| Clone Name | bast57g12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 82 ccatggcgagcagcggcagcctggccggtctggcgg 117 ||||||||||||||||| | |||||||||||||||| Sbjct: 63 ccatggcgagcagcggcgggctggccggtctggcgg 98
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gcggcagcctggccggtctg 113 |||||||||||||||||||| Sbjct: 4650072 gcggcagcctggccggtctg 4650053
>gb|AC146547.2| Gasterosteus aculeatus clone CH213-33E5, complete sequence Length = 207268 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 ggcgagcagcggcagcctg 104 ||||||||||||||||||| Sbjct: 103678 ggcgagcagcggcagcctg 103696
>ref|XM_380519.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00343.1) partial mRNA Length = 2952 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acccattactgctgtgcag 19 ||||||||||||||||||| Sbjct: 1752 acccattactgctgtgcag 1770
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 gcagcggcagcctggccgg 109 ||||||||||||||||||| Sbjct: 3005842 gcagcggcagcctggccgg 3005860
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 gcagcggcagcctggccgg 109 ||||||||||||||||||| Sbjct: 2454158 gcagcggcagcctggccgg 2454140
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agctaagctaagctagcca 81 ||||||||||||||||||| Sbjct: 344028 agctaagctaagctagcca 344046
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agctaagctaagctagcca 81 ||||||||||||||||||| Sbjct: 340430 agctaagctaagctagcca 340448
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 cttcagctaagctaagcta 77 ||||||||||||||||||| Sbjct: 4205264 cttcagctaagctaagcta 4205246
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 cttcagctaagctaagcta 77 ||||||||||||||||||| Sbjct: 7258723 cttcagctaagctaagcta 7258741
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 cttcagctaagctaagcta 77 ||||||||||||||||||| Sbjct: 60153 cttcagctaagctaagcta 60171
>gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, complete sequence Length = 224634 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 catggcgagcagcggcagc 101 ||||||||||||||||||| Sbjct: 192591 catggcgagcagcggcagc 192609
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 cttcagctaagctaagcta 77 ||||||||||||||||||| Sbjct: 50485 cttcagctaagctaagcta 50467
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 cgagcagcggcagcctggc 106 ||||||||||||||||||| Sbjct: 2823566 cgagcagcggcagcctggc 2823548
>dbj|AK065945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049F17, full insert sequence Length = 2088 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agctaagctaagctagcca 81 ||||||||||||||||||| Sbjct: 30 agctaagctaagctagcca 48
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agctaagctaagctagcca 81 ||||||||||||||||||| Sbjct: 340430 agctaagctaagctagcca 340448
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agctaagctaagctagcca 81 ||||||||||||||||||| Sbjct: 344028 agctaagctaagctagcca 344046
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agctaagctaagctagcca 81 ||||||||||||||||||| Sbjct: 77079 agctaagctaagctagcca 77097
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agctaagctaagctagcca 81 ||||||||||||||||||| Sbjct: 47748 agctaagctaagctagcca 47766 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 769,547 Number of Sequences: 3902068 Number of extensions: 769547 Number of successful extensions: 58857 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58323 Number of HSP's gapped (non-prelim): 534 length of query: 117 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 96 effective length of database: 17,151,101,840 effective search space: 1646505776640 effective search space used: 1646505776640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)