ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY904340.1| Hordeum vulgare subsp. vulgare 2-alkenal reductas... 82 2e-12
2ref|XM_473036.1| Oryza sativa (japonica cultivar-group), predic... 70 6e-09
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
4dbj|AK109382.2| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
5dbj|AK069136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
6emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 70 6e-09
7ref|NM_190224.1| Oryza sativa (japonica cultivar-group), predic... 64 4e-07
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
9dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
10dbj|AK099151.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
11dbj|AK063674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
14emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb... 52 0.001
15gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 44 0.36
16ref|NM_184568.1| Oryza sativa (japonica cultivar-group), predic... 44 0.36
17emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.36
18emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 44 0.36
19emb|BX640414.1| Bordetella pertussis strain Tohama I, complete g... 44 0.36
20gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.36
21gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.36
22emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 42 1.4
23emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 42 1.4
24emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 42 1.4
25emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 1.4
26ref|XM_465723.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
27gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.6
28gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.6
29emb|X60350.1|MTGROEOP M.tuberculosis groE gene for KCS and 10-kD... 40 5.6
30emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 5.6
31emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 40 5.6
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.6
33gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 5.6
34gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 40 5.6
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
36dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.6
37dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
38dbj|AP005322.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
39gb|AE005081.1| Halobacterium sp. NRC-1 section 112 of 170 of the... 40 5.6
40dbj|AK111178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
41dbj|AK070393.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
42emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.6
43gb|AC152181.1| Mus musculus BAC clone RP24-321P19 from 15, compl... 40 5.6
44gb|L43074.1|STMFABD Streptomyces glaucescens fabD, fabH, fabC, f... 40 5.6 
>gb|AY904340.1| Hordeum vulgare subsp. vulgare 2-alkenal reductase (ALH) gene,
           complete cds
          Length = 1864

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 206 tggtcaagaacctctacctctcctgcgacccctacatgcgc 246
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tggtcaagaacctctacctctcctgcgacccctacatgcgc 180
to top
>ref|XM_473036.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1038

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 361 gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 415
           |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 286 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 340



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 211 aagaacctctacctctcctgcgacccctacatgcgc 246
           |||||||| ||||| |||||||||||||||||||||
Sbjct: 139 aagaacctgtacctgtcctgcgacccctacatgcgc 174
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 361      gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 415
                |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 24834370 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 24834316



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 211      aagaacctctacctctcctgcgacccctacatgcgc 246
                |||||||| ||||| |||||||||||||||||||||
Sbjct: 24834649 aagaacctgtacctgtcctgcgacccctacatgcgc 24834614
to top
>dbj|AK109382.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F02, full
           insert sequence
          Length = 1343

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 361 gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 415
           |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 394 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 448



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 211 aagaacctctacctctcctgcgacccctacatgcgc 246
           |||||||| ||||| |||||||||||||||||||||
Sbjct: 247 aagaacctgtacctgtcctgcgacccctacatgcgc 282
to top
>dbj|AK069136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008C06, full
           insert sequence
          Length = 1269

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 361 gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 415
           |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 332 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 386



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 211 aagaacctctacctctcctgcgacccctacatgcgc 246
           |||||||| ||||| |||||||||||||||||||||
Sbjct: 185 aagaacctgtacctgtcctgcgacccctacatgcgc 220
to top
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
             complete sequence
          Length = 170765

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                    
Query: 361   gccggcgacctcgtgtggggcatgaccggctgggaggactacagcgtcatcaagg 415
             |||||||||||||||||||| ||||| || |||||||| |||||| |||||||||
Sbjct: 96086 gccggcgacctcgtgtggggaatgacgggatgggaggagtacagcctcatcaagg 96032



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 211   aagaacctctacctctcctgcgacccctacatgcgc 246
             |||||||| ||||| |||||||||||||||||||||
Sbjct: 96365 aagaacctgtacctgtcctgcgacccctacatgcgc 96330
to top
>ref|NM_190224.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1080

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 211 aagaacctctacctctcctgcgacccctacatgcgc 246
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 166 aagaatctctacctctcctgcgacccctacatgcgc 201
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                    
Query: 211      aagaacctctacctctcctgcgacccctacatgcgc 246
                ||||| ||||||||||||||||||||||||||||||
Sbjct: 38746105 aagaatctctacctctcctgcgacccctacatgcgc 38746140
to top
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1078G07
          Length = 199457

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 211   aagaacctctacctctcctgcgacccctacatgcgc 246
             ||||| ||||||||||||||||||||||||||||||
Sbjct: 18987 aagaatctctacctctcctgcgacccctacatgcgc 19022
to top
>dbj|AK099151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064D04, full
           insert sequence
          Length = 1166

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 211 aagaacctctacctctcctgcgacccctacatgcgc 246
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 199 aagaatctctacctctcctgcgacccctacatgcgc 234
to top
>dbj|AK063674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D10, full
           insert sequence
          Length = 1232

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 211 aagaacctctacctctcctgcgacccctacatgcgc 246
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 232 aagaatctctacctctcctgcgacccctacatgcgc 267
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 200     cggtgctggtcaagaacctctacctctcctgcgacccctacatgcg 245
               ||||| ||||||||||||| ||  |||| |||||||||||||||||
Sbjct: 6931808 cggtggtggtcaagaacctgtatatctcatgcgacccctacatgcg 6931853



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 72      gcggcggcgatcgatggcgg 91
               ||||||||||||||||||||
Sbjct: 6910312 gcggcggcgatcgatggcgg 6910331
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 200     cggtgctggtcaagaacctctacctctcctgcgacccctacatgcg 245
               ||||| ||||||||||||| ||  |||| |||||||||||||||||
Sbjct: 6931687 cggtggtggtcaagaacctgtatatctcatgcgacccctacatgcg 6931732



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 72      gcggcggcgatcgatggcgg 91
               ||||||||||||||||||||
Sbjct: 6910191 gcggcggcgatcgatggcgg 6910210
to top
>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 200   cggtgctggtcaagaacctctacctctcctgcgacccctacatgcg 245
             ||||| ||||||||||||| ||  |||| |||||||||||||||||
Sbjct: 30230 cggtggtggtcaagaacctgtatatctcatgcgacccctacatgcg 30185



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    gcggcggcgatcgatggcgg 91
             ||||||||||||||||||||
Sbjct: 51726 gcggcggcgatcgatggcgg 51707
to top
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 282     cgccgccttcgtcccgggcgcc 303
               ||||||||||||||||||||||
Sbjct: 1281821 cgccgccttcgtcccgggcgcc 1281842
to top
>ref|NM_184568.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 933

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 349 cccggggtcgccgccggcgacc 370
           ||||||||||||||||||||||
Sbjct: 280 cccggggtcgccgccggcgacc 301
to top
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 177    cgtcgacgaggccgaggacggc 198
              ||||||||||||||||||||||
Sbjct: 278176 cgtcgacgaggccgaggacggc 278197
to top
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 177    cgtcgacgaggccgaggacggc 198
              ||||||||||||||||||||||
Sbjct: 190518 cgtcgacgaggccgaggacggc 190539
to top
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 177   cgtcgacgaggccgaggacggc 198
             ||||||||||||||||||||||
Sbjct: 32246 cgtcgacgaggccgaggacggc 32267
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 298   ggcgcccccatcaccggctacggcgt 323
             |||||| |||||||||||||||||||
Sbjct: 14386 ggcgcctccatcaccggctacggcgt 14361



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 341     cctcgacgcccggggtcgccgccgg 365
               ||||||||||||||| |||||||||
Sbjct: 3845831 cctcgacgcccgggggcgccgccgg 3845807
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 177     cgtcgacgaggccgaggacggc 198
               ||||||||||||||||||||||
Sbjct: 3745290 cgtcgacgaggccgaggacggc 3745311



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 178    gtcgacgaggccgaggacggc 198
              |||||||||||||||||||||
Sbjct: 910586 gtcgacgaggccgaggacggc 910606
to top
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 280    accgccgccttcgtcccgggcgccc 304
              ||||||||| |||||||||||||||
Sbjct: 192630 accgccgccgtcgtcccgggcgccc 192654
to top
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 349   cccggggtcgccgccggcgacctcg 373
             ||||||||||||||| |||||||||
Sbjct: 15223 cccggggtcgccgcccgcgacctcg 15247
to top
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 190  gaggacggctcggtgctggtc 210
            |||||||||||||||||||||
Sbjct: 7395 gaggacggctcggtgctggtc 7415
to top
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 177     cgtcgacgaggccgaggacgg 197
               |||||||||||||||||||||
Sbjct: 1765456 cgtcgacgaggccgaggacgg 1765436
to top
>ref|XM_465723.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 347 cgcccggggtcgccgccggcgacc 370
           |||||| |||||||||||||||||
Sbjct: 439 cgcccgaggtcgccgccggcgacc 462
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     gctggtcaagaacctctacc 223
               ||||||||||||||||||||
Sbjct: 2729378 gctggtcaagaacctctacc 2729359
to top
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      ggcggcggcgatcgatggcg 90
               ||||||||||||||||||||
Sbjct: 2253407 ggcggcggcgatcgatggcg 2253388
to top
>emb|X60350.1|MTGROEOP M.tuberculosis groE gene for KCS and 10-kDa products
          Length = 2987

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 192  ggacggctcggtgctggtcaagaa 215
            ||||||||||||| ||||||||||
Sbjct: 2130 ggacggctcggtggtggtcaagaa 2153
to top
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     gcggcgatcgatggcggagc 94
              ||||||||||||||||||||
Sbjct: 970235 gcggcgatcgatggcggagc 970216
to top
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 280 accgccgccttcgtcccgggcgcc 303
           |||||||||||||||| |||||||
Sbjct: 496 accgccgccttcgtcctgggcgcc 519
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     tcgccgccggcgacctcgtg 375
               ||||||||||||||||||||
Sbjct: 2841620 tcgccgccggcgacctcgtg 2841639
to top
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     ggggcatgaccggctgggag 396
               ||||||||||||||||||||
Sbjct: 2545743 ggggcatgaccggctgggag 2545724
to top
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    tcgccgccggcgacctcgtg 375
              ||||||||||||||||||||
Sbjct: 334996 tcgccgccggcgacctcgtg 335015



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    tcgccgccggcgacctcgtg 375
              ||||||||||||||||||||
Sbjct: 245481 tcgccgccggcgacctcgtg 245500



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    tcgccgccggcgacctcgtg 375
              ||||||||||||||||||||
Sbjct: 225140 tcgccgccggcgacctcgtg 225159
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 347      cgcccggggtcgccgccggcgacc 370
                |||||| |||||||||||||||||
Sbjct: 17033195 cgcccgaggtcgccgccggcgacc 17033172
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     caccggctacggcgtgtccg 328
               ||||||||||||||||||||
Sbjct: 1603307 caccggctacggcgtgtccg 1603326
to top
>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0483C08
          Length = 143855

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   cgcccggggtcgccgccggcgacc 370
             |||||| |||||||||||||||||
Sbjct: 14568 cgcccgaggtcgccgccggcgacc 14545
to top
>dbj|AP005322.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0677G01
          Length = 137031

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   cgcccggggtcgccgccggcgacc 370
             |||||| |||||||||||||||||
Sbjct: 84451 cgcccgaggtcgccgccggcgacc 84428
to top
>gb|AE005081.1| Halobacterium sp. NRC-1 section 112 of 170 of the complete genome
          Length = 19293

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   ggtcgccgccggcgacctcg 373
             ||||||||||||||||||||
Sbjct: 10370 ggtcgccgccggcgacctcg 10389
to top
>dbj|AK111178.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-F06, full
            insert sequence
          Length = 2778

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  cggcggcgcccgtcgacgaggccg 190
            ||||| ||||||||||||||||||
Sbjct: 2406 cggcgtcgcccgtcgacgaggccg 2429
to top
>dbj|AK070393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050P07,
          full insert sequence
          Length = 1247

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 72 gcggcggcgatcgatggcgg 91
          ||||||||||||||||||||
Sbjct: 17 gcggcggcgatcgatggcgg 36
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 111     ggtcctcaaggactacgtgg 130
               ||||||||||||||||||||
Sbjct: 2696948 ggtcctcaaggactacgtgg 2696929
to top
>gb|AC152181.1| Mus musculus BAC clone RP24-321P19 from 15, complete sequence
          Length = 187733

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ggcgcacatggagctgctcc 166
              ||||||||||||||||||||
Sbjct: 139561 ggcgcacatggagctgctcc 139542
to top
>gb|L43074.1|STMFABD Streptomyces glaucescens fabD, fabH, fabC, fabB, and ORF5 genes,
            complete cds
          Length = 4558

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 350  ccggggtcgccgccggcgacctcg 373
            ||||||||||||||| ||||||||
Sbjct: 1774 ccggggtcgccgccgccgacctcg 1797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,670,824
Number of Sequences: 3902068
Number of extensions: 2670824
Number of successful extensions: 57056
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55305
Number of HSP's gapped (non-prelim): 1751
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top