ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
2dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
3dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
4dbj|AK109370.2| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
5dbj|AK102112.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
6gb|BT018817.1| Zea mays clone EL01N0531H05.d mRNA sequence 133 5e-28
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
8emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 86 1e-13
9gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
10gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
12dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
14gb|U23466.1|HHU23466 Human herpesvirus 6 gp105 gene, exon 3, par... 44 0.37
15ref|NM_184497.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.4
18dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19ref|XM_310498.2| Anopheles gambiae str. PEST ENSANGP00000007356 ... 42 1.4
20dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.4
21ref|XM_469926.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
22ref|XM_368845.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 5.7
23gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.7
24gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence 40 5.7
25ref|XM_953091.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
26ref|XM_327694.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.7
28gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome... 40 5.7
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.7
30emb|X52961.1|ACHUPSL Azobacter chrococcum hupS and hupL genes fo... 40 5.7
31gb|DQ118573.1| Isochrysis galbana isolate 385 chloroplast light ... 40 5.7
32gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.7
33gb|AC023729.5| Drosophila melanogaster X BAC RP98-39L4 (Roswell ... 40 5.7
34gb|AC023719.4| Drosophila melanogaster X BAC RP98-4L24 (Roswell ... 40 5.7
35gb|AE012435.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.7
36ref|NM_132288.1| Drosophila melanogaster CG15365-RA (CG15365), mRNA 40 5.7
37gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosom... 40 5.7
38gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.7
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
42gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 40 5.7
43dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 5.7
44dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
45dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
46dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
47dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
48dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
49gb|AE003446.4| Drosophila melanogaster chromosome X, section 30 ... 40 5.7
50gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.7
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
52emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.7 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  161 bits (81), Expect = 2e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                           
Query: 315     ccgcggcgggggcggcgatggcgggtccacctgcgccgagtcccgcgactgctacctctc 374
               ||||||||| |||||||| |||||  ||||  ||||||||||||||||||||||||||||
Sbjct: 4201040 ccgcggcggtggcggcgacggcggcgccacgggcgccgagtcccgcgactgctacctctc 4200981

                                                            
Query: 375     catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 419
               |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4200980 catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 4200936



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 107     gggccgtggtcctccgcctcgacgacctgtcccttccgtcgcg 149
               |||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 4201257 gggcggtggtgctccgcctcgacgacctctcccttccgccgcg 4201215



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 221     tctacctcaccaccgacggccgcccgctc 249
               ||||||||||| |||| ||||||||||||
Sbjct: 4201134 tctacctcaccgccgatggccgcccgctc 4201106



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 225      cctcaccaccgacggccgcc 244
                ||||||||||||||||||||
Sbjct: 23998138 cctcaccaccgacggccgcc 23998119



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 76      ccagccatggcgcccgccgc 95
               ||||||||||||||||||||
Sbjct: 8431607 ccagccatggcgcccgccgc 8431588
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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score =  161 bits (81), Expect = 2e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                         
Query: 315   ccgcggcgggggcggcgatggcgggtccacctgcgccgagtcccgcgactgctacctctc 374
             ||||||||| |||||||| |||||  ||||  ||||||||||||||||||||||||||||
Sbjct: 46261 ccgcggcggtggcggcgacggcggcgccacgggcgccgagtcccgcgactgctacctctc 46202

                                                          
Query: 375   catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 419
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46201 catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 46157



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 107   gggccgtggtcctccgcctcgacgacctgtcccttccgtcgcg 149
             |||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 46478 gggcggtggtgctccgcctcgacgacctctcccttccgccgcg 46436



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 221   tctacctcaccaccgacggccgcccgctc 249
             ||||||||||| |||| ||||||||||||
Sbjct: 46355 tctacctcaccgccgatggccgcccgctc 46327
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>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0036B04
          Length = 136159

 Score =  161 bits (81), Expect = 2e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                          
Query: 315    ccgcggcgggggcggcgatggcgggtccacctgcgccgagtcccgcgactgctacctctc 374
              ||||||||| |||||||| |||||  ||||  ||||||||||||||||||||||||||||
Sbjct: 134299 ccgcggcggtggcggcgacggcggcgccacgggcgccgagtcccgcgactgctacctctc 134240

                                                           
Query: 375    catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 419
              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134239 catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 134195



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 107    gggccgtggtcctccgcctcgacgacctgtcccttccgtcgcg 149
              |||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 134516 gggcggtggtgctccgcctcgacgacctctcccttccgccgcg 134474



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 221    tctacctcaccaccgacggccgcccgctc 249
              ||||||||||| |||| ||||||||||||
Sbjct: 134393 tctacctcaccgccgatggccgcccgctc 134365
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>dbj|AK109370.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D12, full
           insert sequence
          Length = 1403

 Score =  161 bits (81), Expect = 2e-36
 Identities = 99/105 (94%)
 Strand = Plus / Plus

                                                                       
Query: 315 ccgcggcgggggcggcgatggcgggtccacctgcgccgagtcccgcgactgctacctctc 374
           ||||||||| |||||||| |||||  ||||  ||||||||||||||||||||||||||||
Sbjct: 341 ccgcggcggtggcggcgacggcggcgccacgggcgccgagtcccgcgactgctacctctc 400

                                                        
Query: 375 catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 419
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 445



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 107 gggccgtggtcctccgcctcgacgacctgtcccttccgtcgcg 149
           |||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 124 gggcggtggtgctccgcctcgacgacctctcccttccgccgcg 166



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 221 tctacctcaccaccgacggccgcccgctc 249
           ||||||||||| |||| ||||||||||||
Sbjct: 247 tctacctcaccgccgatggccgcccgctc 275
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>dbj|AK102112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084G03, full
           insert sequence
          Length = 1473

 Score =  161 bits (81), Expect = 2e-36
 Identities = 99/105 (94%)
 Strand = Plus / Plus

                                                                       
Query: 315 ccgcggcgggggcggcgatggcgggtccacctgcgccgagtcccgcgactgctacctctc 374
           ||||||||| |||||||| |||||  ||||  ||||||||||||||||||||||||||||
Sbjct: 336 ccgcggcggtggcggcgacggcggcgccacgggcgccgagtcccgcgactgctacctctc 395

                                                        
Query: 375 catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 419
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 catgtacctcgcgaagaagcccgacaaggccgaccccaacgaggc 440



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 107 gggccgtggtcctccgcctcgacgacctgtcccttccgtcgcg 149
           |||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 119 gggcggtggtgctccgcctcgacgacctctcccttccgccgcg 161



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 221 tctacctcaccaccgacggccgcccgctc 249
           ||||||||||| |||| ||||||||||||
Sbjct: 242 tctacctcaccgccgatggccgcccgctc 270
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>gb|BT018817.1| Zea mays clone EL01N0531H05.d mRNA sequence
          Length = 1344

 Score =  133 bits (67), Expect = 5e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                       
Query: 319 ggcgggggcggcgatggcgggtccacctgcgccgagtcccgcgactgctacctctccatg 378
           ||||| |||||||| |||||  ||||  ||||||||||||||||||||||||||||||||
Sbjct: 325 ggcggcggcggcgacggcggcgccacgggcgccgagtcccgcgactgctacctctccatg 384

                                                          
Query: 379 tacctcgcgaagaagcccgacaaggccgaccccaacgaggcccgcct 425
           |||||||| ||||||||| ||||||| |||||||||||||| |||||
Sbjct: 385 tacctcgccaagaagccccacaaggcggaccccaacgaggcgcgcct 431



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 107 gggccgtggtcctccgcctcgacgacctgtcccttccgtcgcggtacctcaccgtc 162
           ||||||| || |||||||| ||||||||| | || ||  ||||| |||||||||||
Sbjct: 110 gggccgtcgtgctccgcctggacgacctggcgctgcccccgcggcacctcaccgtc 165
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 353      agtcccgcgactgctacctctccatgtacctcgcgaagaagcccgacaaggccgacccca 412
                ||||| |||||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 22324939 agtccggcgactgctaactctccatctacctcgcgaataagcccgacaaggcggacccca 22324880

                       
Query: 413      acgaggc 419
                || ||||
Sbjct: 22324879 acaaggc 22324873



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 315      ccgcggcgggggcggcgatggcggg 339
                ||||||||||||||||| |||||||
Sbjct: 20147409 ccgcggcgggggcggcggtggcggg 20147433
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                         
Query: 353   agtcccgcgactgctacctctccatgtacctcgcgaagaagcccgacaaggccgacccca 412
             ||||| |||||||||| |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 75843 agtccggcgactgctaactctccatctacctcgcgaataagcccgacaaggcggacccca 75784

                    
Query: 413   acgaggc 419
             || ||||
Sbjct: 75783 acaaggc 75777
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>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0026G02, complete sequence
          Length = 123472

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 317    gcggcgggggcggcgatggcgg 338
              ||||||||||||||||||||||
Sbjct: 118241 gcggcgggggcggcgatggcgg 118262
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>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 317   gcggcgggggcggcgatggcgg 338
             ||||||||||||||||||||||
Sbjct: 17158 gcggcgggggcggcgatggcgg 17179
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 317      gcggcgggggcggcgatggcgg 338
                ||||||||||||||||||||||
Sbjct: 22757441 gcggcgggggcggcgatggcgg 22757462
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>dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F12, full
           insert sequence
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 317 gcggcgggggcggcgatggcgg 338
           ||||||||||||||||||||||
Sbjct: 115 gcggcgggggcggcgatggcgg 136
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 317      gcggcgggggcggcgatggcgg 338
                ||||||||||||||||||||||
Sbjct: 23067351 gcggcgggggcggcgatggcgg 23067372
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>gb|U23466.1|HHU23466 Human herpesvirus 6 gp105 gene, exon 3, partial cds
          Length = 2109

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 49  aaccctagctctagccctagcc 70
           ||||||||||||||||||||||
Sbjct: 343 aaccctagctctagccctagcc 322



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 49  aaccctagctctagccctagcc 70
           ||||||||||||||||||||||
Sbjct: 133 aaccctagctctagccctagcc 112
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>ref|NM_184497.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 576

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 317 gcggcgggggcggcgatggcg 337
           |||||||||||||||||||||
Sbjct: 109 gcggcgggggcggcgatggcg 89
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 317     gcggcgggggcggcgatggcg 337
               |||||||||||||||||||||
Sbjct: 3305786 gcggcgggggcggcgatggcg 3305806
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 87      gcccgccgccggcgcgacccgggccgtgg 115
               ||||||||||||||||  |||||||||||
Sbjct: 3020114 gcccgccgccggcgcgggccgggccgtgg 3020086



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     ggcgcccgccgccggcgcga 103
              ||||||||||||||||||||
Sbjct: 461765 ggcgcccgccgccggcgcga 461784
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>dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1189A09
          Length = 167761

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 317    gcggcgggggcggcgatggcg 337
              |||||||||||||||||||||
Sbjct: 123415 gcggcgggggcggcgatggcg 123435
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>ref|XM_310498.2| Anopheles gambiae str. PEST ENSANGP00000007356 (ENSANGG00000005550),
            partial mRNA
          Length = 4149

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 92   ccgccggcgcgacccgggccgtggt 116
            |||||||| ||||||||||||||||
Sbjct: 3710 ccgccggcacgacccgggccgtggt 3734
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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
              complete sequence
          Length = 123078

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 347    gcgccgagtcccgcgactgctacct 371
              ||||||||||||||||| |||||||
Sbjct: 107519 gcgccgagtcccgcgacggctacct 107543
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>ref|XM_469926.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  gcggcgggggcggcgatggc 336
            ||||||||||||||||||||
Sbjct: 1687 gcggcgggggcggcgatggc 1706
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>ref|XM_368845.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00399.4) partial mRNA
          Length = 1311

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 aggccgaccccaacgaggcccgcc 424
           |||||||||||||||| |||||||
Sbjct: 281 aggccgaccccaacgacgcccgcc 304
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 402     ggccgaccccaacgaggccc 421
               ||||||||||||||||||||
Sbjct: 2126914 ggccgaccccaacgaggccc 2126895
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>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence
          Length = 103167

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    gccatggcgcccgccgccggcgcg 102
             ||||| ||||||||||||||||||
Sbjct: 48030 gccatcgcgcccgccgccggcgcg 48053
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>ref|XM_953091.1| Neurospora crassa OR74A hypothetical protein (NCU07409.1) partial
           mRNA
          Length = 1704

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tacctcaccaccgacggccg 242
           ||||||||||||||||||||
Sbjct: 439 tacctcaccaccgacggccg 458
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>ref|XM_327694.1| Neurospora crassa OR74A hypothetical protein (NCU07409.1) partial
           mRNA
          Length = 1704

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 tacctcaccaccgacggccg 242
           ||||||||||||||||||||
Sbjct: 439 tacctcaccaccgacggccg 458
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      gcggcgggggcggcgatggc 336
                ||||||||||||||||||||
Sbjct: 32524507 gcggcgggggcggcgatggc 32524488
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>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence
          Length = 236917

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    ccctagctctagccctagcc 70
             ||||||||||||||||||||
Sbjct: 55043 ccctagctctagccctagcc 55024
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     tctacctcaccaccgacggc 240
               ||||||||||||||||||||
Sbjct: 4581977 tctacctcaccaccgacggc 4581996
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>emb|X52961.1|ACHUPSL Azobacter chrococcum hupS and hupL genes for small and large subunits
            of H2-uptake hydrogenase
          Length = 3340

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 315  ccgcggcgggggcggcgatggcgg 338
            |||||||| |||||||||||||||
Sbjct: 1245 ccgcggcgtgggcggcgatggcgg 1222
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>gb|DQ118573.1| Isochrysis galbana isolate 385 chloroplast light harvesting protein
           isoform 1 mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 755

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 381 cctcgcgaagaagcccgacaaggc 404
           ||||||| ||||||||||||||||
Sbjct: 404 cctcgcgcagaagcccgacaaggc 427
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 89      ccgccgccggcgcgacccgggccg 112
               |||||||||||||| |||||||||
Sbjct: 3612451 ccgccgccggcgcgccccgggccg 3612428
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>gb|AC023729.5| Drosophila melanogaster X BAC RP98-39L4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 182635

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   gcggcgggggcggcgatggc 336
             ||||||||||||||||||||
Sbjct: 19656 gcggcgggggcggcgatggc 19637
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>gb|AC023719.4| Drosophila melanogaster X BAC RP98-4L24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 187230

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    gcggcgggggcggcgatggc 336
              ||||||||||||||||||||
Sbjct: 100380 gcggcgggggcggcgatggc 100399
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>gb|AE012435.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 343
            of 460 of the complete genome
          Length = 11282

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   caccagccatggcgcccgcc 93
            ||||||||||||||||||||
Sbjct: 4207 caccagccatggcgcccgcc 4188
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>ref|NM_132288.1| Drosophila melanogaster CG15365-RA (CG15365), mRNA
          Length = 2466

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 gcggcgggggcggcgatggc 336
           ||||||||||||||||||||
Sbjct: 443 gcggcgggggcggcgatggc 462
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>gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosome 14, complete
             sequence
          Length = 195224

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ccctagctctagccctagcc 70
             ||||||||||||||||||||
Sbjct: 68276 ccctagctctagccctagcc 68295
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      caccagccatggcgcccgcc 93
               ||||||||||||||||||||
Sbjct: 1178106 caccagccatggcgcccgcc 1178125
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 315      ccgcggcgggggcggcgatggcgg 338
                ||||||||| ||||||||||||||
Sbjct: 24757845 ccgcggcggcggcggcgatggcgg 24757868
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 316      cgcggcgggggcggcgatggcggg 339
                |||||||| |||||||||||||||
Sbjct: 27512365 cgcggcggcggcggcgatggcggg 27512342
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      gcggcgggggcggcgatggc 336
                ||||||||||||||||||||
Sbjct: 32615017 gcggcgggggcggcgatggc 32614998
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>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   gcggcgggggcggcgatggc 336
             ||||||||||||||||||||
Sbjct: 57956 gcggcgggggcggcgatggc 57937
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 319     ggcgggggcggcgatggcgg 338
               ||||||||||||||||||||
Sbjct: 1511850 ggcgggggcggcgatggcgg 1511831
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>dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0092H22
          Length = 165194

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    ccagccatggcgcccgccgc 95
             ||||||||||||||||||||
Sbjct: 46308 ccagccatggcgcccgccgc 46289
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>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0490F09
          Length = 149542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    cctcaccaccgacggccgcc 244
              ||||||||||||||||||||
Sbjct: 127749 cctcaccaccgacggccgcc 127730
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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0429G06
          Length = 158321

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  cctcaccaccgacggccgcc 244
            ||||||||||||||||||||
Sbjct: 7831 cctcaccaccgacggccgcc 7812
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>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1112_E06
          Length = 95069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 316   cgcggcgggggcggcgatggcggg 339
             |||||||| |||||||||||||||
Sbjct: 75614 cgcggcggcggcggcgatggcggg 75591
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>dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E08, full
            insert sequence
          Length = 1456

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  cctcaccaccgacggccgcc 244
            ||||||||||||||||||||
Sbjct: 1078 cctcaccaccgacggccgcc 1059
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>gb|AE003446.4| Drosophila melanogaster chromosome X, section 30 of 74 of the
            complete sequence
          Length = 290970

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  gcggcgggggcggcgatggc 336
            ||||||||||||||||||||
Sbjct: 8597 gcggcgggggcggcgatggc 8578
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 316     cgcggcgggggcggcgatgg 335
               ||||||||||||||||||||
Sbjct: 1055423 cgcggcgggggcggcgatgg 1055404
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 315      ccgcggcgggggcggcgatggcgg 338
                ||||||||| ||||||||||||||
Sbjct: 24686051 ccgcggcggcggcggcgatggcgg 24686074
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>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 140383

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 315   ccgcggcgggggcggcgatggcgg 338
             ||||||||| ||||||||||||||
Sbjct: 65002 ccgcggcggcggcggcgatggcgg 65025


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,505,665
Number of Sequences: 3902068
Number of extensions: 1505665
Number of successful extensions: 45117
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43587
Number of HSP's gapped (non-prelim): 1530
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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