>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein|
           15)
          Length = 735

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 167 ICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIR 39
           +CT  S RA      GF P    SPSFG     S   P Q ++
Sbjct: 159 VCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQ 201

>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
           protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 170 TICTSVSLRASTRVSSGFAPLRHSSPSFGSRQ--ACSNSNPS 51
           ++  ++S + S   S G  PL H SP+F SRQ  A +++NP+
Sbjct: 172 SLSAALSQQRSLSSSFGHTPLLHPSPTFASRQQGALTSANPA 213

>WDR43_HUMAN (Q15061) WD-repeat protein 43|
          Length = 720

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 158 SVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQKIRVGQRCGP*GP 9
           ++ LR    V  G AP R  +P+ G  + CS +  +     G  C P  P
Sbjct: 8   ALQLRDCACVGEGAAPPRAGAPAHGRTRGCSGARAAMAAGGGGSCDPLAP 57

>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
 Frame = -2

Query: 388  HPIPWHGSPKQPSHPTYLKFENRSRTLRPQCL*SLALPDRTRNGLQLS*GKLRREPAT-- 215
            HP+  HGSP +  +P  L   +    +   C   +      R  L    G    E  +  
Sbjct: 1105 HPLEMHGSPSKKENPCQLCNSSGLTYISVHCPKGITDVFNRRGPLPAYLGSNTSESTSIL 1164

Query: 214  -RWFD*SFAPIPKSDERFARQYRFEPPPEFPLASPRSGIVHHLSGPDRRAPTRTLHRRSG 38
              W   S  PI K   R      +  PPE PL++     +  L+G D  +      +R+G
Sbjct: 1165 QPWEKESKIPIIKRATRLRDAISWFIPPESPLSTCILNNIRALTGEDWSSKQHGF-KRTG 1223

Query: 37   SA 32
            SA
Sbjct: 1224 SA 1225

>MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA polymerase II|
           transcription subunit 4)
          Length = 270

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 240 GNFGGNQLLDGSIS--LSPLYPSQTNDLHVSIASSLHQSFLWLRP 112
           G+  G+ L  G +   L+P YP Q+ND+ V++    H S   L P
Sbjct: 200 GHLPGDALAAGRLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEP 244

>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 64  LEHACRDPKDGELCLSGAKPEETLVEARSDTDVQIV 171
           +E  C D  + +LC   A+ +ETL+  RSD+ ++++
Sbjct: 80  IETFCTDANEKQLCREIAQGDETLIVQRSDSFMKLL 115

>OM3_CHLPN (Q9Z7Z5) Cysteine-rich outer membrane protein 3 precursor (9|
           kDa-cysteine-rich lipoprotein) (9KD-CRP)
          Length = 90

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 357 CFGEPCHGIGCSKWAIFGKQNWRCGMNRKPGYGAHCALP 473
           CF +PC    C+   +  K+   CG N    Y   C+ P
Sbjct: 27  CFEDPCAPSSCNPCEVIRKKERSCGGNACGSYVPSCSNP 65

>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 521

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -2

Query: 163 ARQYRFEPPPEFPLASPRSGIVHHLSGPDRRAPTRTLHRRSGSASGAAREGL 8
           A Q +  PPP  P   P   I+   +GPD +AP       SG    A   GL
Sbjct: 398 ALQAKGAPPPPPPPPPPAEDILAFYAGPDEKAP----QEASGDGEAAGVLGL 445


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,587,541
Number of Sequences: 219361
Number of extensions: 1722537
Number of successful extensions: 4655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4653
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)