ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor 28 8.7
2SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sem... 28 8.7
3CWC21_YARLI (Q6C0M9) Pre-mRNA-splicing factor CWC21 28 8.7

>SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor|
          Length = 833

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 38  PDQPTPTPTRRHVPGGGR 91
           P QP P+PTR H+ GGGR
Sbjct: 766 PGQPLPSPTRLHL-GGGR 782



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>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)|
           (Semaphorin C-like 1) (M-Sema F)
          Length = 834

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 38  PDQPTPTPTRRHVPGGGR 91
           P QP P+PTR H+ GGGR
Sbjct: 767 PGQPLPSPTRLHL-GGGR 783



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>CWC21_YARLI (Q6C0M9) Pre-mRNA-splicing factor CWC21|
          Length = 284

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 152 AARERAPHHRGRRPR 108
           +ARER+P  RGRRPR
Sbjct: 190 SARERSPSRRGRRPR 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,030,693
Number of Sequences: 219361
Number of extensions: 279433
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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