Clone Information

BLAST Search Result

Clone Name	bast57c12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein	34	0.16
2	NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)	33	0.28
3	KCT2_MOUSE (Q8K201) Keratinocytes-associated transmembrane prote...	33	0.36
4	MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 ...	32	0.62
5	RAD2_YEAST (P07276) DNA-repair protein RAD2	32	0.62
6	CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)	32	0.62
7	MEN1_HUMAN (O00255) Menin	32	0.80
8	VGLB_HSVA1 (Q04463) Glycoprotein B precursor	31	1.4
9	CDN1A_HUMAN (P38936) Cyclin-dependent kinase inhibitor 1 (p21) (...	31	1.4
10	MEN1_MOUSE (O88559) Menin	31	1.8
11	ACL1_NEUCR (Q8X097) Probable ATP-citrate synthase subunit 1 (EC ...	30	2.3
12	MA2B1_MACFA (Q60HE9) Lysosomal alpha-mannosidase precursor (EC 3...	30	2.3
13	MA2B1_HUMAN (O00754) Lysosomal alpha-mannosidase precursor (EC 3...	30	2.3
14	FARP1_HUMAN (Q9Y4F1) FERM, RhoGEF and pleckstrin domain-containi...	30	2.3
15	ALL5_HEVBR (Q39967) Major latex allergen Hev b 5	30	2.3
16	TAPB_AERHY (P45792) Type IV pilus assembly protein tapB	30	3.1
17	NOG2_CRYGA (Q6TGJ8) Nucleolar GTP-binding protein 2	30	3.1
18	CXA12_RAT (Q80XF7) Gap junction alpha-12 protein (Connexin-47) (...	30	3.1
19	WBS14_MOUSE (Q99MZ3) Williams-Beuren syndrome chromosome region ...	30	3.1
20	OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (...	30	3.1
21	HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated...	30	3.1
22	POK_DROME (Q01842) Ets DNA-binding protein pokkuri (Protein yan)...	27	3.1
23	SIPA1_HUMAN (Q96FS4) Signal-induced proliferation-associated pro...	30	4.0
24	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	30	4.0
25	GLYM_FLAPR (P49357) Serine hydroxymethyltransferase 1, mitochond...	30	4.0
26	AGRP_PIG (Q9TU18) Agouti-related protein precursor	29	5.2
27	SYP2L_MOUSE (Q8BWB1) Synaptopodin 2-like protein	29	5.2
28	CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96	29	5.2
29	A4_RAT (P08592) Amyloid beta A4 protein precursor (APP) (ABPP) (...	29	5.2
30	MOVP_AMVYS (P24265) Movement protein (MP) (Protein 3A)	29	5.2
31	MOVP_AMVMA (P05672) Movement protein (MP) (Protein 3A)	29	5.2
32	MOVP_AMVLE (P03595) Movement protein (MP) (Protein 3A)	29	5.2
33	MRP_RABIT (P35566) MARCKS-related protein (MARCKS-like protein 1...	29	5.2
34	FARP1_PONPY (Q5RAB8) FERM, RhoGEF and pleckstrin domain-containi...	29	5.2
35	ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 pre...	26	6.2
36	KPCD3_HUMAN (O94806) Serine/threonine-protein kinase D3 (EC 2.7....	29	6.8
37	MYOC_DICDI (P42522) Myosin IC heavy chain	29	6.8
38	CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96	29	6.8
39	KPCD3_MOUSE (Q8K1Y2) Serine/threonine-protein kinase D3 (EC 2.7....	29	6.8
40	VPRT_HTL1C (P14074) Protease (EC 3.4.23.-)	28	8.9
41	CXA12_MOUSE (Q8BQU6) Gap junction alpha-12 protein (Connexin-47)...	28	8.9
42	E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ET...	28	8.9
43	IF2_THIDA (Q3SKX1) Translation initiation factor IF-2	28	8.9
44	SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (...	28	8.9
45	GLYN_FLAPR (P49358) Serine hydroxymethyltransferase 2, mitochond...	28	8.9
46	RPOC_SILPO (Q5LMQ6) DNA-directed RNA polymerase beta' chain (EC ...	28	8.9
47	NPAS2_MOUSE (P97460) Neuronal PAS domain protein 2 (Neuronal PAS2)	28	8.9

>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 283  QAPGAETDYVESGEYVQDDPEPFQAEDITGTGTPEAEDPDGTQLAWQYDEETD 441
            +AP AE D  E+    Q + E  +A +  G   PE+ED +  +  W+   E++
Sbjct: 1932 EAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESE 1984

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>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 1000

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
 Frame = +2

Query: 95  AAPRAPFPALGPRGATP-PVELVLVNGANRASP-SLLQSTAEELLQ--RLLPRSGFLSVG 262
           A PRAP P+  PR A   P    L   A+  SP   L S  E LL   +L P S   S  
Sbjct: 22  APPRAPPPS--PRSARRRPFPAALPGAASARSPREALLSLRERLLLFLQLFPASSRFSSS 79

Query: 263 SAPPLRPKHRERRPITW--SQESTCRT-----IQNHSKLRISQVQV 379
           S+    P     RP+ W  S+ +TC       +++    RI +V+V
Sbjct: 80  SSTVACPGRGRARPVCWKRSEMATCAVEVFGLLEDEENSRIVRVRV 125

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>KCT2_MOUSE (Q8K201) Keratinocytes-associated transmembrane protein 2 precursor|
          Length = 259

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = +1

Query: 193 PASVYGGGTSSASPSPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAEDITG 372
           PAS    G+SSA+P+P           ++P AP  E D  E     ++D     +   TG
Sbjct: 83  PASAEKSGSSSAAPTPT----------AAPSAPEEEADSNEDPSMEEEDLLALNSSPATG 132

Query: 373 TGTPEAED---PDGTQLAWQYDEETDRLYVTIQR 465
             T +  D   PD        DEE + + + I +
Sbjct: 133 KDTLDNGDYGEPDYDWTTNPRDEEPEDINIAISK 166

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>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 23/61 (37%), Positives = 33/61 (54%)
 Frame = +2

Query: 257  VGSAPPLRPKHRERRPITWSQESTCRTIQNHSKLRISQVQVPQRQRIPTAPSWRGSTTRR 436
            V +AP LRP     RP+T   + T RT    S+  +S V+ P+   +PTAP  + ST+  
Sbjct: 1285 VPTAPELRPSTSTDRPVT--PKPTSRT--TRSRTNMSSVKTPETV-VPTAPELQISTSTD 1339

Query: 437  Q 439
            Q
Sbjct: 1340 Q 1340

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>RAD2_YEAST (P07276) DNA-repair protein RAD2|
          Length = 1031

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
 Frame = +2

Query: 80  VRGLGAAPRAPFPALGPRGATPPVELVL-VNGANRASPSLLQSTAEELLQRLLPRS---- 244
           V   G   R P    G  GA P  +    V   N  S S+++ T++ +L    P S    
Sbjct: 475 VTSKGTEARPPIVQYGLLGAQPDSKQPYHVTNLNSKSESVIKRTSKTVLSEFRPPSQQED 534

Query: 245 -GFLSVGSAPPLRPKHRERRPITWSQESTCRTIQNHSKLRISQVQVPQRQRIPTAPSWRG 421
            G +       L     +     ++ E++    Q +++  +SQ    ++  IP  PSW  
Sbjct: 535 KGAILTEGEQNLNFISHKIPQFDFNNENSL-LFQKNTESNVSQEATKEKSPIPEMPSWFS 593

Query: 422 STTRRQI 442
           ST  +Q+
Sbjct: 594 STASQQL 600

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>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 290 GAWGEEGARNRRRGSRTGEGDAEEVPPP*TEAGKET 183
           GA  + GA     G R GEG  E+ P   TE+G ET
Sbjct: 52  GAAAKAGATEEASGGRDGEGAGEQAPDAGTESGGET 87

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>MEN1_HUMAN (O00255) Menin|
          Length = 615

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 305 SVSAPGAWGEEGARNRRRGSRTGEGDAEEVPPP 207
           +  A   WGEE    RRRG R  E   EE PPP
Sbjct: 469 AAEAEEPWGEEAREGRRRGPRR-ESKPEEPPPP 500

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>VGLB_HSVA1 (Q04463) Glycoprotein B precursor|
          Length = 933

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 250 PLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAEDITGTGTPEAEDPD 402
           P  R  A  SP    A  + VE G+Y + D E     D+ G+G PE+  PD
Sbjct: 39  PGPRGPAARSPGLEDASVEPVEDGDYDEYDDEGHTPTDVPGSG-PESPGPD 88

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>CDN1A_HUMAN (P38936) Cyclin-dependent kinase inhibitor 1 (p21) (CDK-interacting|
           protein 1) (Melanoma differentiation-associated protein
           6) (MDA-6)
          Length = 163

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 39/104 (37%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
 Frame = +2

Query: 80  VRGLGAAPRAPFPALGPRGATPPVELVLVNGANR--ASPSLLQSTAEE------LLQRLL 235
           VRGLG  P+   P  GPR     +      G  R   SP+LLQ TAEE      L   L+
Sbjct: 67  VRGLGL-PKLYLPT-GPRRGRDEL-----GGGRRPGTSPALLQGTAEEDHVDLSLSCTLV 119

Query: 236 PRSGFLSVGS-APPLRPKHRERRPITWSQESTCRTIQNHSKLRI 364
           PRSG  + GS   P   + R+RR        T  T   HSK R+
Sbjct: 120 PRSGEQAEGSPGGPGDSQGRKRR-------QTSMTDFYHSKRRL 156

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>MEN1_MOUSE (O88559) Menin|
          Length = 611

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 305 SVSAPGAWGEEGARNRRRGSRTGEGDAEEVPPP 207
           +  A   WG+E    RRRG R  E   EE PPP
Sbjct: 464 AAGAEEPWGDEAREGRRRGPRR-ESKPEEPPPP 495

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>ACL1_NEUCR (Q8X097) Probable ATP-citrate synthase subunit 1 (EC 2.3.3.8)|
           (ATP-citrate (pro-S-)-lyase 1) (Citrate cleavage enzyme
           subunit 1)
          Length = 670

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 196 ASVYGGGTSSASPSPVRLP----LRRFRAPSSPQAP 291
           AS  G   +SASP+P  L     +RRF APS P +P
Sbjct: 7   ASTNGANGASASPAPGNLSANDNIRRFAAPSRPLSP 42

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>MA2B1_MACFA (Q60HE9) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)|
           (Mannosidase, alpha B) (Lysosomal acid
           alpha-mannosidase) (Laman) (Mannosidase alpha class 2B
           member 1)
          Length = 1012

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +2

Query: 29  RVAGAYPACIVGQHGRHVRGLGAAP--RAPFPALGPRGATPPVELVLVNGANRAS--PSL 196
           + A  +   +    GR V  +   P     F    P G T P ++V+   ++  +  P L
Sbjct: 506 QTAARFQVIVYNPLGRKVNWMVRLPVSEGVFVVKDPNGRTVPSDVVIYPSSDSQAHPPEL 565

Query: 197 LQSTAEELLQRLLPRSGF--LSVGSAPPLRPKHRERRPITWSQESTCRTIQN 346
           L S +       LP  GF   SV   P  +P+ R  +PI     S   TI+N
Sbjct: 566 LFSAS-------LPALGFSTYSVAQVPRWKPQARAPQPIPRRSWSPALTIEN 610

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>MA2B1_HUMAN (O00754) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)|
           (Mannosidase, alpha B) (Lysosomal acid
           alpha-mannosidase) (Laman) (Mannosidase alpha class 2B
           member 1) [Contains: Lysosomal alpha-mannosidase A
           peptide; Lysosomal alpha-mannosidase
          Length = 1010

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +2

Query: 29  RVAGAYPACIVGQHGRHVRGLGAAP--RAPFPALGPRGATPPVELVLVNGANRAS--PSL 196
           + A  +   +    GR V  +   P     F    P G T P ++V+   ++  +  P L
Sbjct: 504 QTAARFQVIVYNPLGRKVNWMVRLPVSEGVFVVKDPNGRTVPSDVVIFPSSDSQAHPPEL 563

Query: 197 LQSTAEELLQRLLPRSGF--LSVGSAPPLRPKHRERRPITWSQESTCRTIQN 346
           L S +       LP  GF   SV   P  +P+ R  +PI     S   TI+N
Sbjct: 564 LFSAS-------LPALGFSTYSVAQVPRWKPQARAPQPIPRRSWSPALTIEN 608

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>FARP1_HUMAN (Q9Y4F1) FERM, RhoGEF and pleckstrin domain-containing protein 1|
           (Chondrocyte-derived ezrin-like protein)
          Length = 1045

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 220 SSASPSPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAEDITGTGTPEAED 396
           S  SP+P R P    +A  +  AP  E + V      Q  P+P Q    + TG+P   +
Sbjct: 424 SHPSPAPRRSPAGNKQADGAASAPTEEEEEVVKDRTQQSKPQPPQPSTGSLTGSPHLSE 482

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>ALL5_HEVBR (Q39967) Major latex allergen Hev b 5|
          Length = 150

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 268 APSSPQAPGAETDYVESGEYVQDDPEPFQAEDITGTGTPEAEDPDGTQLA 417
           AP+ P+AP  ET+  E  E ++   EP    D T   TPE +  +   +A
Sbjct: 54  APAEPEAPAPETEKAEEVEKIEKTEEPAPEADQT---TPEEKPAEPEPVA 100

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>TAPB_AERHY (P45792) Type IV pilus assembly protein tapB|
          Length = 568

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = +2

Query: 137 ATPPVELVLVNGANRASPSLLQSTAEELLQRLLPRSGFLSVGSAPPLRPKHRERR----P 304
           ATPPV L     ANR S  L      ++ +R LP+ G + +  +   R K  + R    P
Sbjct: 227 ATPPVNL-----ANRFSARLKVMARLDIAERRLPQDGRIKLKLS---RNKSMDMRVNTLP 278

Query: 305 ITWSQESTCRTIQNH-SKLRISQVQVPQRQR 394
             W ++   R + +  ++L I Q+    RQ+
Sbjct: 279 TMWGEKIVIRLLDSSAARLNIEQLGFDDRQK 309

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>NOG2_CRYGA (Q6TGJ8) Nucleolar GTP-binding protein 2|
          Length = 731

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 307 YVESGEYVQDDPEPFQAEDITGTGTPEAEDPDGTQLAWQ--YDEETD 441
           YVE  E V  D E  + E+       E ED +  +LAW+  + EE D
Sbjct: 582 YVEEEEVVDQDKEMVEKEEEEEEEEDEDEDEEEEELAWEDVFPEEAD 628

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>CXA12_RAT (Q80XF7) Gap junction alpha-12 protein (Connexin-47) (Cx47)|
          Length = 440

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 38  GAYPACIVGQHGRHVRGLGAAPRAP---FPALGPRGATPPVELVLVNGANRA 184
           G+    + G+ G    G G APR P   FPA     A PP   ++V  A RA
Sbjct: 291 GSAQDAVRGRRGASAAGPGPAPRPPPCAFPAAAAGLACPPDYSLVVRAAERA 342

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>WBS14_MOUSE (Q99MZ3) Williams-Beuren syndrome chromosome region 14 protein|
           homolog (Mlx interactor) (MLX-interacting protein-like)
          Length = 864

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +2

Query: 98  APRAPFPALGPRGATPPVELVLVNGANRASPSLLQSTAEELLQRL--LPRSGFLSVGSAP 271
           AP  P P  GP    PP  LV V  A R SP     +   L   L  +  SG LSV  +P
Sbjct: 586 APTPPRPPPGPATLAPPRSLV-VPKAERLSPPASSGSERRLSGDLNSIQPSGALSVHLSP 644

Query: 272 P 274
           P
Sbjct: 645 P 645

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>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)|
           (Hypoxia up-regulated 1) (170 kDa glucose-regulated
           protein)
          Length = 999

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +1

Query: 196 ASVYGGGTSS-ASPSPVRLPLRRFRAPS--SPQAPGAETDYVESGEYVQDDPEPFQAEDI 366
           +S++GGGTSS A  +          +P+  S   PG + D  E  E   +D       + 
Sbjct: 582 SSLFGGGTSSDAKENGTDAVQEEEESPTEGSKDEPGEQGDLKEETEAPVEDTSQPPPPEP 641

Query: 367 TGTGTPEAEDPD 402
            G   PE E PD
Sbjct: 642 KGDAAPEGEKPD 653

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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 2 (Brain cyclic nucleotide gated
            channel 2) (BCNG-2) (Hyperpolarization-activated cation
            channel 1) (HAC-1)
          Length = 863

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 37/127 (29%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
 Frame = +2

Query: 74   RHVRGLGAAPRAPFPALGPRGATPPVELVLVNGANRASPSLLQSTAEELLQRLLPRSGFL 253
            R VR     P  P  + GP  A+PP           A+PS     A       +P S   
Sbjct: 728  RLVRRAPPGPLPPAASPGPPAASPP-----------AAPS--SPRAPRTSPYGVPGSPAT 774

Query: 254  SVGSAPPLRPKHRERRPITWSQESTCRTIQNHS---KLRISQVQVPQRQRIPTAPSWRGS 424
             VG A P R   R  RP++ SQ S    +   S     R +    P+    PTA +   S
Sbjct: 775  RVGPALPARRLSRASRPLSASQPSLPHGVPAPSPAASARPASSSTPRLGPAPTARTAAPS 834

Query: 425  TTRRQIA 445
              RR  A
Sbjct: 835  PDRRDSA 841

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>POK_DROME (Q01842) Ets DNA-binding protein pokkuri (Protein yan) (Protein|
           anterior open)
          Length = 732

 Score = 27.3 bits (59), Expect(2) = 3.1
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +1

Query: 187 SFPASVYGGGTSSASPSPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAEDI 366
           S P S     T S    P  +P++   + SS  +   E     SG   +  P P      
Sbjct: 225 SNPTSSSASSTGSNGSQPNIMPMKGISSASSNHSDSEEEYSETSGGVSKMPPAPLSYSTA 284

Query: 367 TGTGTPEAED--PDGTQ 411
           +  GTP  +D  P+ TQ
Sbjct: 285 SPPGTPILKDIKPNWTQ 301



 Score = 21.2 bits (43), Expect(2) = 3.1
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 71  GRHVRGLGAAPRAPFPALGPRGATPPVELVLVNGANRASP 190
           G H     +   +P P++  + ++PP       GA  A+P
Sbjct: 169 GHHFMAPNSVTLSPPPSVDSQASSPPQAPYQNGGATGAAP 208

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>SIPA1_HUMAN (Q96FS4) Signal-induced proliferation-associated protein 1 (Sipa-1)|
           (GTPase-activating protein Spa-1) (p130 SPA-1)
          Length = 1042

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 343 LDRPARTLLTPRNRSPLPVLGAKRGRGTDGEEAGP 239
           L +PAR  LTP    P PV G     G+D  EA P
Sbjct: 28  LRQPARPPLTPHTFEPRPVRGPLLRSGSDAGEARP 62

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>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
 Frame = +1

Query: 193  PASVYGGGTSSASP--------SPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEP 348
            PAS Y   + + SP        SP   P     +PSSP + GA  DY  S  Y      P
Sbjct: 1749 PASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGY--SPTLP 1806

Query: 349  FQAEDITGTGTPEAED 396
              +   TG  TP   D
Sbjct: 1807 GYSPSSTGQYTPHEGD 1822

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>GLYM_FLAPR (P49357) Serine hydroxymethyltransferase 1, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 517

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/88 (26%), Positives = 37/88 (42%)
 Frame = +2

Query: 197 LQSTAEELLQRLLPRSGFLSVGSAPPLRPKHRERRPITWSQESTCRTIQNHSKLRISQVQ 376
           L S+A++ LQRL       S+ S P      +ER  +TW +       Q ++ L +   +
Sbjct: 10  LSSSADKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPK-------QLNAPLEVVDPE 62

Query: 377 VPQRQRIPTAPSWRGSTTRRQIAFT*LS 460
           +     +  A  W+G        FT LS
Sbjct: 63  IADIIELEKARQWKGLELIPSENFTSLS 90

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>AGRP_PIG (Q9TU18) Agouti-related protein precursor|
          Length = 134

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 41  AYPACIVGQHG-RHVRGLGAAPRAPFPALGPRGATPPVELVLVNGANRASPSLLQSTAEE 217
           A P  +  Q G   + G+G   +A FP L   G  PP++      A RA  +LLQ    +
Sbjct: 14  AMPTMLGAQIGLAPLEGIGRLDQALFPELQDLGLQPPLKRTT---AERAEEALLQQAEAK 70

Query: 218 LLQRLLPRSG 247
            L  +L   G
Sbjct: 71  ALAEVLDPEG 80

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>SYP2L_MOUSE (Q8BWB1) Synaptopodin 2-like protein|
          Length = 975

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +1

Query: 196 ASVYGGGTSSA--SPSPVRLPLR-RFRAPSSPQAPGAETDYVESGEYVQDDP-EPFQAED 363
           +  Y G T S    P+    P R R R P+ P  PGA  D V    Y+ D P EP   + 
Sbjct: 131 SEAYYGETDSDVDGPATQEKPRRTRRRGPARPSLPGAPPDEV----YLSDSPAEPAPVK- 185

Query: 364 ITGTGTPEAEDPDGTQLAWQ 423
              TG+P   D   +  +W+
Sbjct: 186 ---TGSPSQGDSRVSSPSWE 202

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>CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96|
          Length = 560

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 235 SPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDP--EPFQAEDITGTGTPEAEDPDGT 408
           S   LPL R     +  AP AET+ VE  E  +++   +  ++E   G G P     +G 
Sbjct: 145 SQASLPLTRIGEEEAAAAPEAETERVEGEEEDEEETRRDGAESEGRAGEGRPAKSQEEGK 204

Query: 409 QL 414
            L
Sbjct: 205 PL 206

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>A4_RAT (P08592) Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer|
           disease amyloid protein homolog) (Amyloidogenic
           glycoprotein) (AG) [Contains: Soluble APP-alpha
           (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99;
           Beta-amyloid protein 42 (Beta-APP
          Length = 770

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 292 GAETDYVESGEYVQDDPEPFQAEDITGTGTPEAEDPDGTQLAWQYDEETDRLY 450
           GA+TDY + GE      E  + E++      EAED +  +   + +EE +  Y
Sbjct: 212 GADTDYADGGE--DKVVEVAEEEEVADVEEEEAEDDEDVEDGDEVEEEAEEPY 262

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>MOVP_AMVYS (P24265) Movement protein (MP) (Protein 3A)|
          Length = 300

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 122 LGPRGATPPVELVLVNGANRASPSLLQSTAEELLQRLLPRSG 247
           LGP       +LVL NGA     SL+    + +L R+LP+ G
Sbjct: 42  LGPNQLKLCTQLVLSNGAAPVVLSLVSKEKKSILSRILPKIG 83

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>MOVP_AMVMA (P05672) Movement protein (MP) (Protein 3A)|
          Length = 300

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 122 LGPRGATPPVELVLVNGANRASPSLLQSTAEELLQRLLPRSG 247
           LGP       +LVL NGA     SL+    + +L R+LP+ G
Sbjct: 42  LGPNQLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIG 83

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>MOVP_AMVLE (P03595) Movement protein (MP) (Protein 3A)|
          Length = 300

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 122 LGPRGATPPVELVLVNGANRASPSLLQSTAEELLQRLLPRSG 247
           LGP       +LVL NGA     SL+    + +L R+LP+ G
Sbjct: 42  LGPNQLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIG 83

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>MRP_RABIT (P35566) MARCKS-related protein (MARCKS-like protein 1) (Macrophage|
           myristoylated alanine-rich C kinase substrate)
           (Mac-MARCKS) (MacMARCKS)
          Length = 198

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +2

Query: 26  ERVAGAYPACIVGQHGRHVRGLG-AAPRAPFPALGPRGATPPVELVLVNGANRASPSLLQ 202
           E  AGA PA   GQ   HV+  G   P+         G +PP     VNG + A+     
Sbjct: 15  EEAAGASPAKANGQENGHVKSNGDLTPKG-------EGESPP-----VNGTDEAA----- 57

Query: 203 STAEELLQRLLPRSGFLSVGSAPPLR-PKHRER 298
               + ++   P  G  + G APP   PK +++
Sbjct: 58  GATGDAIEPAPPSQGAEAKGDAPPKETPKKKKK 90

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>FARP1_PONPY (Q5RAB8) FERM, RhoGEF and pleckstrin domain-containing protein 1|
          Length = 1045

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +1

Query: 220 SSASPSPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAEDITGTGTPEAED 396
           S  SP P R P    +A  +  AP  E + V      Q  P+P Q    + TG+P   +
Sbjct: 424 SHPSPVPRRSPAGNKQADGAASAPTEEEEEVVKDRTQQSKPQPPQPSTGSLTGSPHLSE 482

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>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC|
            2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene)
          Length = 1254

 Score = 25.8 bits (55), Expect(2) = 6.2
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 101  PRAPFPALGPRGATPPVELVLVNGANRASPSLLQ-STAEELLQRLLPRSGFLSVGSAPPL 277
            P  P P + P GAT      L  G N     +     A E  + L+PR G  S    P L
Sbjct: 1153 PEGPLPPVRPAGATLERPKTLSPGKNGVVKDVFTFGGAVENPEYLVPRGGSASQPHPPAL 1212

Query: 278  RP 283
             P
Sbjct: 1213 CP 1214



 Score = 21.6 bits (44), Expect(2) = 6.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 325  YVQDDPEPFQAEDITGTGTPEAEDPD 402
            Y   DP    +   T  GTP AE+P+
Sbjct: 1221 YWDQDPSERGSPPNTFEGTPTAENPE 1246

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>KPCD3_HUMAN (O94806) Serine/threonine-protein kinase D3 (EC 2.7.11.13) (Protein|
           kinase C nu type) (nPKC-nu) (Protein kinase EPK2)
          Length = 890

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 195 CFSLRRRNFFSVSFPGPASSPSVPRPL 275
           C  +R+R   +VS PGP    SVPRPL
Sbjct: 204 CSGVRKRRLSNVSLPGPGL--SVPRPL 228

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>MYOC_DICDI (P42522) Myosin IC heavy chain|
          Length = 1181

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +1

Query: 211  GGTSSASPSPVRLPLRRFRAPSSPQAP---GAETDYVESGEYVQDDPEPFQAEDITGTGT 381
            GG S   PSP   P+ +  AP++P  P   GA T  ++     Q   +P      T    
Sbjct: 1060 GGVSKPLPSPTGAPMMKKPAPTAPGGPAPAGAPTPMMKK-PAGQPMMKPIAKPQPTPMKK 1118

Query: 382  PEAEDPDGTQLAWQYD 429
            P A  P      ++YD
Sbjct: 1119 PAAPPPQQYIALYEYD 1134

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>CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96|
          Length = 555

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 247 LPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAE--DITGTGTPEAEDPDGTQL 414
           LPL R     +  AP AET+ VE  E  +++ +   AE  +  G G P     +G +L
Sbjct: 144 LPLTRIDEEEAAAAPEAETERVEGEEEDKEETQRDGAESKERDGEGRPAKSQEEGKRL 201

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>KPCD3_MOUSE (Q8K1Y2) Serine/threonine-protein kinase D3 (EC 2.7.11.13) (Protein|
           kinase C nu type) (nPKC-nu)
          Length = 889

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 195 CFSLRRRNFFSVSFPGPASSPSVPRPL 275
           C  +R+R   +VS PGP    SVPRPL
Sbjct: 204 CSGVRKRRLSNVSLPGPGL--SVPRPL 228

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>VPRT_HTL1C (P14074) Protease (EC 3.4.23.-)|
          Length = 302

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 101 PRAPFPALGPRGATPPVELVLVNGANRASPSLLQS----TAEELLQRLLPRSGFLSVGSA 268
           P+A +P    RG  PP+     +     +P  L      T+   LQ++LP     S+   
Sbjct: 47  PKAHYPRTRARGGCPPIR----SPRRHPTPKKLHRGGGLTSPPTLQQVLPNQDPTSILPV 102

Query: 269 PPLRPKHRERRPITWSQEST 328
            PL P    RRP+  +Q  T
Sbjct: 103 IPLDP---ARRPVIKAQIDT 119

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>CXA12_MOUSE (Q8BQU6) Gap junction alpha-12 protein (Connexin-47) (Cx47)|
          Length = 440

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 38  GAYPACIVGQHGRHVRGLGAAPRAP---FPALGPRGATPPVELVLVNGANRA 184
           G+    + G+ G    G G  PR P   FPA     A PP   ++V  A RA
Sbjct: 291 GSAQDAVRGRRGASAAGPGPTPRPPPCAFPAAAAGLACPPDYSLVVRAAERA 342

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>E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ETS-related|
           protein E74B)
          Length = 883

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = +1

Query: 184 VSFPASVYGGGTSSASPSPVRLPLRRFRAPSSPQAPG-----AETDYVESGEYVQDDPEP 348
           +S  +S      SSA+P+PV  P+     P +  AP      A  +  E G+  +   +P
Sbjct: 41  LSLSSSSSSSSLSSATPTPVASPVTPTSPPPAAAAPAEASPPAGAELQEDGQQAKTQEDP 100

Query: 349 -FQAEDITGTGTPEAEDP 399
             + +D+      E +DP
Sbjct: 101 TMKDQDMLEKTRQEVKDP 118

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>IF2_THIDA (Q3SKX1) Translation initiation factor IF-2|
          Length = 922

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +1

Query: 196 ASVYGGGTSSASPSPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAEDITGT 375
           A+      + A+P P    +    AP   QAP AET   E        PEP    ++T  
Sbjct: 109 AAAEPAAAAPAAPPPALEEVPAEPAPIEAQAPVAETPAAEPAVVEAPAPEPAVTAEVTAP 168

Query: 376 GTPEA 390
              EA
Sbjct: 169 APVEA 173

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>SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (MSal)|
           (Fragment)
          Length = 1323

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 28/90 (31%), Positives = 37/90 (41%)
 Frame = +2

Query: 8   CRSSREERVAGAYPACIVGQHGRHVRGLGAAPRAPFPALGPRGATPPVELVLVNGANRAS 187
           C +S     +GA+PAC  G     V    AA      A+ P+ A+ P  L          
Sbjct: 278 CSTSAAPPDSGAHPACSTGPAPGAV---AAASSTVGNAVQPQNASTPPAL---------G 325

Query: 188 PSLLQSTAEELLQRLLPRSGFLSVGSAPPL 277
           P  L S+A  L   LLP++   SV    PL
Sbjct: 326 PGPLLSSASNLPNPLLPQTSSSSVIFPNPL 355

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>GLYN_FLAPR (P49358) Serine hydroxymethyltransferase 2, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 517

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = +2

Query: 197 LQSTAEELLQRLLPRSGFLSVGSAPPLRPKHRERRPITWSQESTCRTIQNHSKLRISQVQ 376
           L S++ + LQRL       S+ S P      +ER  +TW +       Q ++ L +   +
Sbjct: 10  LSSSSNKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPK-------QLNAPLEVGDPE 62

Query: 377 VPQRQRIPTAPSWRGSTTRRQIAFT*LS 460
           +     +  A  W+G        FT LS
Sbjct: 63  IADIIELEKARQWKGLELILSENFTSLS 90

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>RPOC_SILPO (Q5LMQ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1413

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223  SASPSPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQD-DPEPFQAEDITG 372
            S  PS   +    +  P     P  E D+V+ G+Y+ D +P P     I G
Sbjct: 1170 SIEPSNEAMEPVEYMVPKGKHIPVQEGDFVQKGDYIMDGNPAPHDILSILG 1220

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>NPAS2_MOUSE (P97460) Neuronal PAS domain protein 2 (Neuronal PAS2)|
          Length = 816

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 220 SSASPSPVRLPLRRFRAPSSPQAPGAETDYVESGEYVQDDPEPFQAEDITGTGTPEAEDP 399
           S  S + VR+  R+  A   P         V+  +   + P+PF A D+  +G P +  P
Sbjct: 349 SVVSYADVRVERRQELALEDPPTEAMHPSAVKEKDSSLEPPQPFNALDMGASGLPSSPSP 408

Query: 400 DGT 408
             +
Sbjct: 409 SAS 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,863,716
Number of Sequences: 219361
Number of extensions: 1108057
Number of successful extensions: 5578
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 5097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5562
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result