ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPTXR_HUMAN (O95502) Neuronal pentraxin receptor 30 3.9
2NPTXR_RAT (O35764) Neuronal pentraxin receptor 29 6.7

>NPTXR_HUMAN (O95502) Neuronal pentraxin receptor|
          Length = 499

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 322 GLGGVDGPGALSGGPAPXXXXXXXXELLGRFAAAPVADA 438
           G GG  GP AL G PA          L  RF   P+A A
Sbjct: 64  GAGGSAGPPALPGAPAASAHPLPPGPLFSRFLCTPLAAA 102



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>NPTXR_RAT (O35764) Neuronal pentraxin receptor|
          Length = 494

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 322 GLGGVDGPGALSGGPAPXXXXXXXXELLGRFAAAPVADA 438
           G GG  GP  L G PA          LL RF   P+A A
Sbjct: 63  GAGGSAGPSVLPGEPAASVFPPPPGPLLSRFLCTPLAAA 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,062,250
Number of Sequences: 219361
Number of extensions: 270438
Number of successful extensions: 958
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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