ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 70 2e-12
2APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 67 2e-11
3EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 37 0.018
46PGD_LACLC (P96789) 6-phosphogluconate dehydrogenase, decarboxyl... 30 2.8
5RDRP_REOVL (P07940) RNA-directed RNA polymerase (EC 2.7.7.48) (S... 29 6.3
66PGD_LACLA (Q9CHU6) 6-phosphogluconate dehydrogenase, decarboxyl... 29 6.3
7DSG1B_MOUSE (Q7TSF1) Desmoglein-1 beta precursor (Dsg1-beta) (De... 28 8.2
8DSG1A_MOUSE (Q61495) Desmoglein-1 alpha precursor (Dsg1-alpha) (... 28 8.2
9CTGE2_HUMAN (Q96RT6) Protein cTAGE-2 28 8.2

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 32/70 (45%), Positives = 49/70 (70%)
 Frame = +1

Query: 244 VTALIVFGDSIVDPGNNNNLPSTRMKANHAPYGKDFAGHVATGRFSNALLPPDLIAQRLN 423
           + A+  FGDS+ D GNNNNL  T++K+N+ PYG DF   VATGRFSN ++  D +A+ + 
Sbjct: 202 IPAVFFFGDSVFDTGNNNNL-ETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMG 260

Query: 424 LKPLLGPWLN 453
           +K ++  +L+
Sbjct: 261 VKEIVPAYLD 270



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 33/70 (47%), Positives = 47/70 (67%)
 Frame = +1

Query: 244 VTALIVFGDSIVDPGNNNNLPSTRMKANHAPYGKDFAGHVATGRFSNALLPPDLIAQRLN 423
           + A+  FGDSI D GNNNNL  T++K N+ PYG DF   VATGRFSN  +  D I++ L 
Sbjct: 123 IPAVFFFGDSIFDTGNNNNL-DTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLG 181

Query: 424 LKPLLGPWLN 453
           +K ++  +++
Sbjct: 182 VKEIVPAYVD 191



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 26/68 (38%), Positives = 36/68 (52%)
 Frame = +1

Query: 250 ALIVFGDSIVDPGNNNNLPSTRMKANHAPYGKDFAGHVATGRFSNALLPPDLIAQRLNLK 429
           A+  FGDS  D G      +      + PYG+ F  H +TGR+S+  L  D IA+  NL 
Sbjct: 34  AIFNFGDSNSDTGGK----AAAFYPLNPPYGETFF-HRSTGRYSDGRLIIDFIAESFNL- 87

Query: 430 PLLGPWLN 453
           P L P+L+
Sbjct: 88  PYLSPYLS 95



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>6PGD_LACLC (P96789) 6-phosphogluconate dehydrogenase, decarboxylating (EC|
           1.1.1.44)
          Length = 472

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 253 LIVFGDSIVDPGNNNNLPSTRMKANHAPYGKDFAGHVATGRFSNALLPPDLI 408
           L+  GD ++D GN +   + R  A  A  G +F G   +G    ALL P ++
Sbjct: 90  LLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMM 141



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>RDRP_REOVL (P07940) RNA-directed RNA polymerase (EC 2.7.7.48) (Sigma NS|
           protein) (Core protein) (RNA-binding protein)
          Length = 366

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 407 MRSGGRSALENRPVATWPAKSLP*GAWLAFILVDGRLLLLP 285
           MR   RSAL++  V +  + SL  G W+A    D RLL+ P
Sbjct: 323 MRLWTRSALDDSVVTSSLSISLDRGRWVAADATDARLLVFP 363



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>6PGD_LACLA (Q9CHU6) 6-phosphogluconate dehydrogenase, decarboxylating (EC|
           1.1.1.44)
          Length = 472

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 265 GDSIVDPGNNNNLPSTRMKANHAPYGKDFAGHVATGRFSNALLPPDLI 408
           GD ++D GN +   + R  A  A  G +F G   +G    ALL P ++
Sbjct: 94  GDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMM 141



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>DSG1B_MOUSE (Q7TSF1) Desmoglein-1 beta precursor (Dsg1-beta) (Desmoglein-5)|
          Length = 1060

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 244 VTALIVFGDSIVDPGNNNNLPSTRMKANHAPYGKDFAGHVATGRFS 381
           VT L V   S+  PG+   +  +RM+ANH   G+  A  + TGR S
Sbjct: 374 VTVLNVIEGSVFRPGSKTFVVDSRMEANHR-VGEFVATDLDTGRAS 418



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>DSG1A_MOUSE (Q61495) Desmoglein-1 alpha precursor (Dsg1-alpha) (Desmoglein-1)|
           (Desmosomal glycoprotein I) (DG1) (DGI)
          Length = 1057

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 244 VTALIVFGDSIVDPGNNNNLPSTRMKANHAPYGKDFAGHVATGRFS 381
           VT L V   S+  PG+   +  +RM+ANH   G+  A  + TGR S
Sbjct: 374 VTVLNVIEGSVFRPGSKTFVVDSRMEANHR-VGEFVATDLDTGRAS 418



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>CTGE2_HUMAN (Q96RT6) Protein cTAGE-2|
          Length = 754

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 298 NLPSTRMKANHAPYGKDFAGHVATGRFSNALLPPDLIAQRLNLKPLL 438
           ++P+T     H+PYG    G  ++   ++ L PP L+   L L PLL
Sbjct: 475 DVPNTAFGRQHSPYGPSPLGWPSSETRAS-LYPPTLLEGPLRLSPLL 520


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,949,091
Number of Sequences: 219361
Number of extensions: 582476
Number of successful extensions: 1865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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