| Clone Name | bast57h01 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor | 28 | 8.7 | 2 | SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sem... | 28 | 8.7 | 3 | CWC21_YARLI (Q6C0M9) Pre-mRNA-splicing factor CWC21 | 28 | 8.7 |
|---|
>SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor| Length = 833 Score = 27.7 bits (60), Expect = 8.7 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +2 Query: 38 PDQPTPTPTRRHVPGGGR 91 P QP P+PTR H+ GGGR Sbjct: 766 PGQPLPSPTRLHL-GGGR 782
>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)| (Semaphorin C-like 1) (M-Sema F) Length = 834 Score = 27.7 bits (60), Expect = 8.7 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +2 Query: 38 PDQPTPTPTRRHVPGGGR 91 P QP P+PTR H+ GGGR Sbjct: 767 PGQPLPSPTRLHL-GGGR 783
>CWC21_YARLI (Q6C0M9) Pre-mRNA-splicing factor CWC21| Length = 284 Score = 27.7 bits (60), Expect = 8.7 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 152 AARERAPHHRGRRPR 108 +ARER+P RGRRPR Sbjct: 190 SARERSPSRRGRRPR 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,030,693 Number of Sequences: 219361 Number of extensions: 279433 Number of successful extensions: 1031 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1028 length of database: 80,573,946 effective HSP length: 37 effective length of database: 72,457,589 effective search space used: 1738982136 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)