ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZAN_MOUSE (O88799) Zonadhesin precursor 29 4.1
2WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7... 29 5.4
3CEG1A_DROME (Q9NGC3) Centaurin-gamma 1A 28 7.1
4FHUA_ECOLI (P06971) Ferrichrome-iron receptor precursor (Ferric ... 28 7.1

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 146  GHCRGGSKKMPGAS*S*CYCDP 81
            GHC G S K P A    C C+P
Sbjct: 2842 GHCEGSSTKAPSACKEGCVCEP 2863



 Score = 28.9 bits (63), Expect = 5.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 152  SGGHCRGGSKKMPGAS*S*CYCDP 81
            S GHC G + K P A    C C+P
Sbjct: 2960 SEGHCEGSTTKAPSACQEGCVCEP 2983



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>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
 Frame = +3

Query: 6    LSGAKPEETLVTPHT-------LSSDQPQAHNRVTVALASASS------GHFLASTTA 140
            LS + PE TLV P         +SSD P++ ++ T + A + +      G F  +TTA
Sbjct: 1895 LSSSSPESTLVKPEPNGITIPGISSDVPESAHKTTASEAKSDTGQPTKVGRFQVTTTA 1952



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>CEG1A_DROME (Q9NGC3) Centaurin-gamma 1A|
          Length = 995

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 6   LSGAKPEET---LVTPHTLSSDQPQAHNRVTVALASASSGHFLASTTAMATADV 158
           LS   P++    L  PH      PQ HN      A+++SG   +S +A A+A +
Sbjct: 13  LSHPHPQQVHNQLQNPHQNQLPPPQRHNHAAPTAAASASGAPSSSASASASASI 66



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>FHUA_ECOLI (P06971) Ferrichrome-iron receptor precursor (Ferric hydroxamate|
           uptake) (Ferric hydroxamate receptor)
          Length = 747

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 18  KPEETLVTPHTLSSDQPQAHNRVTVALASASSGHFLASTTAMATADVQN 164
           K  +  V  + + SD   A+++   ALA A  GH+LA    +    +QN
Sbjct: 339 KTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQN 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,929,509
Number of Sequences: 219361
Number of extensions: 413523
Number of successful extensions: 1042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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