>ATG17_NEUCR (Q872W1) Autophagy-related protein 17|
          Length = 568

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 30/93 (32%), Positives = 42/93 (45%)
 Frame = -3

Query: 335 SCTPPWSLSPLRASKPRRVLLTMRMQRKPLPTSLLSVHSTDASSYAGLNGTSFTGWDWPM 156
           S +PP +LSP  A +PRR   T            LS  S       G + + F   D P+
Sbjct: 8   SPSPPAALSPDDAPQPRRPSRTSLHDAAAAAAPALSPESPGHELEDGADSSEFNADDVPV 67

Query: 155 ECLTARPVALLTSAKAGMPSSSLTVVLKRMSLS 57
           E L    V  L +AK  +  SS+T+VL+   L+
Sbjct: 68  EVL----VKHLLAAKQSL--SSMTLVLRANDLA 94

>EXPA_DROME (Q07436) Protein expanded|
          Length = 1427

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = -3

Query: 338  PSCTPPWSLSPLRASKP---RRVLLTMRMQRKPLPTSLLSVHST--DASSYAGLNGTSFT 174
            P C+PP   +P+ A  P   RR      +  KP PTSL+SV S+   A S AG + +S  
Sbjct: 821  PPCSPPVPPAPIPAPPPAIRRRDPPPYSISSKPRPTSLISVSSSAHPAPSAAG-SMSSLK 879

Query: 173  GWDWPMECLTARPVALLTSAKAGM 102
              +     +T RP   +  A   +
Sbjct: 880  SEEVTARFITTRPQISILKAHTSL 903

>CAC1C_MOUSE (Q01815) Voltage-dependent L-type calcium channel alpha-1C subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.2)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 1,
            cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC)
          Length = 2139

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
 Frame = -3

Query: 377  LSPL---HHSQSTTVVPSCTPPWSLSPLRASKPRRVLLTMRMQ----RKPLPTSLLSVH- 222
            LSPL    HS +T   P  TPP  ++P    +P R + T+R++     + L +S  S+H 
Sbjct: 1934 LSPLLQRSHSPTTFPRPCPTPP--VTPGSRGRPLRPIPTLRLEGAESSEKLNSSFPSIHC 1991

Query: 221  STDASSYAGLNGTSFTGWDWPMECLTARPVALLTSAKAGMP 99
            S+ +      +G+S            ARPV+L   ++AG P
Sbjct: 1992 SSWSEETTACSGSSSMA-------RRARPVSLTVPSQAGAP 2025

>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.2)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 1,
            cardiac muscle) (RAT brain class C) (RBC)
          Length = 2169

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
 Frame = -3

Query: 377  LSPL---HHSQSTTVVPSCTPPWSLSPLRASKPRRVLLTMRMQ----RKPLPTSLLSVHS 219
            LSPL    HS ST   P  TPP  ++P    +P + + T+R++     + L +S  S+H 
Sbjct: 1964 LSPLLQRSHSPSTFPRPRPTPP--VTPGSRGRPLQPIPTLRLEGAESSEKLNSSFPSIHC 2021

Query: 218  TDAS--SYAGLNGTSFTGWDWPMECLTARPVALLTSAKAGMP 99
            +  S  + A   G+S            ARPV+L   ++AG P
Sbjct: 2022 SSWSEETTACSGGSSMAR--------RARPVSLTVPSQAGAP 2055

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 16/66 (24%)
 Frame = +3

Query: 60  QGHALQH---------HRQG------RRGHAGLRARQQGHRPRRQA-LHRPVPPREAGAV 191
           +GHA +H         HR G       RGH     RQQGH P      HR     E G  
Sbjct: 590 EGHAEEHQTEVPGHHQHRMGDTDTSAERGHPASSPRQQGHPPEDTVHHHRGSLKEEVGPE 649

Query: 192 QPGVRG 209
            PG  G
Sbjct: 650 SPGPAG 655

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 147  QALHRPVPPREAGAVQPGVRG-RVGAVDGEQGR 242
            QA  RPVPPRE G++ P + G RVG   G +GR
Sbjct: 1429 QASARPVPPRERGSL-PVIEGTRVGQEPGGRGR 1460

>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)|
           (11 kDa core protein)
          Length = 79

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 78  HHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDG 230
           H R+G  GH      ++ H  RR+A HR +       + P +   +GAV G
Sbjct: 18  HRRRGMAGHGLTGGMRRAHHRRRRASHRRMRGGILPLLIPLIAAAIGAVPG 68

>KRUH_DROME (P08155) Krueppel homologous protein 1|
          Length = 845

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
 Frame = -3

Query: 422 TAACASAHGQTFQHWLSPLHHSQSTTVVPSCTPPWSLSPLRASKPR---RVLLTMRMQRK 252
           T+A +SA   + Q   S   +S+S+   P  +PP +  P +A +PR    V  T+ +   
Sbjct: 483 TSAGSSAGSPSLQGVSS---NSESSNHSPPSSPPATKKPRQARQPRVSKTVAATLSIPTS 539

Query: 251 -PL-PTSLLSVHSTDASSYAGLNGTS 180
            PL P+SL S +S  ASS A    TS
Sbjct: 540 SPLSPSSLSSTYSPSASSMASPPPTS 565

>REP1_ZYGRO (P13778) Trans-acting factor B (REP1)|
          Length = 410

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 29/105 (27%), Positives = 44/105 (41%)
 Frame = +1

Query: 10  EVVLAPVNPKDETQHWLKDMRFSTTVKDEEGMPAFALVNKATGLAVKHSIGQSHPVKLVP 189
           E  L PVN +   Q + + +   T V++ E      L      ++ K  +GQS  ++++ 
Sbjct: 147 ENFLDPVNARPRLQRFFEKLHNGTLVENLE----VGLCKVEILVSSKAMLGQSFKLQIMA 202

Query: 190 FNPAYEDASVLWTESKDVGKGFRCIRMVNNTRLGFDALNGDKDHG 324
            N        LW     VG+   C  + N T  GFD   GD D G
Sbjct: 203 AN-----VRELW-----VGE-MVCNMITNETDYGFDEGGGDDDEG 236

>MUC15_MOUSE (Q8C6Z1) Mucin-15 precursor|
          Length = 331

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 22/93 (23%), Positives = 38/93 (40%)
 Frame = -3

Query: 362 HSQSTTVVPSCTPPWSLSPLRASKPRRVLLTMRMQRKPLPTSLLSVHSTDASSYAGLNGT 183
           HS ST         WSL     + P  +  T+R    P  T+ ++  + + + +   N  
Sbjct: 134 HSNSTNSPSPENFTWSLDNDTMNSPEDISTTVRPFPPPPKTTPVTPFTAEPTEWLPTNND 193

Query: 182 SFTGWDWPMECLTARPVALLTSAKAGMPSSSLT 84
           +F G+    E  T +P    T+     P++S T
Sbjct: 194 NFAGFTPYQEKTTLQPTLKFTNNSKLFPNTSDT 226

>PLXC1_HUMAN (O60486) Plexin-C1 precursor (Virus-encoded semaphorin protein|
           receptor)
          Length = 1568

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 26/101 (25%), Positives = 40/101 (39%)
 Frame = -3

Query: 422 TAACASAHGQTFQHWLSPLHHSQSTTVVPSCTPPWSLSPLRASKPRRVLLTMRMQRKPLP 243
           + +C      + +H LS L+  Q+     +CT P SL+P    +P               
Sbjct: 61  SGSCLDQLDYSLEHSLSRLYRDQAG----NCTEPVSLAPPARPRPGSSF----------- 105

Query: 242 TSLLSVHSTDASSYAGLNGTSFTGWDWPMECLTARPVALLT 120
           + LL  +   A   AGL G   TGW +       RP+  L+
Sbjct: 106 SKLLLPYREGA---AGLGGLLLTGWTFDRGACEVRPLGNLS 143

>VMSA_HPBDC (P30029) Major surface antigen precursor|
          Length = 365

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 356 QSTTVVPSCTPPWSLSP 306
           ++TT+ PS TPPW L P
Sbjct: 146 ETTTIPPSSTPPWKLQP 162

>PLSX_DEIRA (Q46578) Fatty acid/phospholipid synthesis protein plsX|
          Length = 360

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 72  LQHHRQGRRGHAGLRARQQGHRPRRQ---ALHRPVPPREAG-AVQPGVRGRVG 218
           L+     R   AGL   +Q  RPRRQ   A  RP P   AG A   GVRG  G
Sbjct: 298 LRREHLDRGAGAGLYRPRQRRRPRRQKRRAACRPRPRSAAGRAPGSGVRGAAG 350

>VGLE_CHV1 (P30816) Glycoprotein E homolog (Fragment)|
          Length = 64

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 48  PALAQGHALQHHRQGRRGHAGLRARQQGHRP 140
           P+ A G      R+  RGH G  ARQ GH P
Sbjct: 32  PSEAPGSRSSPGRRRTRGHRGAAARQPGHLP 62

>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 114 RARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVG--AVDGEQG 239
           RAR+Q   P  QAL +  PP   G   PG  G  G   VDG+ G
Sbjct: 71  RARRQAALPDCQALAKNCPPGPPG--PPGAPGAAGEPGVDGDAG 112

>IE63_PRVKA (Q85232) Transcriptional regulator IE63 homolog (Protein UL54)|
          Length = 361

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
 Frame = +3

Query: 48  PALAQGHALQHHRQGRRGHAGLRA------------RQQGHRPRRQALHRP-----VPP- 173
           P  A+  A++  R GR G A  +A            RQQ H+ RRQ   RP      PP 
Sbjct: 36  PVRARLGAIRRRRGGRGGRAARQALRQRRRQQQQQQRQQQHQRRRQEADRPDGGPDAPPD 95

Query: 174 ---REAGAVQPGVRGRVGA 221
                A A       RVGA
Sbjct: 96  RLSESARAAVSATHARVGA 114

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +3

Query: 63   GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGR 212
            G      R+  RG    R + + HRP     H   P R  G V PGV  R
Sbjct: 2197 GDLPSREREQERG----RPKDRKHRPHHHHHHHHHPGRGPGRVSPGVSAR 2242

>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1207

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 LNGDKDHGGVHDGTTVVLWEWCKGDN 378
           +N D DH    DG  ++  EW KG N
Sbjct: 490 INHDNDHPSCADGLHIMSGEWIKGQN 515

>ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1210

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 LNGDKDHGGVHDGTTVVLWEWCKGDN 378
           +N D DH    DG  ++  EW KG N
Sbjct: 493 INHDNDHPSCADGLHIMSGEWIKGQN 518

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/57 (36%), Positives = 23/57 (40%)
 Frame = +3

Query: 63  GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDGE 233
           GH   HH +GRRG    R R QG    R            GA  P VR R+    GE
Sbjct: 230 GHGDGHHLEGRRG----RPRPQGREAGR------------GAHPPQVRARIYLAAGE 270



 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 75  QHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAV---QPGVRGR 212
           Q H+  R  HA  R  Q G  PRRQ L     PR AG     QP  RGR
Sbjct: 134 QQHQHPRGRHASDRV-QDGAHPRRQRLRE--QPRHAGRPRRRQPPRRGR 179

>SYK_HAEDU (Q7VLU5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 498

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
 Frame = +1

Query: 115 ALVNKATGLAVKHSIGQ-----SHPVKLVPF------NPAYEDASVLWTESKDVGKGFRC 261
           A+VN       +H + Q     +HP ++ P       NP   D   L+   +++G GF  
Sbjct: 364 AVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSE 423

Query: 262 IRMVNNTRLGFDALNGDKDHG 324
           +    +    FDA    KD G
Sbjct: 424 LNDAEDQAARFDAQVAAKDAG 444

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 147  QALHRPVPPREAGAVQPGVRG-RVGAVDGEQGR 242
            Q   RPVPPR+ G++ P + G RVG   G +GR
Sbjct: 1430 QTSARPVPPRDRGSL-PVIEGTRVGQEPGGRGR 1461

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 280  TRLGFDALNGDKDHGGVHDGTTVVLWEWCKGD 375
            TR  F+    D   GG H G+T+ LWE  + D
Sbjct: 3700 TRRAFEETQIDIPGGGSHGGSTMSLWEVMQSD 3731

>VL2_HPV45 (P36761) Minor capsid protein L2|
          Length = 463

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
 Frame = -3

Query: 389 FQHWLSPLHHSQSTTVVP--SCTPPWSLSPLRASKPRRVLLTMRMQRKPL--PTSLLSVH 222
           F H +SP+  ++   + P  S T    L  + A  P     T     K    P   L++ 
Sbjct: 319 FYHDISPIAATEEIELQPLISATNDSDLFDVYADFPPPASTTPSTIHKSFTYPKYSLTMP 378

Query: 221 STDASSYAGLNGTSFTGWDWPMECLTARPVALLTSAKAGMPSSSLT 84
           ST ASSY+ +     + WD P   +   P  +L S     PS+S T
Sbjct: 379 STAASSYSNVTVPLTSAWDVP---IYTGPDIILPSHTPMWPSTSPT 421

>BAB2_DROME (Q9W0K4) Protein bric-a-brac 2|
          Length = 1067

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -3

Query: 206 SYAGLNGTSFTGWDWPMECLTARPVALLTSAKAGMPSSSLTVVLKRMSLSQ 54
           +Y G  GT+  G+        A   A L    AG P SS+T  L+R  LSQ
Sbjct: 751 TYIG-GGTTTNGYHSAAAAKLAAQNAALAPPDAGSPLSSMTETLRRQILSQ 800

>BMP4_DAMDA (Q29607) Bone morphogenetic protein 4 precursor (BMP-4)|
          Length = 408

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 60  QGHALQHHRQGRRG--HAGLRARQQGHRPRRQALH 158
           +GHAL  HR+ +R   H   RAR++    RR +L+
Sbjct: 280 RGHALTRHRRAKRSPKHHPQRARKKNKNCRRHSLY 314

>AXN2_BRARE (P57095) Axin-2 (Axis inhibition protein 2)|
          Length = 812

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 19  LAPVNPKDETQHWLKDMRFSTTVKDEEGM 105
           LA + PKD  +  + D+R ST  +DE+G+
Sbjct: 37  LAMMRPKDPVKTIMADLRCSTARRDEDGL 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,005,476
Number of Sequences: 219361
Number of extensions: 824230
Number of successful extensions: 3673
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3670
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)