>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5|
          Length = 355

 Score = 65.1 bits (157), Expect = 7e-11
 Identities = 37/97 (38%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = +1

Query: 121 WGVXXXXXXXXXXSPAAVHCRTCXXXXXXXXXAYLCAGCDAG-HARAGHERVWVCEVCKL 297
           WG             AAV CR           A+LC  CD   H+   HERVWVCEVC+ 
Sbjct: 15  WGAAARSCDACKSVTAAVFCRV--------DSAFLCIACDTRIHSFTRHERVWVCEVCEQ 66

Query: 298 XXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPV 408
                                IH ANPLA RHERVPV
Sbjct: 67  APAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103

>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4|
          Length = 362

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 35/92 (38%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = +1

Query: 166 AAVHCRTCXXXXXXXXXAYLCAGCD-----AGHARAGHERVWVCEVCKLXXXXXXXXXXX 330
           AA++CR           A+LC  CD     A    + H RVW+CEVC+            
Sbjct: 14  AALYCRP--------DAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 65

Query: 331 XXXXXXXXXXIHHANPLARRHERVPVLPIGSS 426
                     IH ANPLARRHERVPV P   S
Sbjct: 66  AALCVTCDRDIHSANPLARRHERVPVTPFYDS 97

>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1|
          Length = 355

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 36/93 (38%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
 Frame = +1

Query: 178 CRTCXXXXXX----XXXAYLCAGCDAG-HAR----AGHERVWVCEVCKLXXXXXXXXXXX 330
           C TC             AYLC+ CDA  HA     + HERV VC+ C+            
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 331 XXXXXXXXXXIHHANPLARRHERVPVLPIGSSS 429
                     IH ANPLARRH+RVP+LPI   S
Sbjct: 72  ASLCTTCDSEIHSANPLARRHQRVPILPISEYS 104

>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2|
          Length = 347

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
 Frame = +1

Query: 178 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCKLXXXXXXXXXXX 330
           C TC             AYLC  CDA         + HERV VC+ C+            
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75

Query: 331 XXXXXXXXXXIHHANPLARRHERVPVLPIGSSS 429
                     IH ANPLARRH+RVP+LP+ ++S
Sbjct: 76  ASLCTACDAEIHSANPLARRHQRVPILPLSANS 108

>CONS_ARATH (Q39057) Zinc finger protein CONSTANS|
          Length = 373

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +1

Query: 178 CRTCXXXXXX----XXXAYLCAGCDA-----GHARAGHERVWVCEVCKLXXXXXXXXXXX 330
           C TC             AYLC  CDA         + H+RV VCE C+            
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79

Query: 331 XXXXXXXXXXIHHANPLARRHERVPVLPIGSSS 429
                     +H ANPLARRH+RVP+LPI  +S
Sbjct: 80  ASLCTACDSEVHSANPLARRHQRVPILPISGNS 112

>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3|
          Length = 294

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +1

Query: 217 AYLCAGCD-----AGHARAGHERVWVCEVCKLXXXXXXXXXXXXXXXXXXXXXIHHANPL 381
           A+LC  CD     A    + HERVW+CEVC+                      IH ANPL
Sbjct: 25  AFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPL 84

Query: 382 ARRHERVPVLP 414
           +RRHERVP+ P
Sbjct: 85  SRRHERVPITP 95



 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +1

Query: 277 VCEVCKLXXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPVLPIGSSSP 432
           +C+ CK                      IH AN LA RHERV +  +   +P
Sbjct: 7   LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAP 58

>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16|
          Length = 417

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 361 IHHANPLARRHERV 402
           +H ANPLARRHERV
Sbjct: 44  VHSANPLARRHERV 57

>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6|
          Length = 406

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 361 IHHANPLARRHERV 402
           +H ANPLARRHERV
Sbjct: 44  VHSANPLARRHERV 57

>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600|
          Length = 299

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +1

Query: 280 CEVCKLXXXXXXXXXXXXXXXXXXXXXIHHANPLARRHERVPVLPIGSSSPE 435
           C VC+                      IH AN LA +H+RVP+    SS P+
Sbjct: 5   CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPK 56

>NEB2_HUMAN (Q96SB3) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein|
           phosphatase 1 regulatory subunit 9B)
          Length = 815

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 248 CPASH--PAHRYAPSPPPLRPSHVRQ 177
           CPA    P HR AP+ PP +P  VR+
Sbjct: 270 CPAGQQPPQHRVAPARPPPKPREVRK 295

>VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin (Protease) (EC|
           3.4.21.97); Capsid assembly protein]
          Length = 621

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 260 PARACPASHPAHRYAPSPPPLRPSH 186
           P    PA  P H ++P PP   PSH
Sbjct: 463 PGEGAPAELPPHHHSPPPPHPPPSH 487

>ESR2_CALJA (Q95171) Estrogen receptor beta (ER-beta)|
          Length = 530

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 175 HCRTCXXXXXXXXXAYLCAGCDAGHARAGHERVWVCEVCK 294
           HC +          A+ CA C + +A   H  VW CE CK
Sbjct: 132 HCASPVTGPSSKRDAHFCAVC-SDYASGYHYGVWSCEGCK 170

>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 2300

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -2

Query: 254 RACPASHPAHRYAPSPP-----PLRPSHVRQCTAAG 162
           RA  +++PA  Y   P      P+RP +VRQ TA G
Sbjct: 593 RAAESTYPASVYVSDPSEQREVPVRPGYVRQTTAPG 628

>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 819

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -2

Query: 278 THTLSCPARACPASHPAHRYAPSPPP 201
           TH  S P    PASHPAH   PS PP
Sbjct: 386 THPASQPP--LPASHPAHPPVPSLPP 409

>RNC_HUMAN (Q9NRR4) Ribonuclease III (EC 3.1.26.3) (RNase III) (Drosha) (p241)|
          Length = 1374

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 260 PARACPASHPAHRYAPSPPPLRPSHVR 180
           P R CP     H   PS P  RP ++R
Sbjct: 14  PGRGCPRGRGGHGARPSAPSFRPQNLR 40

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -2

Query: 287 TSQTHTLSCPARACPASHPAHRYAPSPPPLR 195
           TS   T SCP  A     P  R  PSPP LR
Sbjct: 114 TSARSTSSCPRAAPTCPCPLSRRVPSPPYLR 144

>MYF5_COTJA (P34061) Myogenic factor 5 (Myf-5) (Myogenic factor 3) (Fragment)|
          Length = 246

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 241 AGHARAGHERVWVCEVCK 294
           +GH +AGH  +W C+ CK
Sbjct: 49  SGHHQAGHCLMWACKACK 66

>MYF5_CHICK (Q08856) Myogenic factor 5 (Myf-5)|
          Length = 258

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 241 AGHARAGHERVWVCEVCK 294
           +GH +AGH  +W C+ CK
Sbjct: 61  SGHHQAGHCLMWACKACK 78

>MYF5_NOTVI (Q91154) Myogenic factor 5 (Myf-5)|
          Length = 256

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 241 AGHARAGHERVWVCEVCK 294
           +GH +AGH  +W C+ CK
Sbjct: 59  SGHHQAGHCLLWACKACK 76

>UCP8_SCHPO (O94685) UBA domain-containing protein 8|
          Length = 884

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 260 PARACPASHPAHRYAPSPPPLRPS 189
           PA   PA  PA ++ P PPP+R S
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSS 752

>MYF5_MOUSE (P24699) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 244 GHARAGHERVWVCEVCK 294
           GH +AGH  +W C+ CK
Sbjct: 60  GHHQAGHCLMWACKACK 76

>MYF5_HUMAN (P13349) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 244 GHARAGHERVWVCEVCK 294
           GH +AGH  +W C+ CK
Sbjct: 60  GHHQAGHCLMWACKACK 76

>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 244 GHARAGHERVWVCEVCK 294
           GH +AGH  +W C+ CK
Sbjct: 60  GHHQAGHCLMWACKACK 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,069,328
Number of Sequences: 219361
Number of extensions: 461337
Number of successful extensions: 2330
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2308
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)