>gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds
          Length = 615

 Score =  272 bits (137), Expect = 8e-70
 Identities = 140/141 (99%)
 Strand = Plus / Plus

                                                                       
Query: 265 cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 74

                                                                       
Query: 325 gaaggacaagaaaacaactgctgtggtgatcggtggcacaactgtcatatgggttttatt 384
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  gaagaacaagaaaacaactgctgtggtgatcggtggcacaactgtcatatgggttttatt 134

                                
Query: 385 tgaagtgcttgattaccatct 405
           |||||||||||||||||||||
Sbjct: 135 tgaagtgcttgattaccatct 155



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  atggccgatccagccgagga 102
           ||||||||||||||||||||
Sbjct: 1   atggccgatccagccgagga 20

>dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051P18, full
           insert sequence
          Length = 1147

 Score =  186 bits (94), Expect = 4e-44
 Identities = 142/158 (89%)
 Strand = Plus / Plus

                                                                       
Query: 248 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaact 307
           ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||
Sbjct: 238 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaact 297

                                                                       
Query: 308 gctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaact 367
           ||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||||
Sbjct: 298 gctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaact 357

                                                 
Query: 368 gtcatatgggttttatttgaagtgcttgattaccatct 405
           ||||||||| | || |||||||||||||||||||||||
Sbjct: 358 gtcatatggatcttgtttgaagtgcttgattaccatct 395

>gb|AY104742.1| Zea mays PCO152525 mRNA sequence
          Length = 1163

 Score =  127 bits (64), Expect = 3e-26
 Identities = 139/164 (84%)
 Strand = Plus / Plus

                                                                       
Query: 239 aggtcccgtgggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggc 298
           |||||||| || |||||||| || || |||||||| |||||||||||    ||||| |||
Sbjct: 236 aggtcccggggattcaggcttcttggagaggacacttccgtgcacaaatcccttgggggc 295

                                                                       
Query: 299 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 358
           |||||||||||||| || ||||||||||| |||||||||||  ||||||| || || || 
Sbjct: 296 ggtaaaactgctgacgttctgttatggaaagacaagaaaacttctgctgttgtaataggc 355

                                                       
Query: 359 ggcacaactgtcatatgggttttatttgaagtgcttgattacca 402
           ||| |||||||||| |||||| | || |||||||||||||||||
Sbjct: 356 ggcgcaactgtcatctgggttctgttcgaagtgcttgattacca 399

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  103 bits (52), Expect = 4e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                            
Query: 306      ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 365
                ||||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||
Sbjct: 17621503 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaa 17621562

                                                        
Query: 366      ctgtcatatgggttttatttgaagtgcttgattaccatct 405
                ||||||||||| | || |||||||||||||||||||||||
Sbjct: 17621563 ctgtcatatggatcttgtttgaagtgcttgattaccatct 17621602



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 248      gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaa 305
                ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 17619068 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 17619125



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 168     agccgccggccagcgccgacgcctcgccggagaagg 203
               |||||||||||  ||||| |||| ||||||||||||
Sbjct: 5627397 agccgccggccgccgccgccgccgcgccggagaagg 5627432

>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score =  103 bits (52), Expect = 4e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                         
Query: 306   ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 365
             ||||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||
Sbjct: 47851 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaa 47910

                                                     
Query: 366   ctgtcatatgggttttatttgaagtgcttgattaccatct 405
             ||||||||||| | || |||||||||||||||||||||||
Sbjct: 47911 ctgtcatatggatcttgtttgaagtgcttgattaccatct 47950



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 248   gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaa 305
             ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 45416 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 45473

>dbj|AK104196.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H05, full
           insert sequence
          Length = 993

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                       
Query: 299 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 358
           |||||| ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||
Sbjct: 183 ggtaaagctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggt 242

                                                        
Query: 359 ggcacaactgtcatatgggttttatttgaagtgcttgattaccat 403
           ||| |||||||  | |||||| | ||||||||  |||||||||||
Sbjct: 243 ggcgcaactgtgttgtgggttctctttgaagttgttgattaccat 287

>dbj|AK072628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130B01, full
           insert sequence
          Length = 880

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                       
Query: 299 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 358
           |||||| ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||
Sbjct: 65  ggtaaagctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggt 124

                                                        
Query: 359 ggcacaactgtcatatgggttttatttgaagtgcttgattaccat 403
           ||| |||||||  | |||||| | ||||||||  |||||||||||
Sbjct: 125 ggcgcaactgtgttgtgggttctctttgaagttgttgattaccat 169

>dbj|AK059921.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G09, full
           insert sequence
          Length = 1028

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                       
Query: 299 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 358
           |||||| ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||
Sbjct: 232 ggtaaagctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggt 291

                                                        
Query: 359 ggcacaactgtcatatgggttttatttgaagtgcttgattaccat 403
           ||| |||||||  | |||||| | ||||||||  |||||||||||
Sbjct: 292 ggcgcaactgtgttgtgggttctctttgaagttgttgattaccat 336

>gb|AY105560.1| Zea mays PCO120447 mRNA sequence
          Length = 1191

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 299 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 358
           |||||||||||||||||||| || ||||| |||||||| ||  |||||| |||  | |||
Sbjct: 258 ggtaaaactgctgatgtacttttgtggaaagacaagaagacctctgctgcggtagttggt 317

                                
Query: 359 ggcacaactgtcatatgggtt 379
           ||  |||||||| ||||||||
Sbjct: 318 ggtgcaactgtcctatgggtt 338

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                           
Query: 306     ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 365
               ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 9498262 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 9498321

                                                     
Query: 366     ctgtcatatgggttttatttgaagtgcttgattaccat 403
               ||||  | |||||| | ||||||||  |||||||||||
Sbjct: 9498322 ctgtgttgtgggttctctttgaagttgttgattaccat 9498359

>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0006C08
          Length = 151987

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                          
Query: 306    ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 365
              ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 111823 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 111882

                                                    
Query: 366    ctgtcatatgggttttatttgaagtgcttgattaccat 403
              ||||  | |||||| | ||||||||  |||||||||||
Sbjct: 111883 ctgtgttgtgggttctctttgaagttgttgattaccat 111920

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 171     cgccggccagcgccgacgcctcgccg 196
               ||||||||||||||| ||||||||||
Sbjct: 3839555 cgccggccagcgccgccgcctcgccg 3839530

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 187     cgcctcgccggagaaggcggcc 208
               ||||||||||||||||||||||
Sbjct: 1027165 cgcctcgccggagaaggcggcc 1027144

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 187    cgcctcgccggagaaggcggcc 208
              ||||||||||||||||||||||
Sbjct: 700139 cgcctcgccggagaaggcggcc 700118

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 211     gcccgcgtctgcgccggacaccacggtcaggtc 243
               ||||||||| ||| ||||||| |||||||||||
Sbjct: 2094902 gcccgcgtccgcgtcggacacgacggtcaggtc 2094934

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 174     cggccagcgccgacgcctcgccgg 197
               |||||||||||| |||||||||||
Sbjct: 2462038 cggccagcgccgccgcctcgccgg 2462061

>ref|XM_870740.1| PREDICTED: Bos taurus similar to Interferon regulatory factor 4
            (IRF-4) (Lymphocyte specific interferon regulatory
            factor) (LSIRF) (NF-EM5) (Multiple myeloma oncogene 1)
            (LOC618409), mRNA
          Length = 1584

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  cggagccgccggccagcgcc 184
            ||||||||||||||||||||
Sbjct: 1085 cggagccgccggccagcgcc 1104

>gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complete sequence
          Length = 128361

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   aggcggccccgcccgcgtct 220
             ||||||||||||||||||||
Sbjct: 28377 aggcggccccgcccgcgtct 28358

>emb|Z69665.2|CEZK897 Caenorhabditis elegans Cosmid ZK897, complete sequence
          Length = 29518

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   tcatatgggttttatttgaa 388
             ||||||||||||||||||||
Sbjct: 29470 tcatatgggttttatttgaa 29489

>emb|Z69659.1|CEF07C6 Caenorhabditis elegans Cosmid F07C6, complete sequence
          Length = 34797

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 tcatatgggttttatttgaa 388
           ||||||||||||||||||||
Sbjct: 58  tcatatgggttttatttgaa 77

>gb|DQ067486.1|DQ067486S1 Lemur catta msh homeobox 1-like protein (MSX1) gene, exon 1
          Length = 1600

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gccggagaaggcggccccgc 212
            ||||||||||||||||||||
Sbjct: 1351 gccggagaaggcggccccgc 1370

>ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family
           member (rps-29) (rps-29) mRNA, complete cds
          Length = 321

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 213 ccgcgtctgcgccggacaccacgg 236
           |||||||||||| |||||||||||
Sbjct: 77  ccgcgtctgcgctggacaccacgg 100

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 181      cgccgacgcctcgccggaga 200
                ||||||||||||||||||||
Sbjct: 25454204 cgccgacgcctcgccggaga 25454185

>gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, complete sequence
          Length = 68731

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 213   ccgcgtctgcgccggacaccacgg 236
             |||||||||||| |||||||||||
Sbjct: 63580 ccgcgtctgcgctggacaccacgg 63603

>gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, complete sequence
          Length = 39067

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ggtgatcggtggcacaactg 368
             ||||||||||||||||||||
Sbjct: 23718 ggtgatcggtggcacaactg 23699

>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0021C04
          Length = 162115

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 168   agccgccggccagcgccgacgcctcgccggagaagg 203
             |||||||||||  ||||| |||| ||||||||||||
Sbjct: 19544 agccgccggccgccgccgccgccgcgccggagaagg 19579

>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0711H09
          Length = 185858

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cgccgacgcctcgccggaga 200
             ||||||||||||||||||||
Sbjct: 85520 cgccgacgcctcgccggaga 85501

>gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence
          Length = 33975

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 213  ccgcgtctgcgccggacaccacgg 236
            |||||||||||| |||||||||||
Sbjct: 5647 ccgcgtctgcgctggacaccacgg 5670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,478,374
Number of Sequences: 3902068
Number of extensions: 2478374
Number of successful extensions: 50199
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49646
Number of HSP's gapped (non-prelim): 552
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)