ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT016862.1| Zea mays clone Contig695 mRNA sequence 40 0.99
2gb|AC114478.2| Homo sapiens chromosome 3 clone RP11-333K5, compl... 40 0.99
3emb|AL445886.3|CNS07EET Human chromosome 14 DNA sequence BAC R-3... 40 0.99
4gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Ho... 40 0.99
5emb|AL163953.3|CNS05TBQ Human chromosome 14 DNA sequence BAC R-5... 40 0.99
6emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chro... 38 3.9
7ref|XM_683155.1| PREDICTED: Danio rerio similar to angiomotin li... 38 3.9
8ref|XM_689798.1| PREDICTED: Danio rerio similar to angiomotin li... 38 3.9
9emb|BX649390.12| Zebrafish DNA sequence from clone DKEY-261L2 in... 38 3.9
10gb|AY108697.1| Zea mays PCO126508 mRNA sequence 38 3.9
11gb|AY106981.1| Zea mays PCO102385 mRNA sequence 38 3.9

>gb|BT016862.1| Zea mays clone Contig695 mRNA sequence
          Length = 1573

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 30   caagccacgccgctcagaacccta 53
            |||||||||||||||| |||||||
Sbjct: 1513 caagccacgccgctcaaaacccta 1490



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>gb|AC114478.2| Homo sapiens chromosome 3 clone RP11-333K5, complete sequence
          Length = 158276

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     gatgactcagctccaagcca 36
              ||||||||||||||||||||
Sbjct: 151211 gatgactcagctccaagcca 151230



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>emb|AL445886.3|CNS07EET Human chromosome 14 DNA sequence BAC R-369B6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167398

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    gatgactcagctccaagcca 36
             ||||||||||||||||||||
Sbjct: 76155 gatgactcagctccaagcca 76174



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>gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 169902

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     gatgactcagctccaagcca 36
              ||||||||||||||||||||
Sbjct: 101635 gatgactcagctccaagcca 101616



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>emb|AL163953.3|CNS05TBQ Human chromosome 14 DNA sequence BAC R-533L7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162986

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     gatgactcagctccaagcca 36
              ||||||||||||||||||||
Sbjct: 119958 gatgactcagctccaagcca 119977



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>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part of
              the EPHB2 gene for EphB2 and a novel gene, complete
              sequence
          Length = 126589

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     gatgactcagctccaagcc 35
              |||||||||||||||||||
Sbjct: 124051 gatgactcagctccaagcc 124069



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>ref|XM_683155.1| PREDICTED: Danio rerio similar to angiomotin like 2 (LOC559784), mRNA
          Length = 2300

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 19   tgactcagctccaagccac 37
            |||||||||||||||||||
Sbjct: 1223 tgactcagctccaagccac 1241



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>ref|XM_689798.1| PREDICTED: Danio rerio similar to angiomotin like 2 (LOC566525), mRNA
          Length = 2300

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 19   tgactcagctccaagccac 37
            |||||||||||||||||||
Sbjct: 1223 tgactcagctccaagccac 1241



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>emb|BX649390.12| Zebrafish DNA sequence from clone DKEY-261L2 in linkage group 2,
             complete sequence
          Length = 184594

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    tgactcagctccaagccac 37
             |||||||||||||||||||
Sbjct: 40646 tgactcagctccaagccac 40628



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>gb|AY108697.1| Zea mays PCO126508 mRNA sequence
          Length = 1558

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 30  caagccacgccgctcagaaccctagcc 56
           |||||||||||| ||| ||||||||||
Sbjct: 90  caagccacgccgatcaaaaccctagcc 116



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>gb|AY106981.1| Zea mays PCO102385 mRNA sequence
          Length = 923

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 18  atgactcagctccaagcca 36
           |||||||||||||||||||
Sbjct: 737 atgactcagctccaagcca 719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 340,296
Number of Sequences: 3902068
Number of extensions: 340296
Number of successful extensions: 17602
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17587
Number of HSP's gapped (non-prelim): 15
length of query: 91
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 70
effective length of database: 17,151,101,840
effective search space: 1200577128800
effective search space used: 1200577128800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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