ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CATA_STRCO (Q9Z598) Catalase (EC 1.11.1.6) 29 3.9
2Y567_BUCAP (Q8K902) Hypothetical transport protein BUsg567 28 6.6
3MMP3_HUMAN (P08254) Stromelysin-1 precursor (EC 3.4.24.17) (Matr... 28 6.6

>CATA_STRCO (Q9Z598) Catalase (EC 1.11.1.6)|
          Length = 487

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 7   HQGPSQTPSPLSTAMDADADTVVFEAPAHFR---FYKSGKIERL 129
           + GP++T +PL+  +     T   EAP H +   F ++G + RL
Sbjct: 390 YDGPAETGTPLAAPLAVSGHTGTHEAPLHTKDDHFVQAGALYRL 433



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>Y567_BUCAP (Q8K902) Hypothetical transport protein BUsg567|
          Length = 413

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -1

Query: 125 RSILPLL*KRKCAGASNTTVSASASMAVESGDGVWLGP 12
           +SILP+  K+ C  A+ +++S SA+ A  S   +++GP
Sbjct: 56  QSILPVFSKQFCLTATESSLSLSAATATMSIGTLFIGP 93



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>MMP3_HUMAN (P08254) Stromelysin-1 precursor (EC 3.4.24.17) (Matrix|
           metalloproteinase-3) (MMP-3) (Transin-1) (SL-1)
          Length = 477

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 139 PILPAGVDEATGVTSKDVV 195
           P LP+GVD A  VTSKD+V
Sbjct: 334 PSLPSGVDAAYEVTSKDLV 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,070,496
Number of Sequences: 219361
Number of extensions: 372973
Number of successful extensions: 1173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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