ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast57h05 |
|---|---|
| Clone Library Name | barley_pub |
>ZN645_MACFA (Q4R361) Zinc finger protein 645| Length = 422 Score = 53.1 bits (126), Expect = 2e-07 Identities = 21/41 (51%), Positives = 27/41 (65%) Frame = +1 Query: 244 IGRRSRRPLGERVHICSRCEFPIAIYGRLIPCEHAFCLACA 366 IG + P +H C +C+ PI IYGR+IPC+HAFC CA Sbjct: 43 IGEKDDSP----IHFCDKCDLPIKIYGRIIPCKHAFCYNCA 79
>ZN645_HUMAN (Q8N7E2) Zinc finger protein 645| Length = 425 Score = 52.8 bits (125), Expect = 3e-07 Identities = 18/29 (62%), Positives = 23/29 (79%) Frame = +1 Query: 280 VHICSRCEFPIAIYGRLIPCEHAFCLACA 366 +H C +C+ PI IYGR+IPC+HAFC CA Sbjct: 54 IHFCDKCDLPIKIYGRIIPCKHAFCYHCA 82
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 35.4 bits (80), Expect = 0.054 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLACAR----SDSSCYLCDERIQKI 414 C C I R +PC HAFCLAC R +C LC +Q + Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQSL 58
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 35.4 bits (80), Expect = 0.054 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLACAR----SDSSCYLCDERIQKI 414 C C I R +PC HAFCLAC R +C LC +Q + Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQSL 58
>IE61_VZVD (P09309) Transcriptional repressor IE61 (Immediate-early protein| 61) (IE61) Length = 467 Score = 33.9 bits (76), Expect = 0.16 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLACARSDSS----CYLCDERIQKI 414 C+ C ++ G+ +PC H FC C R+ +S C LC +Q I Sbjct: 19 CTICMSTVSDLGKTMPCLHDFCFVCIRAWTSTSVQCPLCRCPVQSI 64
>ESAG8_TRYBB (P23799) Putative adenylate cyclase regulatory protein (Leucine| repeat protein) (VSG expression site-associated protein F14.9) Length = 630 Score = 33.1 bits (74), Expect = 0.27 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 286 ICSRCEFPIAIYG-RLIPCEHAFCLACARSDSSCYLCDERI 405 +C+ C P A L+PC H FC AC C C RI Sbjct: 9 MCAVCREPWAEGAVELLPCRHVFCTACVVQRWRCPSCQRRI 49
>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein| 0) (EP0) Length = 410 Score = 32.7 bits (73), Expect = 0.35 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLACAR----SDSSCYLCDERIQKI 414 C C A + +PC H FCL C + + ++C LC+ R+ I Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTACPLCNARVTSI 91
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLAC----ARSDSSCYLCDERIQKI 414 C C + Y +PC HAFC C R + +C LC ++ + Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLAC----ARSDSSCYLCDERIQKI 414 C C + Y +PC HAFC C R + +C LC ++ + Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>ESA8C_TRYEQ (P26337) Putative adenylate cyclase regulatory protein| Length = 630 Score = 30.8 bits (68), Expect = 1.3 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Frame = +1 Query: 286 ICSRCEFPIAIYG-RLIPCEHAFCLACARSDSSCYLCDERI 405 +C+ C P A L PC H FC C C C RI Sbjct: 9 MCAVCREPWAEGALELFPCRHVFCTVCVVERWRCPSCQRRI 49
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 29.3 bits (64), Expect = 3.8 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%) Frame = +1 Query: 286 ICSRCEFPIAIYGRL--IPCEHAFCLACARS----DSSCYLCDERI 405 +C+ C IA + R PC H FC+ C ++ ++C LC+ ++ Sbjct: 115 VCAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNAKL 160
>R113B_HUMAN (Q8IZP6) RING finger protein 113B (Zinc finger protein 183-like 1)| Length = 322 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 4/25 (16%) Frame = +1 Query: 337 CEHAFCLACA----RSDSSCYLCDE 399 C H FC +CA R+ CY+CD+ Sbjct: 271 CRHYFCESCALEHFRATPRCYICDQ 295
>ZN183_BOVIN (Q67ER4) Zinc finger protein 183| Length = 343 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%) Frame = +1 Query: 337 CEHAFCLACA----RSDSSCYLCDER 402 C H FC +CA R+ CY+CD++ Sbjct: 277 CRHYFCESCALQHFRTTPRCYVCDQQ 302
>R113A_HUMAN (O15541) RING finger protein 113A (Zinc finger protein 183)| Length = 343 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%) Frame = +1 Query: 337 CEHAFCLACA----RSDSSCYLCDER 402 C H FC +CA R+ CY+CD++ Sbjct: 277 CRHYFCESCALQHFRTTPRCYVCDQQ 302
>SUHW_DROME (P08970) Protein suppressor of hairy wing| Length = 941 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 211 VTNSAIAATRAIGRRSRRPLGERVHICSRC 300 V N A A + R +R GER H C C Sbjct: 473 VCNQAFAVKEVLNRHMKRHTGERPHKCDEC 502
>RN139_MOUSE (Q7TMV1) RING finger protein 139| Length = 668 Score = 28.9 bits (63), Expect = 5.0 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Frame = +1 Query: 286 ICSRCEFPIAIYGRLIPCEHAFCLACARS----DSSCYLCDERI 405 +C+ C R+ PC H F C R +C +C +++ Sbjct: 546 VCAICYHEFTTSARITPCNHYFHALCLRKWLYIQDTCPMCHQKV 589
>RN139_HUMAN (Q8WU17) RING finger protein 139 (Translocation in renal carcinoma| on chromosome 8) Length = 664 Score = 28.9 bits (63), Expect = 5.0 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Frame = +1 Query: 286 ICSRCEFPIAIYGRLIPCEHAFCLACARS----DSSCYLCDERI 405 +C+ C R+ PC H F C R +C +C +++ Sbjct: 546 VCAICYHEFTTSARITPCNHYFHALCLRKWLYIQDTCPMCHQKV 589
>PEX2_ARATH (Q9CA86) Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2)| (Pex2p) Length = 333 Score = 28.9 bits (63), Expect = 5.0 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLACARSDSS------CYLCDERIQKI 414 C C+ AI +PC+H +C C R+ + C C+E + I Sbjct: 277 CPICQVDPAIPFIALPCQHRYCYYCIRTRCASAASFRCLRCNEPVVAI 324
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 28.9 bits (63), Expect = 5.0 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%) Frame = +1 Query: 187 AVAKSLGAVTNSAIAATRAIGRRSRRPLGERVH---ICSRCEFPIAIYGRLIPCEHAFCL 357 AVA S A T S +A T R R L V+ IC C+ + ++ C H+FC Sbjct: 230 AVAASSTATTTSDLATTS----RPRPVLLTAVNPHIICHLCQGYLINATTIVECLHSFCH 285 Query: 358 AC----ARSDSSCYLCD 396 +C R + C C+ Sbjct: 286 SCLINHLRKERFCPRCE 302
>SUHW_DROAN (Q08875) Protein suppressor of hairy wing| Length = 886 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 211 VTNSAIAATRAIGRRSRRPLGERVHICSRC 300 V N A A + R +R GER H C C Sbjct: 474 VCNQAFAVKEVLNRHMKRHTGERPHKCEEC 503
>RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 427 Score = 28.9 bits (63), Expect = 5.0 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = +1 Query: 277 RVHICSRCEFPIAIYGRLIPCEHAFCLACAR----SDSSCYLC 393 R HIC +F A L PC H+FC C R +S C LC Sbjct: 31 RCHICK--DFLKASV--LTPCGHSFCSICIRKYLQKESKCPLC 69
>BARD1_MOUSE (O70445) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 765 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Frame = +1 Query: 232 ATRAIGRRSRRPLG--ERVHICSRC----EFPIAIYGRLIPCEHAFCLACARS--DSSCY 387 AT + SR L E++ CSRC + P+ + G CEH FC C S C Sbjct: 23 ATDGLWAHSRAALARLEKLLRCSRCANILKEPVCLGG----CEHIFCSGCISDCVGSGCP 78 Query: 388 LC 393 +C Sbjct: 79 VC 80
>RN146_MOUSE (Q9CZW6) RING finger protein 146| Length = 359 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = +1 Query: 298 CEFPIAIYGRLIPCEHAFCLACARSDS----SCYLCDERI 405 C P+++ PC+H FC C + S C LC + I Sbjct: 45 CVHPVSL-----PCKHVFCYLCVKGASWLGKRCALCRQEI 79
>RN146_HUMAN (Q9NTX7) RING finger protein 146 (Dactylidin)| Length = 359 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = +1 Query: 298 CEFPIAIYGRLIPCEHAFCLACARSDS----SCYLCDERI 405 C P+++ PC+H FC C + S C LC + I Sbjct: 44 CVHPVSL-----PCKHVFCYLCVKGASWLGKRCALCRQEI 78
>ASR1_ASHGO (Q75DC2) Alcohol-sensitive RING finger protein 1| Length = 328 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 9/44 (20%) Frame = +1 Query: 289 CSRC--EFPIAIYGRLIPCEHAFCLACAR-------SDSSCYLC 393 CS C P + GRL+PC H + LAC R + SC +C Sbjct: 18 CSICWESMPSGV-GRLMPCGHEYHLACIRKWFHLHSGNRSCPVC 60
>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 768 Score = 28.5 bits (62), Expect = 6.6 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Frame = +1 Query: 232 ATRAIGRRSRRPLG--ERVHICSRC----EFPIAIYGRLIPCEHAFCLACARS--DSSCY 387 AT + SR L E++ CSRC P+ + G CEH FC C S C Sbjct: 23 ATDGLWAHSRAALARLEKLLRCSRCANILREPVCLGG----CEHIFCSGCISDCVGSGCP 78 Query: 388 LC 393 +C Sbjct: 79 VC 80
>TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger protein 94) (50| kDa-stimulated trans-acting factor) (Staf-50) Length = 498 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 11/37 (29%) Frame = +1 Query: 331 IPCEHAFCLAC-----------ARSDSSCYLCDERIQ 408 + C H+FC AC +R +SSC +C R Q Sbjct: 28 LDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQ 64
>FUR2_DROME (P30432) Furin-like protease 2 precursor (EC 3.4.21.75) (Furin-2)| Length = 1679 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLAC-ARSDSSCYLC 393 CS EF + G+ PC HA C +C +D+SC C Sbjct: 1198 CSESEFYSQVEGQCRPC-HASCGSCNGPADTSCTSC 1232
>SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed with cdc5| protein 5) (Cell cycle control protein cwf5) Length = 354 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Frame = +1 Query: 250 RRSRRPLGERVHICSRCEFPIAIYGRL-----IPCEHAFCLACARSDSSCYLC 393 R ++ PLG+ ICS+ P I+ + P + C+ CAR + C C Sbjct: 34 RMTKEPLGQECKICSK---PCTIFRWIKERGQKPGKTQICVGCARYKNCCQSC 83
>ZFP_IRV6 (P47732) Zinc finger protein| Length = 208 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLACARSDSSCYLCDERIQKI 414 C C F I LIPC H+ C C +C +C KI Sbjct: 163 CKIC-FTNKITKVLIPCGHSSCYECVFKLQTCPICKNNFIKI 203
>HAIR_MOUSE (Q61645) Protein hairless| Length = 1182 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = +1 Query: 283 HICSRCEFPIA-IYGRLIPCEHAFCLACAR 369 H CSRC + + R C H C+AC R Sbjct: 593 HCCSRCHHGLFNTHWRCSHCSHRLCVACGR 622
>HAIR_RAT (P97609) Protein hairless| Length = 1181 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = +1 Query: 283 HICSRCEFPIA-IYGRLIPCEHAFCLACAR 369 H CSRC + + R C H C+AC R Sbjct: 592 HCCSRCHHGLFNTHWRCSHCSHRLCVACGR 621
>RN146_PONPY (Q5REL3) RING finger protein 146| Length = 358 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = +1 Query: 298 CEFPIAIYGRLIPCEHAFCLACARSDS----SCYLCDERI 405 C P+++ PC+H FC C + S C LC + I Sbjct: 43 CVHPVSL-----PCKHVFCYLCVKGASWLGKRCALCRQEI 77
>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)| Length = 544 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +1 Query: 319 YGRLIPCEHAFCLACARSDSSCYLCDERIQK 411 +G L C H +CL C R S + RI K Sbjct: 365 FGILFSCNHTYCLRCIRRWRSATQFENRISK 395
>RN146_RAT (Q5XIK5) RING finger protein 146| Length = 352 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = +1 Query: 298 CEFPIAIYGRLIPCEHAFCLACARSDS----SCYLCDERI 405 C P+++ PC+H FC C + S C LC + I Sbjct: 43 CVHPVSL-----PCKHVFCYLCVKGASWLGKRCALCRQEI 77
>IAP2_NPVAC (P41454) Probable apoptosis inhibitor 2 (IAP-2)| Length = 249 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +1 Query: 265 PLGERVHICSRCEFPIAIYGRLIPCEH-AFCLACARSDSSCYLCDERIQK 411 PL ++V C C F +PC H A C C+R C +C+ +I + Sbjct: 194 PLTQQVSECKVC-FDREKSVCFMPCRHLAVCTECSRRCKRCCVCNAKIMQ 242
>CWC24_NEUCR (Q7SDY3) Pre-mRNA-splicing factor cwc-24| Length = 405 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Frame = +1 Query: 289 CSRCEFPIAIYGRLIPCEHAFCLACA----RSDSSCYLC 393 C C P + + C H FC ACA R D SC C Sbjct: 310 CIICRGPYSNSPVVTRCGHYFCEACALKRYRKDPSCAAC 348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,367,462 Number of Sequences: 219361 Number of extensions: 386722 Number of successful extensions: 1626 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 1582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1626 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
