>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +1

Query: 331 GDAGYTAEPPEEAKVYVGNLPYDVDSERL 417
           G  G++ EPPEEAK++VGNLPYDVDSE+L
Sbjct: 44  GGQGFS-EPPEEAKLFVGNLPYDVDSEKL 71



 Score = 32.0 bits (71), Expect = 0.61
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLGQ 423
           +VYVGNLP+DVD+ RL Q
Sbjct: 150 RVYVGNLPWDVDTSRLEQ 167

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 3/34 (8%)
 Frame = +1

Query: 331 GDAGYTAE---PPEEAKVYVGNLPYDVDSERLGQ 423
           G+AG T E   P E+AK++VGNLPYD+DSE L Q
Sbjct: 82  GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQ 115



 Score = 29.6 bits (65), Expect = 3.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLGQ 423
           ++YVGN+P+D+D  RL Q
Sbjct: 192 RIYVGNIPWDIDDARLEQ 209

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = +1

Query: 352 EPPEEAKVYVGNLPYDVDSERLGQ 423
           EPPE+AK++VGNLPYDVDSE L +
Sbjct: 131 EPPEDAKLFVGNLPYDVDSEGLAR 154

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 35.4 bits (80), Expect = 0.055
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 352 EPPEEAKVYVGNLPYDVDSERL 417
           EP EEAK++VGNL YDV+S+ L
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQAL 166



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 370 KVYVGNLPYDVDSERLGQ 423
           +VYVGNLP+DVD+ RL Q
Sbjct: 245 RVYVGNLPWDVDNGRLEQ 262

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
 Frame = +1

Query: 355 PPEEA------KVYVGNLPYDVDSERLGQ 423
           PP+E       K++VGNLP++VDS +L Q
Sbjct: 81  PPKEQSFSADLKLFVGNLPFNVDSAQLAQ 109

>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein) (Metastatic lymph node protein 51) (MLN 51
           protein) (Barentsz protein) (Btz)
          Length = 703

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
 Frame = +3

Query: 15  SPARLPPL-------IPFSHHGHLRHDTRHVCGNGGLALPPRVRRPTQARPGVRLPPTHF 173
           SPA LPP        +   H G   H T     N GL  PP    P Q  P   L PT+F
Sbjct: 563 SPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYF 622

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +1

Query: 349 AEPP---EEAKVYVGNLPYDVDSERL 417
           AE P   E+ K++VGNLP+ VDS  L
Sbjct: 78  AEQPRFSEDLKLFVGNLPFSVDSAAL 103

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 325 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERL 417
           SG +AG    PP    VY+G++PYD   E++
Sbjct: 5   SGVNAGVQNNPPSRV-VYLGSIPYDQTEEQI 34

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +1

Query: 349 AEPP---EEAKVYVGNLPYDVDSERL 417
           AE P   E+ K++VGNLP+ VDS  L
Sbjct: 79  AEQPRFSEDLKLFVGNLPFSVDSAAL 104

>SAT_RIFPS (Q54506) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate|
           adenylate transferase) (SAT) (ATP-sulfurylase)
          Length = 437

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 48  SHHGHLR----HDTRHVCGNGGLALPPRVRRPTQARPGVRLPPTH 170
           SH G LR    H  R + G G +A PP   RP  A+  + L P H
Sbjct: 348 SHQGRLRTALRHQGREMLGQG-IAPPPEFSRPEVAKILMDLLPVH 391


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,022,053
Number of Sequences: 219361
Number of extensions: 458243
Number of successful extensions: 1443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)