ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast58a09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184292.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1833 Score = 107 bits (54), Expect = 3e-20 Identities = 110/129 (85%), Gaps = 6/129 (4%) Strand = Plus / Plus Query: 289 ctgcggctccactcccgggacttcctcccggaggagcaggg------gcggcacgagagc 342 |||||||||||||||||||||||| | |||||||||||||| |||||||| ||| Sbjct: 278 ctgcggctccactcccgggacttcttgccggaggagcaggggcggcagcggcacgccagc 337 Query: 343 tacagctccctggtgctggcccgcctgcgccgcgactcggcccgggccgccgcgctgtcc 402 ||||| || || |||||||| ||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 338 tacaggtcactcgtgctggctcgcctccgccgcgactccgcccgcgccgccgcggtgtcg 397 Query: 403 gcccgcgcg 411 ||||||||| Sbjct: 398 gcccgcgcg 406
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 3e-20 Identities = 110/129 (85%), Gaps = 6/129 (4%) Strand = Plus / Plus Query: 289 ctgcggctccactcccgggacttcctcccggaggagcaggg------gcggcacgagagc 342 |||||||||||||||||||||||| | |||||||||||||| |||||||| ||| Sbjct: 2119765 ctgcggctccactcccgggacttcttgccggaggagcaggggcggcagcggcacgccagc 2119824 Query: 343 tacagctccctggtgctggcccgcctgcgccgcgactcggcccgggccgccgcgctgtcc 402 ||||| || || |||||||| ||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 2119825 tacaggtcactcgtgctggctcgcctccgccgcgactccgcccgcgccgccgcggtgtcg 2119884 Query: 403 gcccgcgcg 411 ||||||||| Sbjct: 2119885 gcccgcgcg 2119893 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 acgcgcgccccctcctccac 219 |||||||||||||||||||| Sbjct: 4110141 acgcgcgccccctcctccac 4110122
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 107 bits (54), Expect = 3e-20 Identities = 110/129 (85%), Gaps = 6/129 (4%) Strand = Plus / Plus Query: 289 ctgcggctccactcccgggacttcctcccggaggagcaggg------gcggcacgagagc 342 |||||||||||||||||||||||| | |||||||||||||| |||||||| ||| Sbjct: 40877 ctgcggctccactcccgggacttcttgccggaggagcaggggcggcagcggcacgccagc 40936 Query: 343 tacagctccctggtgctggcccgcctgcgccgcgactcggcccgggccgccgcgctgtcc 402 ||||| || || |||||||| ||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 40937 tacaggtcactcgtgctggctcgcctccgccgcgactccgcccgcgccgccgcggtgtcg 40996 Query: 403 gcccgcgcg 411 ||||||||| Sbjct: 40997 gcccgcgcg 41005
>dbj|AK068990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170M01, full insert sequence Length = 1833 Score = 107 bits (54), Expect = 3e-20 Identities = 110/129 (85%), Gaps = 6/129 (4%) Strand = Plus / Plus Query: 289 ctgcggctccactcccgggacttcctcccggaggagcaggg------gcggcacgagagc 342 |||||||||||||||||||||||| | |||||||||||||| |||||||| ||| Sbjct: 278 ctgcggctccactcccgggacttcttgccggaggagcaggggcggcagcggcacgccagc 337 Query: 343 tacagctccctggtgctggcccgcctgcgccgcgactcggcccgggccgccgcgctgtcc 402 ||||| || || |||||||| ||||| ||||||||||| ||||| ||||||||| |||| Sbjct: 338 tacaggtcactcgtgctggctcgcctccgccgcgactccgcccgcgccgccgcggtgtcg 397 Query: 403 gcccgcgcg 411 ||||||||| Sbjct: 398 gcccgcgcg 406
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Plus Query: 289 ctgcggctccactcccgggacttcctcccggaggagcaggggcggcacgagagctacagc 348 ||||| ||| ||||||| |||||| | ||| |||||||||| | ||| | ||||| || Sbjct: 25937647 ctgcgactctactcccgagacttcttgccgaaggagcagggacaacaccatagctatagg 25937706 Query: 349 tccctggtgctggcccgcct 368 ||||| |||||||||||||| Sbjct: 25937707 tccctcgtgctggcccgcct 25937726 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 caccactccactccaaccacca 44 |||||||||||||||||||||| Sbjct: 25252858 caccactccactccaaccacca 25252837 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 cgcccgcgccgccgtctccaccgacgcg 204 ||||||||||||||||||| ||||||| Sbjct: 4217080 cgcccgcgccgccgtctccgacgacgcg 4217053
>gb|AF163841.3|AF163841 Myxococcus xanthus 4-oxalocrotonate decarboxylase-like protein, cysteine dioxygenase-like protein, putative histidine protein kinase (hpkA), putative serine/threonine protein kinase (pknD1), putative histidine protein kinase (espA), putative membrane protein (espB), putative serine/threonine protein kinase (pknD2), putative serine protease DO-like precursor (htrA), and putative response regulator genes, complete cds; and unknown genes Length = 18424 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Plus Query: 354 ggtgctggcccgcctgcgccgcga 377 |||||||||||||||||||||||| Sbjct: 18091 ggtgctggcccgcctgcgccgcga 18114
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Plus Query: 289 ctgcggctccactcccgggacttcctcccggaggagcaggggcggcacgagagctacagc 348 ||||| ||| ||||||| |||||| | ||| |||||||||| | ||| | ||||| || Sbjct: 92745 ctgcgactctactcccgagacttcttgccgaaggagcagggacaacaccatagctatagg 92804 Query: 349 tccctggtgctggcccgcct 368 ||||| |||||||||||||| Sbjct: 92805 tccctcgtgctggcccgcct 92824
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 242 ccgacgccctcgtcaaggaggag 264 ||||||||||||||||||||||| Sbjct: 238699 ccgacgccctcgtcaaggaggag 238721
>ref|XM_480940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 170 tctcccgcgcccgcgccgccgtctcc 195 |||||||||||| ||||||||||||| Sbjct: 147 tctcccgcgccctcgccgccgtctcc 172
>ref|XM_463993.1| Oryza sativa (japonica cultivar-group), mRNA Length = 903 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 181 cgcgccgccgtctccaccgacgcgcg 206 ||||||||||||||| |||||||||| Sbjct: 34 cgcgccgccgtctcccccgacgcgcg 59
>gb|BT018527.1| Zea mays clone EL01N0432H05.d mRNA sequence Length = 2043 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 243 cgacgccctcgtcaaggaggagcagc 268 ||||||||||| |||||||||||||| Sbjct: 1574 cgacgccctcgccaaggaggagcagc 1599
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 tctcccgcgcccgcgccgccgtctcc 195 |||||||||||| ||||||||||||| Sbjct: 8791340 tctcccgcgccctcgccgccgtctcc 8791315 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 ctcctcctggcctcgccggcgccggcgc 115 |||||||||||||||||| |||||||| Sbjct: 27839675 ctcctcctggcctcgccgttgccggcgc 27839648 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tctcccgcgcccgcgccgcc 189 |||||||||||||||||||| Sbjct: 26055393 tctcccgcgcccgcgccgcc 26055374
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 tctcccgcgcccgcgccgccgtctcc 195 |||||||||||| ||||||||||||| Sbjct: 69089 tctcccgcgccctcgccgccgtctcc 69064
>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0505A04 Length = 159241 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 caccactccactccaaccacca 44 |||||||||||||||||||||| Sbjct: 71466 caccactccactccaaccacca 71445
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 tctcccgcgcccgcgccgccgtctcc 195 |||||||||||| ||||||||||||| Sbjct: 134319 tctcccgcgccctcgccgccgtctcc 134294
>dbj|AK121452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142L20, full insert sequence Length = 2149 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 170 tctcccgcgcccgcgccgccgtctcc 195 |||||||||||| ||||||||||||| Sbjct: 149 tctcccgcgccctcgccgccgtctcc 174
>dbj|AK102707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104B11, full insert sequence Length = 2141 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 170 tctcccgcgcccgcgccgccgtctcc 195 |||||||||||| ||||||||||||| Sbjct: 147 tctcccgcgccctcgccgccgtctcc 172
>gb|AY108865.1| Zea mays PCO075691 mRNA sequence Length = 425 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 83 ccctgctcctcctggcctcgccggcg 108 |||||||||| ||||||||||||||| Sbjct: 102 ccctgctcctgctggcctcgccggcg 127
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 cgcccgcgccgccgtctccacc 198 |||||||||||||||||||||| Sbjct: 3129296 cgcccgcgccgccgtctccacc 3129317
>ref|NM_196490.1| Oryza sativa (japonica cultivar-group) contains similarity to glutathione reductase (NADPH) (OSJNBa0032I20.3), mRNA Length = 1665 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 161 ccgcgtccctctcccgcgcccgcgccgccgtct 193 |||| ||||||| | |||||||||||||||||| Sbjct: 320 ccgcctccctctacggcgcccgcgccgccgtct 352
>gb|AC136746.15| Mus musculus chromosome 5, clone RP23-151C5, complete sequence Length = 195530 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 acagctccctggtgctggccc 364 ||||||||||||||||||||| Sbjct: 126809 acagctccctggtgctggccc 126829
>gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0019E05, complete sequence Length = 129021 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 tggcctcgccggcgccggcgc 115 ||||||||||||||||||||| Sbjct: 4888 tggcctcgccggcgccggcgc 4908
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 381 ggcccgggccgccgcgctgtccgcc 405 |||| |||||||||||||||||||| Sbjct: 1699302 ggccggggccgccgcgctgtccgcc 1699326
>ref|XM_535652.2| PREDICTED: Canis familiaris similar to HECT domain and RCC1-like domain protein 5 (Cyclin-E binding protein 1) (LOC478474), mRNA Length = 3474 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 gccgccgcgctgtccgcccgc 408 ||||||||||||||||||||| Sbjct: 451 gccgccgcgctgtccgcccgc 471
>gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosome 8, complete sequence Length = 174928 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 72 acccctcctcgccctgctcctcctg 96 |||||||||| |||||||||||||| Sbjct: 91882 acccctcctctccctgctcctcctg 91858
>emb|AL358235.16| Human DNA sequence from clone RP11-196N24 on chromosome 10 Contains the 5' end of the gene for a novel protein (possible ortholog of mouse phosphoinositide-3-kinase adaptor protein 1 (Pik3ap1)), the ribosomal protein L13a pseudogene 5 (RPL13AP5) and a CpG island, complete sequence Length = 106506 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 102227 tcacaccactccactccaacc 102247
>emb|AL157709.17| Human DNA sequence from clone RP11-164C1 on chromosome 10 Contains the 5' end of the gene for a novel protein (KIAA0934), a novel gene, the 3' end of the gene for a novel protein (KIAA0217) and six CpG islands, complete sequence Length = 133860 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 171 ctcccgcgcccgcgccgccgtctcc 195 |||||||||||||||||||| |||| Sbjct: 2625 ctcccgcgcccgcgccgccgcctcc 2601
>emb|AL031585.2|HS227L5 Human DNA sequence from clone RP6-227L5 on chromosome Xp11.22-11.3 Contains a novel pseudogene and a pseudogene similar to part of keratin 18 (K18, CYK18) (KRT18), complete sequence Length = 85304 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 1029 tcacaccactccactccaacc 1009
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 tcctggcctcgccggcgccgg 112 ||||||||||||||||||||| Sbjct: 3355522 tcctggcctcgccggcgccgg 3355502
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 ccggcgctctgccgccaccccgcgc 133 ||||||||| ||||||||||||||| Sbjct: 182233 ccggcgctcggccgccaccccgcgc 182257
>gb|AC078828.12| Homo sapiens 3 BAC RP11-779P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 50611 tcacaccactccactccaacc 50591
>gb|AC106763.2| Homo sapiens chromosome 5 clone RP11-21C10, complete sequence Length = 165902 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 139288 tcacaccactccactccaacc 139308
>gb|AC094019.2| Homo sapiens chromosome 3 clone RP11-345J6, complete sequence Length = 198146 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 62041 tcacaccactccactccaacc 62061
>gb|AC107029.4| Homo sapiens 3 BAC RP11-550H20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182634 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 25535 tcacaccactccactccaacc 25555
>gb|AC011433.5| Homo sapiens chromosome 5 clone P1_988H11, complete sequence Length = 75454 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 8567 tcacaccactccactccaacc 8547
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 ggcctcgccggcgccggcgctctgc 120 |||||||||||||||||||| |||| Sbjct: 4953219 ggcctcgccggcgccggcgcgctgc 4953195 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 564436 ggcctcgccggcgccggcgc 564417
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 tggcctcgccggcgccggcgc 115 ||||||||||||||||||||| Sbjct: 17134852 tggcctcgccggcgccggcgc 17134872 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 1805611 ctcccgcgcccgcgccgccg 1805592
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 161 ccgcgtccctctcccgcgcccgcgccgccgtct 193 |||| ||||||| | |||||||||||||||||| Sbjct: 13995415 ccgcctccctctacggcgcccgcgccgccgtct 13995383
>gb|AC138972.8| Homo sapiens 3 BAC RP11-1005I1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137843 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 109813 tcacaccactccactccaacc 109833
>gb|AC105312.2| Homo sapiens BAC clone RP11-17C4 from 4, complete sequence Length = 127437 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 ctccactccaaccaccagccc 48 ||||||||||||||||||||| Sbjct: 120790 ctccactccaaccaccagccc 120810
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 161 ccgcgtccctctcccgcgcccgcgccgccgtct 193 |||| ||||||| | |||||||||||||||||| Sbjct: 11544 ccgcctccctctacggcgcccgcgccgccgtct 11512
>dbj|AK071051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076B14, full insert sequence Length = 828 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 tggcctcgccggcgccggcgc 115 ||||||||||||||||||||| Sbjct: 406 tggcctcgccggcgccggcgc 426
>dbj|AP002754.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-855O10, complete sequence Length = 185766 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 388 gccgccgcgctgtccgcccgcgcgtccctggcc 420 ||||||||||| || ||||||||||||||||| Sbjct: 176537 gccgccgcgcttgccccccgcgcgtccctggcc 176505
>dbj|AP002380.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-467L20, complete sequence Length = 188788 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 388 gccgccgcgctgtccgcccgcgcgtccctggcc 420 ||||||||||| || ||||||||||||||||| Sbjct: 73624 gccgccgcgcttgccccccgcgcgtccctggcc 73592
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 161 ccgcgtccctctcccgcgcccgcgccgccgtct 193 |||| ||||||| | |||||||||||||||||| Sbjct: 14003657 ccgcctccctctacggcgcccgcgccgccgtct 14003625
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 tggcctcgccggcgccggcgc 115 ||||||||||||||||||||| Sbjct: 17230038 tggcctcgccggcgccggcgc 17230058 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 1803332 ctcccgcgcccgcgccgccg 1803313
>gb|AC004770.1|AC004770 Homo sapiens chromosome 11, BAC CIT-HSP-311e8 (BC269730) containing the hFEN1 gene, complete sequence Length = 185035 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 388 gccgccgcgctgtccgcccgcgcgtccctggcc 420 ||||||||||| || ||||||||||||||||| Sbjct: 127694 gccgccgcgcttgccccccgcgcgtccctggcc 127726
>emb|AL357094.4|CNS05TDT Human chromosome 14 DNA sequence BAC R-14N4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158151 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tcacaccactccactccaacc 40 ||||||||||||||||||||| Sbjct: 100433 tcacaccactccactccaacc 100453
>emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chromosome 4, complete sequence Length = 219634 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 ctcgccctgctcctcctggcc 99 ||||||||||||||||||||| Sbjct: 116358 ctcgccctgctcctcctggcc 116338
>ref|NM_101696.1| Arabidopsis thaliana unknown protein AT1G18380 mRNA, complete cds Length = 753 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ccaacaccgagacgctcgatgtat 160 |||||||||||||| ||||||||| Sbjct: 377 ccaacaccgagacgatcgatgtat 400
>gb|AY800585.1| Arabidopsis thaliana clone H0000001106 hypothetical protein (AT1G18380) mRNA, complete cds Length = 1090 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ccaacaccgagacgctcgatgtat 160 |||||||||||||| ||||||||| Sbjct: 611 ccaacaccgagacgatcgatgtat 634
>ref|NM_189533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1314 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 acgcgcgccccctcctccac 219 |||||||||||||||||||| Sbjct: 863 acgcgcgccccctcctccac 882
>ref|XM_493899.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 525 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 76 ggcctcgccggcgccggcgc 95
>gb|AC109196.12| Mus musculus chromosome 5, clone RP23-313F5, complete sequence Length = 205369 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 gccgccgcgctgtccgcccgcgcg 411 ||||||||||| |||||||||||| Sbjct: 156982 gccgccgcgctctccgcccgcgcg 156959
>ref|XM_483738.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1775 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 ctcctcctggcctcgccggcgccggcgc 115 |||||||||||||||||| |||||||| Sbjct: 1121 ctcctcctggcctcgccgttgccggcgc 1094
>ref|XM_483737.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2606 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 ctcctcctggcctcgccggcgccggcgc 115 |||||||||||||||||| |||||||| Sbjct: 1890 ctcctcctggcctcgccgttgccggcgc 1863
>ref|XM_483410.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3729 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tctcccgcgcccgcgccgcc 189 |||||||||||||||||||| Sbjct: 171 tctcccgcgcccgcgccgcc 152
>ref|XM_470983.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1848 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ccgcgcccgcgccgccgtctccac 197 ||||||||||||||||| |||||| Sbjct: 1728 ccgcgcccgcgccgccgcctccac 1705
>ref|NM_185009.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1848 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctctcccgcgcccgcgccgc 188 |||||||||||||||||||| Sbjct: 205 ctctcccgcgcccgcgccgc 224
>ref|XM_478265.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 640 ggcctcgccggcgccggcgc 659
>ref|NM_009793.1| Mus musculus calcium/calmodulin-dependent protein kinase IV (Camk4), mRNA Length = 3165 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 73 ccctcctcgccctgctcctc 92
>gb|BC070420.1| Mus musculus calcium/calmodulin-dependent protein kinase IV, mRNA (cDNA clone MGC:95670 IMAGE:5718423), complete cds Length = 1805 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 264 ccctcctcgccctgctcctc 283
>gb|AF427387.1| Uncultured organism clone F85OC.12KL putative xylanase gene, partial cds Length = 288 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gctcgatgtatccgcgtccc 169 |||||||||||||||||||| Sbjct: 226 gctcgatgtatccgcgtccc 207
>gb|AF427390.1| Uncultured organism clone F85OC.16KL putative xylanase gene, partial cds Length = 288 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gctcgatgtatccgcgtccc 169 |||||||||||||||||||| Sbjct: 226 gctcgatgtatccgcgtccc 207
>gb|AF427395.1| Uncultured organism clone F85OC.8KL putative xylanase gene, partial cds Length = 288 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gctcgatgtatccgcgtccc 169 |||||||||||||||||||| Sbjct: 63 gctcgatgtatccgcgtccc 82
>gb|AF427403.1| Uncultured organism clone F86MC.3KL putative xylanase gene, partial cds Length = 288 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gctcgatgtatccgcgtccc 169 |||||||||||||||||||| Sbjct: 63 gctcgatgtatccgcgtccc 82
>gb|AF427417.1| Uncultured organism clone F90MC.1KL putative xylanase gene, partial cds Length = 288 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gctcgatgtatccgcgtccc 169 |||||||||||||||||||| Sbjct: 226 gctcgatgtatccgcgtccc 207
>gb|AF427421.1| Uncultured organism clone F90MC.5KL putative xylanase gene, partial cds Length = 288 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gctcgatgtatccgcgtccc 169 |||||||||||||||||||| Sbjct: 63 gctcgatgtatccgcgtccc 82
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 23441 ctcccgcgcccgcgccgccg 23422
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ctctcccgcgcccgcgccgc 188 |||||||||||||||||||| Sbjct: 32139851 ctctcccgcgcccgcgccgc 32139832 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cccgcgcccgcgccgccgtctcca 196 |||||||||||||||||| ||||| Sbjct: 12320775 cccgcgcccgcgccgccgcctcca 12320798 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cctggcctcgccggcgccgg 112 |||||||||||||||||||| Sbjct: 9347680 cctggcctcgccggcgccgg 9347699
>gb|AC103703.5| Homo sapiens chromosome 17, clone RP11-764D10, complete sequence Length = 144240 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cttcacaccactccactcca 37 |||||||||||||||||||| Sbjct: 1717 cttcacaccactccactcca 1736
>gb|AC091152.18| Homo sapiens chromosome 17, clone RP11-1072C15, complete sequence Length = 181835 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cttcacaccactccactcca 37 |||||||||||||||||||| Sbjct: 39469 cttcacaccactccactcca 39450
>emb|Z85996.1|HS431A14 Human DNA sequence from clone RP3-431A14 on chromosome 6p21 Contains the CDKN1A gene for cyclin-dependent kinase inhibitor 1A, the gene for a novel protein similar to ras family protein, the gene for a novel copine-like protein (KIA1599), a galanin receptor pseudogene, the 3' end of the PPIL1 gene for peptidylprolyl isomerase protein and 2 CpG islands, complete sequence Length = 195364 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 ccctcctccaccagtccctcgcct 232 ||||||||| |||||||||||||| Sbjct: 3001 ccctcctcccccagtccctcgcct 2978
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cctggtgctggcccgcctgc 370 |||||||||||||||||||| Sbjct: 4149860 cctggtgctggcccgcctgc 4149841
>gb|AY090931.1| Arabidopsis thaliana unknown protein (At1g18380) mRNA, partial cds Length = 985 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ccaacaccgagacgctcgatgtat 160 |||||||||||||| ||||||||| Sbjct: 614 ccaacaccgagacgatcgatgtat 637
>emb|X58995.1|MMCDPK4 Mouse mRNA for calmodulin-dependent protein kinase IV Length = 3165 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 73 ccctcctcgccctgctcctc 92
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 ggcgccggcgctctgccgccaccc 128 ||||||||||||| |||||||||| Sbjct: 32854 ggcgccggcgctcggccgccaccc 32877
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ggcgccggcgctctgccgccaccc 128 ||||||||||||| |||||||||| Sbjct: 202469 ggcgccggcgctcggccgccaccc 202446
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ggcgccggcgctctgccgccaccc 128 ||||||||||||| |||||||||| Sbjct: 228203 ggcgccggcgctcggccgccaccc 228180
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 cgactcggcccgggccgccg 394 |||||||||||||||||||| Sbjct: 160061 cgactcggcccgggccgccg 160080
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 cgccgccgtctccaccgacgcgcg 206 ||||||||||||| |||||||||| Sbjct: 104976 cgccgccgtctccgccgacgcgcg 104953
>emb|AJ457979.1|TAE457979 Triticum aestivum partial mRNA for ferredoxin-NADP(H) oxidoreductase (fnr gene), clone 1 Length = 1062 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 ccgccgtctccaccgacgcg 204 |||||||||||||||||||| Sbjct: 938 ccgccgtctccaccgacgcg 919
>emb|CR936713.1| Homo sapiens mRNA; cDNA DKFZp781K09163 (from clone DKFZp781K09163) Length = 2270 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 ttcacaccactccactccaaccac 42 ||||||||||| |||||||||||| Sbjct: 156 ttcacaccactgcactccaaccac 133
>emb|AL589699.4| Mouse DNA sequence from clone RP23-92G13 on chromosome 13 Contains the 3' end of the gene for a novel protein similar to KIAA0386, five novel genes, the Gmnn gene for geminin, gene PNAS-27, the Ttrap gene for Traf and Tnf receptor associated protein, the gene for a novel protein similar to KIAA0319, the gene for the ortholog of human and rat aldehyde dehydrogenase 5A1 (succinate-semialdehyde dehydrogenase) (ALDH5A1) (SSADH), the 5' end of the Gpld1 gene for glycosylphosphatidylinositol specific phospholipase D1 and four CpG islands, complete sequence Length = 256608 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ctacagctccctggtgctgg 361 |||||||||||||||||||| Sbjct: 223302 ctacagctccctggtgctgg 223283
>gb|AE012375.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 283 of 460 of the complete genome Length = 11056 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 gctccggcggcaagctcgcgctgc 292 |||||| ||||||||||||||||| Sbjct: 2292 gctccgccggcaagctcgcgctgc 2315
>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence Length = 186783 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 cacaccactccactccaacc 40 |||||||||||||||||||| Sbjct: 103424 cacaccactccactccaacc 103443
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ctggcccgcctgcgccgcga 377 |||||||||||||||||||| Sbjct: 3102753 ctggcccgcctgcgccgcga 3102772
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ctctcccgcgcccgcgccgc 188 |||||||||||||||||||| Sbjct: 140976 ctctcccgcgcccgcgccgc 140957
>gb|AF497972.1| Homo sapiens cyclin-dependent kinase inhibitor 1A (p21, Cip1) (CDKN1A) gene, complete cds Length = 10907 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 ccctcctccaccagtccctcgcct 232 ||||||||| |||||||||||||| Sbjct: 1132 ccctcctcccccagtccctcgcct 1109
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cctggcctcgccggcgccgg 112 |||||||||||||||||||| Sbjct: 45080 cctggcctcgccggcgccgg 45099
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 cgccgccgtctccaccgacgcgcg 206 |||||||| ||||||||||||||| Sbjct: 4121034 cgccgccgcctccaccgacgcgcg 4121057
>gb|AF331656.1|AF331656 Leptomonas collosoma C/D box small nucleolar RNA cluster, complete sequence Length = 1130 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ggagcagcgctccggcggca 280 |||||||||||||||||||| Sbjct: 1010 ggagcagcgctccggcggca 991
>gb|S65840.1| Ca2+/calmodulin-dependent protein kinase IV beta polypeptide [rats, cerebellum, mRNA, 1706 nt] Length = 1706 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 181 ccctcctcgccctgctcctc 200
>dbj|AK043114.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730057B21 product:calcium/calmodulin-dependent protein kinase IV, full insert sequence Length = 2544 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 93 ccctcctcgccctgctcctc 112
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 gctccggcggcaagctcgcgctgc 292 |||||| ||||||||||||||||| Sbjct: 1792121 gctccgccggcaagctcgcgctgc 1792098
>dbj|AK030219.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933424O07 product:calcium/calmodulin-dependent protein kinase IV, full insert sequence Length = 2295 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 267 ccctcctcgccctgctcctc 286
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cgccgtctccaccgacgcgc 205 |||||||||||||||||||| Sbjct: 1574843 cgccgtctccaccgacgcgc 1574824
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccgcgcccgcgccgccgtctccac 197 ||||||||||||||||| |||||| Sbjct: 401328 ccgcgcccgcgccgccgcctccac 401351
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cccgcgcccgcgccgccgtc 192 |||||||||||||||||||| Sbjct: 26647452 cccgcgcccgcgccgccgtc 26647471 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 17709502 ggcctcgccggcgccggcgc 17709521 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgacaccgacgccctcgtc 255 |||||||||||||||||||| Sbjct: 8072923 ccgacaccgacgccctcgtc 8072904 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 1745366 ctcccgcgcccgcgccgccg 1745347
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 18904515 ggcctcgccggcgccggcgc 18904496
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 950387 ggcctcgccggcgccggcgc 950406
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ctctcccgcgcccgcgccgc 188 |||||||||||||||||||| Sbjct: 32230363 ctctcccgcgcccgcgccgc 32230344 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cccgcgcccgcgccgccgtctcca 196 |||||||||||||||||| ||||| Sbjct: 12317538 cccgcgcccgcgccgccgcctcca 12317561 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cctggcctcgccggcgccgg 112 |||||||||||||||||||| Sbjct: 9345801 cctggcctcgccggcgccgg 9345820
>gb|AF241171.1|AF241171 Pseudomonas aeruginosa pathogenicity island PAGI-1 gene, complete sequence Length = 51300 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tcgccggcgccggcgctctg 119 |||||||||||||||||||| Sbjct: 17511 tcgccggcgccggcgctctg 17492
>dbj|AB086144.2| Oryctolagus cuniculus pvr gene for poliovirus receptor, complete cds Length = 6160 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 cctcctggcctcgccggcgccggc 113 |||||| ||||||||||||||||| Sbjct: 38 cctcctcgcctcgccggcgccggc 15
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 acgcgcgccccctcctccac 219 |||||||||||||||||||| Sbjct: 76884 acgcgcgccccctcctccac 76865
>gb|AC013354.6|AC013354 Genomic sequence for Arabidopsis thaliana BAC F15H18 from chromosome I, complete sequence Length = 95327 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 ccaacaccgagacgctcgatgtat 160 |||||||||||||| ||||||||| Sbjct: 50372 ccaacaccgagacgatcgatgtat 50349
>gb|AC006452.5| Homo sapiens PAC clone RP4-592P3 from 7, complete sequence Length = 121705 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cgacgcgcgccccctcctcc 217 |||||||||||||||||||| Sbjct: 79085 cgacgcgcgccccctcctcc 79104
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cccgcgcccgcgccgccgtctcca 196 |||||||||||||||||| ||||| Sbjct: 90308 cccgcgcccgcgccgccgcctcca 90331
>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence Length = 134014 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cctggcctcgccggcgccgg 112 |||||||||||||||||||| Sbjct: 8285 cctggcctcgccggcgccgg 8266
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 cgcccgcgccgccgtctccaccgacgcg 204 ||||||||||||||||||| ||||||| Sbjct: 62301 cgcccgcgccgccgtctccgacgacgcg 62274
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 gccggcgccggcgctctgcc 121 |||||||||||||||||||| Sbjct: 54732 gccggcgccggcgctctgcc 54713
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 acgcgcgccccctcctccac 219 |||||||||||||||||||| Sbjct: 57112 acgcgcgccccctcctccac 57093
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 ctcggcccgggccgccgcgc 397 |||||||||||||||||||| Sbjct: 2225966 ctcggcccgggccgccgcgc 2225985
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 6500 ggcctcgccggcgccggcgc 6481
>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1150_A11 Length = 142010 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 ctcctcctggcctcgccggcgccggcgc 115 |||||||||||||||||| |||||||| Sbjct: 47753 ctcctcctggcctcgccgttgccggcgc 47726
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tctcccgcgcccgcgccgcc 189 |||||||||||||||||||| Sbjct: 90954 tctcccgcgcccgcgccgcc 90935
>dbj|AK120682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163C05, full insert sequence Length = 1623 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 736 ggcctcgccggcgccggcgc 755
>dbj|AK120587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145A09, full insert sequence Length = 1618 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 cccgcgcccgcgccgccgtctcca 196 |||||||||||||||||| ||||| Sbjct: 83 cccgcgcccgcgccgccgcctcca 106
>gb|AY924673.1| Arabidopsis thaliana hypothetical protein (At1g18380) gene, complete cds Length = 753 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ccaacaccgagacgctcgatgtat 160 |||||||||||||| ||||||||| Sbjct: 377 ccaacaccgagacgatcgatgtat 400
>dbj|AK110829.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H12, full insert sequence Length = 1499 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 137 ggcctcgccggcgccggcgc 156
>dbj|AK099715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013085B05, full insert sequence Length = 2606 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 ctcctcctggcctcgccggcgccggcgc 115 |||||||||||||||||| |||||||| Sbjct: 1890 ctcctcctggcctcgccgttgccggcgc 1863
>dbj|AK106793.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A11, full insert sequence Length = 1775 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 ctcctcctggcctcgccggcgccggcgc 115 |||||||||||||||||| |||||||| Sbjct: 1121 ctcctcctggcctcgccgttgccggcgc 1094
>dbj|AK101030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150J02, full insert sequence Length = 1467 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 47 ctcccgcgcccgcgccgccg 66
>dbj|AK100236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052D01, full insert sequence Length = 3730 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tctcccgcgcccgcgccgcc 189 |||||||||||||||||||| Sbjct: 171 tctcccgcgcccgcgccgcc 152
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cctggtgctggcccgcctgc 370 |||||||||||||||||||| Sbjct: 506040 cctggtgctggcccgcctgc 506059
>dbj|AK066437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067M23, full insert sequence Length = 1304 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cctggcctcgccggcgccgg 112 |||||||||||||||||||| Sbjct: 65 cctggcctcgccggcgccgg 46
>dbj|AK061124.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G09, full insert sequence Length = 1278 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 1088 ctcccgcgcccgcgccgccg 1069
>gb|AY106781.1| Zea mays PCO120457 mRNA sequence Length = 722 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 cctcctcgccctgctcctcctggc 98 |||||||||||| ||||||||||| Sbjct: 173 cctcctcgccctcctcctcctggc 196
>emb|X91964.1|RNCADPKIV R.norvegicus alpha and beta isoforms of calmodulin-dependent protein kinase IV gene Length = 1280 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 1124 ccctcctcgccctgctcctc 1143
>ref|NM_012727.2| Rattus norvegicus calcium/calmodulin-dependent protein kinase IV (Camk4), mRNA Length = 2272 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 150 ccctcctcgccctgctcctc 169
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cctggtgctggcccgcctgc 370 |||||||||||||||||||| Sbjct: 1941211 cctggtgctggcccgcctgc 1941192
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 40784 ggcctcgccggcgccggcgc 40803
>gb|U24170.1|HSU24170 Human p21 (WAF1) gene, partial promoter sequence Length = 5143 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 ccctcctccaccagtccctcgcct 232 ||||||||| |||||||||||||| Sbjct: 4360 ccctcctcccccagtccctcgcct 4337
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cccgcgcccgcgccgccgtc 192 |||||||||||||||||||| Sbjct: 26575621 cccgcgcccgcgccgccgtc 26575640 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 17663873 ggcctcgccggcgccggcgc 17663892 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ccgacaccgacgccctcgtc 255 |||||||||||||||||||| Sbjct: 8072804 ccgacaccgacgccctcgtc 8072785 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 1745343 ctcccgcgcccgcgccgccg 1745324
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccgcgcccgcgccgccgtctccac 197 ||||||||||||||||| |||||| Sbjct: 85987 ccgcgcccgcgccgccgcctccac 86010
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113494 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcctcgccggcgccggcgc 115 |||||||||||||||||||| Sbjct: 71851 ggcctcgccggcgccggcgc 71832
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccgcgcccgcgccgccgtctccac 197 ||||||||||||||||| |||||| Sbjct: 40080 ccgcgcccgcgccgccgcctccac 40103
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151117 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 ccgacaccgacgccctcgtc 255 |||||||||||||||||||| Sbjct: 70755 ccgacaccgacgccctcgtc 70774
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 95117 ctcccgcgcccgcgccgccg 95136
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ctcccgcgcccgcgccgccg 190 |||||||||||||||||||| Sbjct: 21555 ctcccgcgcccgcgccgccg 21574
>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101173 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cccgcgcccgcgccgccgtc 192 |||||||||||||||||||| Sbjct: 66322 cccgcgcccgcgccgccgtc 66341
>gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, complete sequence Length = 193004 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 185272 ccctcctcgccctgctcctc 185291
>gb|M20568.1|AVINIFC A.vinelandii major nif gene cluster encoding nitrogen fixation complex, complete cds Length = 28795 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 cggcccgggccgccgcgctg 399 |||||||||||||||||||| Sbjct: 10234 cggcccgggccgccgcgctg 10253
>gb|M63334.1|RATCAMGRD R.norvegicus calmodulin-dependent protein kinase(CaM kinase-GR) mRNA, complete cds Length = 2299 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 150 ccctcctcgccctgctcctc 169
>gb|M64757.1|RATCALM Rat Ca++/calmodulin protein kinase and calmodulin-binding protein mRNA, complete cds Length = 1785 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 246 ccctcctcgccctgctcctc 265
>gb|M15815.1|AVINIFN Azotobacter vinelandii nitrogen fixation (nifN) gene, complete cds Length = 1647 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 cggcccgggccgccgcgctg 399 |||||||||||||||||||| Sbjct: 1202 cggcccgggccgccgcgctg 1221
>gb|L16999.1|RATCCDPK Rattus norvegicus alcium/calmodulin-dependent protein gene, 5' end Length = 3001 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccctcctcgccctgctcctc 93 |||||||||||||||||||| Sbjct: 2919 ccctcctcgccctgctcctc 2938 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,530,339 Number of Sequences: 3902068 Number of extensions: 3530339 Number of successful extensions: 111451 Number of sequences better than 10.0: 148 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105605 Number of HSP's gapped (non-prelim): 5846 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
