 Query: 430 SGSPTQPGQC-WDGGQK--FSGRQWQPWATKRT---------PLAGAAGSSQMARAPSMC 287 SG+ T+ G W+ G+K G WQP T PL GA + + Sbjct: 771 SGTTTKKGDLQWNAGEKKLTGGANWQPKVAPATWSAGVPPSAPLQGAVPPTSSVPPVAGA 830 Query: 286 PTVGDEGAG 260 P+VG GAG Sbjct: 831 PSVGQPGAG 839
>PTPRN_BOVIN (P56722) Receptor-type tyrosine-protein phosphatase-like N| precursor (R-PTP-N) (Islet cell autoantigen 512) (ICA512) Length = 979 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = +2 Query: 119 KAVSTPPDHPPRVAGPPA--MRGRRRLPLLQNLP---GVPNRQP 235 K +ST PP+ AGPPA + ++ PL QN P G P+ +P Sbjct: 423 KELSTGASEPPKAAGPPATPVLVEKKSPLGQNQPTMAGQPSTRP 466
>DAM1_ASHGO (Q75EQ0) DASH complex subunit DAM1 (Outer kinetochore protein DAM1)| Length = 268 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 95 AAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNL 211 AA+ VS + PP PP VA +GRRR +LQ + Sbjct: 197 AASFVSNPTVMGQPPHAPPPVARSNNAKGRRRYSILQQI 235
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Frame = +3 Query: 363 CHCRPENFWPPSQHC-PGCVGLPE 431 CHCRP P + C PG GLPE Sbjct: 2088 CHCRPGTMGPQCRECAPGYWGLPE 2111
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +2 Query: 155 VAGPPAMRGRRRLPLLQNLPGVP--NRQPLKGIQYGIAG 265 + GPP G+ P L LPG P N +P QYG+ G Sbjct: 1272 IYGPPGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPG 1310
>CUC3A_HAECO (P16253) Cuticle collagen 3A3| Length = 295 Score = 30.0 bits (66), Expect = 3.0 Identities = 15/33 (45%), Positives = 15/33 (45%) Frame = +2 Query: 146 PPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKG 244 PP GPP GR P LPGVP P G Sbjct: 99 PPGPPGPPGRPGRPGRPGAPGLPGVPGLPPPDG 131
>INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 510 Score = 29.6 bits (65), Expect = 3.9 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = +2 Query: 2 SPSCHVTRAQL---LPITTPLGQPDGWHYSPAEQAAAAVSRCKAVSTPPDHPPRVAGPPA 172 SPSC RA+ P+ PL P PAE+A AA++ A + P PP+ GP A Sbjct: 33 SPSCGGARAEPPAPSPVPGPLPPPP-----PAERAHAALAAALACAPGPQPPPQ--GPRA 85
>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor| Length = 1775 Score = 29.6 bits (65), Expect = 3.9 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Frame = +2 Query: 38 PITTPLGQPDGWHYSPAEQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQ---N 208 P T + P G SP E+ + +T P PP V GP + G R Q Sbjct: 767 PGQTGMPGPPGEDGSPGERGYTGLKG----NTGPQGPPGVEGPRGLNGPRGEKGNQGAVG 822 Query: 209 LPGVPNRQPLKGI 247 +PG P + L+GI Sbjct: 823 VPGNPGKDGLRGI 835
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 29.6 bits (65), Expect = 3.9 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Frame = +2 Query: 50 PLGQPDGWHYSPAEQAAAAVSRCKAVSTPPDH-----PPRVAGPPAMRGRRRLPLLQNLP 214 P G P G +S + + PP PP GP + G LP L L Sbjct: 355 PPGPPGGGEFSDGPPGPPGLPGREGQPGPPGADGYPGPPGPQGPQGLPGGPGLPGLPGLE 414 Query: 215 GVPNRQPLKGIQYGIAGA 268 G+P + KG GI GA Sbjct: 415 GLPGPKGEKG-DSGIPGA 431
>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9| Length = 705 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = +2 Query: 146 PPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKGIQYG 256 PPR G P RG R P Q G P+R+P G YG Sbjct: 370 PPRGYGGPGPRGGRGPPP-QGYQGGPDRRPSPGAPYG 405
>YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I| Length = 147 Score = 29.6 bits (65), Expect = 3.9 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = -1 Query: 440 GDVLRQPNAAGAVLGRRPEVLRAAVAAVGYEEDPP--GRRRGELPDGAR 300 G + +P G LG+ P L V VGY PP G RG P G R Sbjct: 97 GPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPGFR 145
>POLG_POWVL (Q04538) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3415 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -2 Query: 415 QPGQCWDGGQKFSGRQWQPWATKRTPLAGAAGS 317 Q + W ++ R WQ W + RTP G+A S Sbjct: 2800 QYSESWHEDKEHPYRTWQYWGSYRTPATGSAAS 2832
>AMIA2_MYCTU (P63490) Putative amidase amiA2 (EC 3.5.1.4)| Length = 484 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = -2 Query: 376 GRQWQPWATKRTPLAGAAGSSQMARAPSMCPTVGDEGAG 260 G PW+ + TP + GS+ A + +G +GAG Sbjct: 152 GHTRNPWSRRHTPGGSSGGSAAAVAAGLVTAAIGSDGAG 190
>AMIA2_MYCBO (P63491) Putative amidase amiA2 (EC 3.5.1.4)| Length = 484 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = -2 Query: 376 GRQWQPWATKRTPLAGAAGSSQMARAPSMCPTVGDEGAG 260 G PW+ + TP + GS+ A + +G +GAG Sbjct: 152 GHTRNPWSRRHTPGGSSGGSAAAVAAGLVTAAIGSDGAG 190
>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment) Length = 214 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Frame = +2 Query: 95 AAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGV----PNRQPLKGIQYGI 259 AAAA + P +PP GPP GR P PG+ P +P G GI Sbjct: 135 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGPPPGMRPPMGPPMGI 188
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +2 Query: 137 PDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKG 244 P P V GPP +RG P Q PG Q L+G Sbjct: 661 PQGLPGVPGPPGLRGHSGSPGPQGPPGAVGPQGLRG 696
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 29.3 bits (64), Expect = 5.1 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 16/85 (18%) Frame = +2 Query: 62 PDGWHYSPAEQAAAAVSRCKAVSTPPDHPPRVA--------------GPPAMRGRRRLPL 199 P G+ +P E VS PP P + GPP +G R P Sbjct: 151 PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPG 210 Query: 200 LQNLPGVPNRQPLKGIQ--YGIAGA 268 LPGV + G+ G AGA Sbjct: 211 TPGLPGVKGHRGYPGLDGAKGEAGA 235
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Frame = +2 Query: 95 AAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGV----PNRQPLKGIQYGI 259 AAAA + P +PP GPP GR P PG+ P +P G GI Sbjct: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGPPPGMRPPMGPPMGI 205
>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Frame = +2 Query: 95 AAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGV----PNRQPLKGIQYGI 259 AAAA + P +PP GPP GR P PG+ P +P G GI Sbjct: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGPPPGMRPPMGPPMGI 205
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 137 PDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKG 244 P+ P GPP +G+ +P LPG P RQ KG Sbjct: 851 PNGDPGPLGPPGEKGKLGVP---GLPGYPGRQGPKG 883
>GRB7_MOUSE (Q03160) Growth factor receptor-bound protein 7 (GRB7 adapter| protein) (Epidermal growth factor receptor GRB-7) Length = 535 Score = 29.3 bits (64), Expect = 5.1 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 24/91 (26%) Frame = +2 Query: 80 SPAEQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPL--------------LQNLPG 217 SP +++ C +TPP+ PP PP +R PL +LP Sbjct: 6 SPTHLSSSPEDVCPTPATPPETPPPPDNPPPGDVKRSQPLPIPSSRKLREEEFQATSLPS 65 Query: 218 VPN----------RQPLKGIQYGIAGALVPD 280 +PN ++P+ G G G L D Sbjct: 66 IPNPFPELCSPPSQKPILGGSSGARGLLPRD 96
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 29.3 bits (64), Expect = 5.1 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 16/85 (18%) Frame = +2 Query: 62 PDGWHYSPAEQAAAAVSRCKAVSTPPDHPPRVA--------------GPPAMRGRRRLPL 199 P G+ +P E VS PP P + GPP +G R P Sbjct: 35 PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPG 94 Query: 200 LQNLPGVPNRQPLKGIQ--YGIAGA 268 LPGV + G+ G AGA Sbjct: 95 TPGLPGVKGHRGYPGLDGAKGEAGA 119
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +2 Query: 80 SPAEQAAAAVSRCKAVST-PPDHPPRVAGPPAMRGR-RRLPLLQNLPGVPNRQPLKGIQY 253 S A+QAAAA + AV+ PP + G+ + +PLL ++ +QP G Sbjct: 827 STAQQAAAAANATSAVTAPPPQQTSNTSNAAVTTGQGQTMPLLSHMTSYEQQQPNLGAAA 886 Query: 254 GIAGA 268 A A Sbjct: 887 AAAAA 891
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = -2 Query: 430 SGSPTQPGQCWDGGQKF----SGRQWQPWATKRTPLAGAAGSSQMARA-PSMCPTVGDEG 266 SG+P QPGQ GQ+ +G QP + AGA G+ A + CP G Sbjct: 217 SGAPGQPGQSGGQGQQGPAGPAGPDGQPGQPGQDGQAGAPGNDGAPGADAAYCPCPSRSG 276 Query: 265 AGDAV 251 + AV Sbjct: 277 SSSAV 281
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 14/76 (18%) Frame = +2 Query: 62 PDGWHYSPAEQAAAAVSRCKAVSTPPDHP--------------PRVAGPPAMRGRRRLPL 199 P G+ P E S PP P P GPP +G R LP Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG 257 Query: 200 LQNLPGVPNRQPLKGI 247 LPG+ + G+ Sbjct: 258 TAGLPGMKGHRGFSGL 273
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 28.9 bits (63), Expect = 6.7 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 137 PDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKGI--QYGIAGALVP 277 P PP +AGPP GR P + PG KG + G AGA P Sbjct: 561 PMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGAPGP 609 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 14/76 (18%) Frame = +2 Query: 62 PDGWHYSPAEQAAAAVSRCKAVSTPPDHP--------------PRVAGPPAMRGRRRLPL 199 P G+ P E S PP P P GPP +G R LP Sbjct: 36 PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG 95 Query: 200 LQNLPGVPNRQPLKGI 247 LPG+ + G+ Sbjct: 96 TAGLPGMKGHRGFSGL 111
>Y3743_MYCBO (P0A655) UPF0233 protein Mb3743c| Length = 133 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/54 (29%), Positives = 22/54 (40%) Frame = +2 Query: 86 AEQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKGI 247 A++ A++ PP PP G P M G +PG P P+ GI Sbjct: 89 AQERLGALAGAMRPPAPPAAPPGAPGMPGMPG---------MPGAPGAPPVPGI 133
>Y3716_MYCTU (P0A654) UPF0233 protein Rv3716c/MT3819| Length = 133 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/54 (29%), Positives = 22/54 (40%) Frame = +2 Query: 86 AEQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKGI 247 A++ A++ PP PP G P M G +PG P P+ GI Sbjct: 89 AQERLGALAGAMRPPAPPAAPPGAPGMPGMPG---------MPGAPGAPPVPGI 133
>FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear factor) (MNF)| Length = 617 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +3 Query: 282 VGHIEGARAIWELPAAPARGVLFVAHGCHCRPENFW-PPSQHCPGCVGLPED 434 VG GARA+ L +AP VL A P PP+Q PG LP + Sbjct: 4 VGEDSGARALLALRSAPCSPVLCAAAAAAAFPATTSPPPAQPPPGPPALPAE 55
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Frame = +2 Query: 56 GQPDGWHYSPAEQAAAAVSRCKAVSTPPDHP----PRVAGPPAMRGRRRLPLLQNLPG 217 G G P+E A + S PP P P GPP + + R+P + PG Sbjct: 2260 GPSQGPAAPPSEPKPHAAVFARVASPPPGAPEKRVPSAGGPPVLAEKARVPTVPPRPG 2317 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +2 Query: 104 AVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKGIQYGIAGALVP 277 A+ C++ PP P A A GR+R P Q + +P P G+ GA VP Sbjct: 603 AIQECRSPVPPPAADPPEARTKAPPGRKREPPAQAVRFLPWATP------GLEGAAVP 654
>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)| Length = 1374 Score = 28.9 bits (63), Expect = 6.7 Identities = 24/82 (29%), Positives = 29/82 (35%) Frame = +2 Query: 5 PSCHVTRAQLLPITTPLGQPDGWHYSPAEQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGR 184 PS R Q L + P P + Y P + S A + P P V PP M Sbjct: 29 PSAPSFRPQNLRLLHPQQPPVQYQYEPPSAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPS 88 Query: 185 RRLPLLQNLPGVPNRQPLKGIQ 250 + P LP P R P Q Sbjct: 89 AQGP----LPPCPIRPPFPNHQ 106
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 14/76 (18%) Frame = +2 Query: 62 PDGWHYSPAEQAAAAVSRCKAVSTPPDHP--------------PRVAGPPAMRGRRRLPL 199 P G+ P E S PP P P GPP +G R LP Sbjct: 194 PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG 253 Query: 200 LQNLPGVPNRQPLKGI 247 LPG+ + G+ Sbjct: 254 TAGLPGMKGHRGFSGL 269
>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 231 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Frame = +2 Query: 95 AAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGV----PNRQPLKGIQYGI 259 AAAA + P +PP GPP GR P PG+ P +P G G+ Sbjct: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGPPPGMRPPMGPPMGL 205
>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) Length = 516 Score = 28.5 bits (62), Expect = 8.7 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +2 Query: 62 PDGWHYSPAEQAAAAVSRCKAVSTPP---DHPPRVAGPPAMRGRRRLPLLQNLPGVP-NR 229 P H A+ AAA +R V PP DH P PP R R+ P ++ P P NR Sbjct: 93 PFSHHQHAAKPAAAEPARDPDVWPPPTPVDHRP---SPPYQRAARKDPPRRSEPSKPANR 149 Query: 230 QP 235 P Sbjct: 150 AP 151
>LAMC1_MOUSE (P02468) Laminin gamma-1 chain precursor (Laminin B2 chain)| Length = 1607 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%) Frame = +3 Query: 348 FVAHGCHCRPENF-----WPPSQHCPGCVGLPEDVAITAR 452 FV + C EN+ WP Q CP C L +D A R Sbjct: 1005 FVGNRCDQCEENYFYNRSWPGCQECPACYRLVKDKAAEHR 1044
>SYD_CHLCH (Q3AS30) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 605 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = -1 Query: 416 AAGAVLGRRPEVLRAAVAAVGYEEDPPGRRRGELPDGARALDVPH 282 ++GA+ +PE++ A A GY + +R G + + + PH Sbjct: 496 SSGAIRNHKPEIMYKAFAIAGYSREEVDQRFGHMIEAFKLGAPPH 540
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 28.5 bits (62), Expect = 8.7 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Frame = +2 Query: 23 RAQLLPITTPLGQPDGWHYSPAEQAAAAVSRCKAVSTPPD---------HPPRVAGPPAM 175 R+ L+P + LG P H S + + + C TPP HP + PP Sbjct: 234 RSSLVP--SDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVS 291 Query: 176 RGRRRLPL-LQNLPGVP 223 LPL L L G P Sbjct: 292 SATMHLPLVLGPLGGAP 308
>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 732 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = +2 Query: 41 ITTPLGQPDGWHYSPAEQAAAAVSRCKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGV 220 I TP G SPA++ + +R A +TP P +G P G R PG Sbjct: 442 IATPRGAA-----SPAQKGTSNATRIPAKTTPSPKTPPGSGEPPKSGERSGYSSPGSPGT 496 Query: 221 P 223 P Sbjct: 497 P 497
>MARCO_HUMAN (Q9UEW3) Macrophage receptor MARCO (Macrophage receptor with| collagenous structure) (Scavenger receptor class A member 2) Length = 520 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = +2 Query: 83 PAEQAAAAVSRCKAVSTP--PDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQPLKGIQYG 256 PAE+ A + P P PP V G ++G + P Q G P Q KG + G Sbjct: 174 PAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSK-G 232 Query: 257 IAGALVP 277 G + P Sbjct: 233 DGGLIGP 239
>YRF2_CAEEL (Q09578) Putative cuticle collagen K03H9.2| Length = 285 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +2 Query: 116 CKAVSTPPDHPPRVAGPPAMRGRRRLPLLQNLPGVPNRQP 235 C+ ++T P + GP G+ LP + PG+P P Sbjct: 78 CEYINTCPPGRIGITGPDGQPGKDGLPGMPGSPGIPGELP 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,361,505 Number of Sequences: 219361 Number of extensions: 1064688 Number of successful extensions: 5069 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 4117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5011 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
