ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast57e08 |
|---|---|
| Clone Library Name | barley_pub |
>WA22_MYCTU (P0A686) WAG22 antigen precursor| Length = 914 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = -2 Query: 290 TGGIPGTTGAVTVPVIGGSNGRSGTGSPATGA 195 TGG GT GA + GG+ G GTGS A GA Sbjct: 658 TGGAGGTGGAAGLFANGGAGGAGGTGSTAGGA 689
>WA22_MYCBO (P0A687) WAG22 antigen precursor| Length = 914 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = -2 Query: 290 TGGIPGTTGAVTVPVIGGSNGRSGTGSPATGA 195 TGG GT GA + GG+ G GTGS A GA Sbjct: 658 TGGAGGTGGAAGLFANGGAGGAGGTGSTAGGA 689
>PG34_MYCTU (Q50594) Hypothetical PE-PGRS family protein PE_PGRS34| Length = 515 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -2 Query: 290 TGGIPGTTGAVTVPVIGGSNGRSGTGSPATG 198 TGG GT G + GG+ G SG G+P TG Sbjct: 443 TGGNGGTAGLIGNGGNGGAAGVSGDGTPGTG 473
>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor| Length = 1901 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -2 Query: 290 TGGIPGTTGAVTVPVIGGSNGRSGTGSPATGA 195 TGG+ G G + GG G G GS T A Sbjct: 490 TGGVVGAAGKAGIGGTGGQGGAGGAGSAGTDA 521 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -2 Query: 290 TGGIPGTTGAVTVPVIGGSNGRSGTGSPATG 198 TGG+ G TG+ + GG G G G+ G Sbjct: 781 TGGVVGATGSAGIGGAGGRGGDGGDGASGLG 811
>ONEC2_MOUSE (Q6XBJ3) One cut domain family member 2 (Transcription factor| ONECUT-2) (OC-2) Length = 486 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +2 Query: 278 GSLRFANPPPPTSLHDHLSTYGVRAGLHA-S*SPTTRGSRLAASTYRPE 421 GSLR PPPPT+ H L T A + S T+ S L S YRPE Sbjct: 57 GSLR--GPPPPTA-HQELGTAAAAAAAASRSAMVTSMASILDGSDYRPE 102
>PP71_HCMVA (P06726) 71 kDa upper matrix phosphoprotein (PP71) (Tegument| protein UL82) Length = 559 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = +2 Query: 239 HRLPAPSLPRWFLGSLRFANPPPPTSLHDHLSTYGVRAGLHAS*SPTTRGSRL 397 H+ +W + L +P PPTS+ H S Y RA + A +P RL Sbjct: 226 HKTETDERGQWIMLFLHHDSPHPPTSVFLHFSVYTHRAEVVARHNPYPHLRRL 278
>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25| Length = 561 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Frame = +2 Query: 323 DHLSTYGVRAG--LHAS*SPTTRGSRLAASTYRPE---ENHRRFAQ 445 D S++G RA S SP TR R ++YRPE E+ +RFAQ Sbjct: 385 DGNSSHGYRADNEFSPSRSPVTRSHRDKRNSYRPEYKDEDDKRFAQ 430
>GCB_RAT (P20761) Ig gamma-2B chain C region| Length = 333 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +2 Query: 209 GCRCPTSRCCHRLPAPSLPRWFLGSLRFANPPPPTSL 319 G +CPT CH+ P P L G F PP P + Sbjct: 103 GHKCPTCPTCHKCPVPEL---LGGPSVFIFPPKPKDI 136
>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor| Length = 680 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 284 GIPGTTGAVTVPVIGGSNGRSGTGSP 207 G PG GA P + G G +G GSP Sbjct: 171 GFPGEKGAQGAPGVNGRKGETGYGSP 196
>ELN_CHICK (P07916) Elastin precursor (Tropoelastin) (Fragment)| Length = 750 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Frame = -2 Query: 287 GGIPGTTGAV-----TVPVIGGSNGRSGTGSPATGA 195 GG+PG V VP +GG G +G G+PA A Sbjct: 314 GGVPGVVPGVGVVPGLVPGVGGIPGVAGVGTPAGAA 349
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +1 Query: 256 VTAPVVPGIPPVRKSTAANKSP*SSIYLW 342 VTAP P +PP + NK+P +Y + Sbjct: 122 VTAPGTPALPPTEEIWVENKTPDGKVYYY 150
>GSTF2_WHEAT (P30111) Glutathione S-transferase 2 (EC 2.5.1.18) (GST class-phi)| Length = 291 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%) Frame = +3 Query: 12 DTATQESRPPPHQW----PATQNLPYQ 80 D TQE RPP W P+T ++P+Q Sbjct: 245 DDPTQEKRPPSRGWVIICPSTSSIPFQ 271
>CO0XX_PONPY (Q5R9Q6) Protein C15orf0?? homolog| Length = 118 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 12/53 (22%) Frame = -1 Query: 321 WRLVGGGGFANR----RDPRNHRG--------SDGAGNRWQQREVGHRQPGHR 199 W GG NR +D R RG SD N+W R G+ P HR Sbjct: 43 WNSRAGGNQRNRGNRLQDNRQFRGRDNRWGWPSDNRSNQWHGRSWGNNYPQHR 95
>CO0XX_HUMAN (Q9BTL3) Protein C15orf0??| Length = 118 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 12/53 (22%) Frame = -1 Query: 321 WRLVGGGGFANR----RDPRNHRG--------SDGAGNRWQQREVGHRQPGHR 199 W GG NR +D R RG SD N+W R G+ P HR Sbjct: 43 WNSRAGGNQRNRGNRLQDNRQFRGRDNRWGWPSDNRSNQWHGRSWGNNYPQHR 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,974,102 Number of Sequences: 219361 Number of extensions: 1147733 Number of successful extensions: 4236 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4221 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
