| Clone Name | bast57c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 280 bits (141), Expect = 4e-72 Identities = 225/253 (88%) Strand = Plus / Plus Query: 79 cagataaggtgagatggcctgttcttgtactggctattctggcttcagttgttggaagcc 138 |||||||||||||||||||||| ||||||||||| ||| | |||||||| || ||||||| Sbjct: 12501381 cagataaggtgagatggcctgtgcttgtactggcgattttagcttcagtggtcggaagcc 12501440 Query: 139 aagcaatcatcagcggaacattctcgataatcaatcagagtcagtccctaagctgcttcc 198 |||| |||||||||||||||||||| || ||||| ||||| |||||| |||| || |||| Sbjct: 12501441 aagcgatcatcagcggaacattctcaatcatcaaccagagccagtccttaagttgtttcc 12501500 Query: 199 ctagggtaaaagttgtacacacatctgagaaaattcatggccagatatacatccctgaga 258 || | || ||||| |||||||| ||||| |||||||||||||| ||||| |||||||||| Sbjct: 12501501 ctcgagtgaaagtcgtacacacgtctgataaaattcatggccaaatatatatccctgaga 12501560 Query: 259 tcaactggctactcatgatcctctgcattgctgtgactgttggatttagagacactaagc 318 | || ||| | |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 12501561 ttaattggttgctcatgatcctctgcattgctgtgactgttggatttagagacacaaagc 12501620 Query: 319 acatgggaaacgc 331 ||||||| ||||| Sbjct: 12501621 acatggggaacgc 12501633 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 1 acatgggtcaggcagcttacttgtcaaagcatcatgacttttactcaaactctcaagttg 60 |||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct: 12501173 acatgggtcaagcggcttacttatcaaagcatcatgacttttactcgaactcccaagttg 12501232 Query: 61 gattttacatcgcagttccag 81 ||||||||||||||||||||| Sbjct: 12501233 gattttacatcgcagttccag 12501253 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Plus Query: 345 gtgatcactgtgatgctggttaccacattcctgacatcccttgtgatcatggtgtgctgg 404 |||||||| ||||||||||| ||||| | |||||| ||||| ||||||||| |||||||| Sbjct: 12502043 gtgatcacagtgatgctggtgaccacctgcctgacgtccctggtgatcatgctgtgctgg 12502102 Query: 405 cacaagccacccctgcttgccctgggcttcctcctcttcttcgg 448 | || ||| || |||| || ||| ||||||||||||||||||| Sbjct: 12502103 cgcaggccgccggtgctggcgctgtgcttcctcctcttcttcgg 12502146
>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03, from chromosome 3, complete sequence Length = 124550 Score = 280 bits (141), Expect = 4e-72 Identities = 225/253 (88%) Strand = Plus / Minus Query: 79 cagataaggtgagatggcctgttcttgtactggctattctggcttcagttgttggaagcc 138 |||||||||||||||||||||| ||||||||||| ||| | |||||||| || ||||||| Sbjct: 86560 cagataaggtgagatggcctgtgcttgtactggcgattttagcttcagtggtcggaagcc 86501 Query: 139 aagcaatcatcagcggaacattctcgataatcaatcagagtcagtccctaagctgcttcc 198 |||| |||||||||||||||||||| || ||||| ||||| |||||| |||| || |||| Sbjct: 86500 aagcgatcatcagcggaacattctcaatcatcaaccagagccagtccttaagttgtttcc 86441 Query: 199 ctagggtaaaagttgtacacacatctgagaaaattcatggccagatatacatccctgaga 258 || | || ||||| |||||||| ||||| |||||||||||||| ||||| |||||||||| Sbjct: 86440 ctcgagtgaaagtcgtacacacgtctgataaaattcatggccaaatatatatccctgaga 86381 Query: 259 tcaactggctactcatgatcctctgcattgctgtgactgttggatttagagacactaagc 318 | || ||| | |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 86380 ttaattggttgctcatgatcctctgcattgctgtgactgttggatttagagacacaaagc 86321 Query: 319 acatgggaaacgc 331 ||||||| ||||| Sbjct: 86320 acatggggaacgc 86308 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Minus Query: 1 acatgggtcaggcagcttacttgtcaaagcatcatgacttttactcaaactctcaagttg 60 |||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct: 86768 acatgggtcaagcggcttacttatcaaagcatcatgacttttactcgaactcccaagttg 86709 Query: 61 gattttacatcgcagttccag 81 ||||||||||||||||||||| Sbjct: 86708 gattttacatcgcagttccag 86688 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 345 gtgatcactgtgatgctggttaccacattcctgacatcccttgtgatcatggtgtgctgg 404 |||||||| ||||||||||| ||||| | |||||| ||||| ||||||||| |||||||| Sbjct: 85898 gtgatcacagtgatgctggtgaccacctgcctgacgtccctggtgatcatgctgtgctgg 85839 Query: 405 cacaagccacccctgcttgccctgggcttcctcctcttcttcgg 448 | || ||| || |||| || ||| ||||||||||||||||||| Sbjct: 85838 cgcaggccgccggtgctggcgctgtgcttcctcctcttcttcgg 85795
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 280 bits (141), Expect = 4e-72 Identities = 225/253 (88%) Strand = Plus / Plus Query: 79 cagataaggtgagatggcctgttcttgtactggctattctggcttcagttgttggaagcc 138 |||||||||||||||||||||| ||||||||||| ||| | |||||||| || ||||||| Sbjct: 12498144 cagataaggtgagatggcctgtgcttgtactggcgattttagcttcagtggtcggaagcc 12498203 Query: 139 aagcaatcatcagcggaacattctcgataatcaatcagagtcagtccctaagctgcttcc 198 |||| |||||||||||||||||||| || ||||| ||||| |||||| |||| || |||| Sbjct: 12498204 aagcgatcatcagcggaacattctcaatcatcaaccagagccagtccttaagttgtttcc 12498263 Query: 199 ctagggtaaaagttgtacacacatctgagaaaattcatggccagatatacatccctgaga 258 || | || ||||| |||||||| ||||| |||||||||||||| ||||| |||||||||| Sbjct: 12498264 ctcgagtgaaagtcgtacacacgtctgataaaattcatggccaaatatatatccctgaga 12498323 Query: 259 tcaactggctactcatgatcctctgcattgctgtgactgttggatttagagacactaagc 318 | || ||| | |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 12498324 ttaattggttgctcatgatcctctgcattgctgtgactgttggatttagagacacaaagc 12498383 Query: 319 acatgggaaacgc 331 ||||||| ||||| Sbjct: 12498384 acatggggaacgc 12498396 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 1 acatgggtcaggcagcttacttgtcaaagcatcatgacttttactcaaactctcaagttg 60 |||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct: 12497936 acatgggtcaagcggcttacttatcaaagcatcatgacttttactcgaactcccaagttg 12497995 Query: 61 gattttacatcgcagttccag 81 ||||||||||||||||||||| Sbjct: 12497996 gattttacatcgcagttccag 12498016 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Plus Query: 345 gtgatcactgtgatgctggttaccacattcctgacatcccttgtgatcatggtgtgctgg 404 |||||||| ||||||||||| ||||| | |||||| ||||| ||||||||| |||||||| Sbjct: 12498806 gtgatcacagtgatgctggtgaccacctgcctgacgtccctggtgatcatgctgtgctgg 12498865 Query: 405 cacaagccacccctgcttgccctgggcttcctcctcttcttcgg 448 | || ||| || |||| || ||| ||||||||||||||||||| Sbjct: 12498866 cgcaggccgccggtgctggcgctgtgcttcctcctcttcttcgg 12498909
>emb|AJ427977.1|OSA427977 Oryza sativa partial HAK8 gene for putative potasium transporter Length = 4296 Score = 280 bits (141), Expect = 4e-72 Identities = 225/253 (88%) Strand = Plus / Plus Query: 79 cagataaggtgagatggcctgttcttgtactggctattctggcttcagttgttggaagcc 138 |||||||||||||||||||||| ||||||||||| ||| | |||||||| || ||||||| Sbjct: 2038 cagataaggtgagatggcctgtgcttgtactggcgattttagcttcagtggtcggaagcc 2097 Query: 139 aagcaatcatcagcggaacattctcgataatcaatcagagtcagtccctaagctgcttcc 198 |||| |||||||||||||||||||| || ||||| ||||| |||||| |||| || |||| Sbjct: 2098 aagcgatcatcagcggaacattctcaatcatcaaccagagccagtccttaagttgtttcc 2157 Query: 199 ctagggtaaaagttgtacacacatctgagaaaattcatggccagatatacatccctgaga 258 || | || ||||| |||||||| ||||| |||||||||||||| ||||| |||||||||| Sbjct: 2158 ctcgagtgaaagtcgtacacacgtctgataaaattcatggccaaatatatatccctgaga 2217 Query: 259 tcaactggctactcatgatcctctgcattgctgtgactgttggatttagagacactaagc 318 | || ||| | |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 2218 ttaattggttgctcatgatcctctgcattgctgtgactgttggatttagagacacaaagc 2277 Query: 319 acatgggaaacgc 331 ||||||| ||||| Sbjct: 2278 acatggggaacgc 2290 Score = 121 bits (61), Expect = 2e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 1 acatgggtcaggcagcttacttgtcaaagcatcatgacttttactcaaactctcaagttg 60 |||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||| Sbjct: 1830 acatgggtcaagcggcttacttatcaaagcatcatgacttttactcgaactcccaagttg 1889 Query: 61 gattttacatcgcagttccag 81 ||||||||||||||||||||| Sbjct: 1890 gattttacatcgcagttccag 1910 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Plus Query: 345 gtgatcactgtgatgctggttaccacattcctgacatcccttgtgatcatggtgtgctgg 404 |||||||| ||||||||||| ||||| | |||||| ||||| ||||||||| |||||||| Sbjct: 2700 gtgatcacagtgatgctggtgaccacctgcctgacgtccctggtgatcatgctgtgctgg 2759 Query: 405 cacaagccacccctgcttgccctgggcttcctcctcttcttcgg 448 | || ||| || |||| || ||| ||||||||||||||||||| Sbjct: 2760 cgcaggccgccggtgctggcgctgtgcttcctcctcttcttcgg 2803
>ref|XM_479530.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2676 Score = 276 bits (139), Expect = 6e-71 Identities = 271/315 (86%) Strand = Plus / Plus Query: 93 tggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatcagc 152 |||||||| ||||| ||||| ||| |||| || || || |||||||||||||||||||| Sbjct: 1218 tggcctgtgcttgtgctggcaattttggcatcggtcgtcggaagccaagcaatcatcagt 1277 Query: 153 ggaacattctcgataatcaatcagagtcagtccctaagctgcttccctagggtaaaagtt 212 ||||||||||| || ||||| ||||| ||||| || || |||||||| || || ||||| Sbjct: 1278 ggaacattctccatcatcaaccagagccagtcactcagttgcttcccaagagtgaaagtg 1337 Query: 213 gtacacacatctgagaaaattcatggccagatatacatccctgagatcaactggctactc 272 || |||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 1338 gtgcacacatctgagaatatccatggccagatttacatccctgagatcaactggctgctc 1397 Query: 273 atgatcctctgcattgctgtgactgttggatttagagacactaagcacatgggaaacgca 332 ||| |||||||||||||||||||||| || ||| | || || ||||| |||||||| ||| Sbjct: 1398 atggtcctctgcattgctgtgactgtcggttttcgcgataccaagcatatgggaaatgca 1457 Query: 333 tccggactagcagtgatcactgtgatgctggttaccacattcctgacatcccttgtgatc 392 |||||| | ||||||||||| ||||||||||| || |||| |||||||||| | |||||| Sbjct: 1458 tccggattggcagtgatcacggtgatgctggtgacgacatgcctgacatccttggtgatc 1517 Query: 393 atggtgtgctggcac 407 ||| |||| |||||| Sbjct: 1518 atgctgtgttggcac 1532
>dbj|AK070738.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062E24, full insert sequence Length = 2676 Score = 276 bits (139), Expect = 6e-71 Identities = 271/315 (86%) Strand = Plus / Plus Query: 93 tggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatcagc 152 |||||||| ||||| ||||| ||| |||| || || || |||||||||||||||||||| Sbjct: 1218 tggcctgtgcttgtgctggcaattttggcatcggtcgtcggaagccaagcaatcatcagt 1277 Query: 153 ggaacattctcgataatcaatcagagtcagtccctaagctgcttccctagggtaaaagtt 212 ||||||||||| || ||||| ||||| ||||| || || |||||||| || || ||||| Sbjct: 1278 ggaacattctccatcatcaaccagagccagtcactcagttgcttcccaagagtgaaagtg 1337 Query: 213 gtacacacatctgagaaaattcatggccagatatacatccctgagatcaactggctactc 272 || |||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 1338 gtgcacacatctgagaatatccatggccagatttacatccctgagatcaactggctgctc 1397 Query: 273 atgatcctctgcattgctgtgactgttggatttagagacactaagcacatgggaaacgca 332 ||| |||||||||||||||||||||| || ||| | || || ||||| |||||||| ||| Sbjct: 1398 atggtcctctgcattgctgtgactgtcggttttcgcgataccaagcatatgggaaatgca 1457 Query: 333 tccggactagcagtgatcactgtgatgctggttaccacattcctgacatcccttgtgatc 392 |||||| | ||||||||||| ||||||||||| || |||| |||||||||| | |||||| Sbjct: 1458 tccggattggcagtgatcacggtgatgctggtgacgacatgcctgacatccttggtgatc 1517 Query: 393 atggtgtgctggcac 407 ||| |||| |||||| Sbjct: 1518 atgctgtgttggcac 1532
>dbj|AB254449.1| Phragmites australis PhaHAK2-e mRNA for potassium transporter, complete cds, strain: Enchi Length = 2429 Score = 262 bits (132), Expect = 1e-66 Identities = 294/348 (84%) Strand = Plus / Plus Query: 60 ggattttacatcgcagttccagataaggtgagatggcctgttcttgtactggctattctg 119 ||||| ||||||||||||||||| | || || |||||||| ||||| ||||| |||||| Sbjct: 1007 ggattctacatcgcagttccagagagtgtcaggtggcctgtgcttgtgctggcgattctg 1066 Query: 120 gcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagt 179 || || ||||| |||||||||||||||||||| ||||| ||||| || ||||| ||||| Sbjct: 1067 gcgtcggttgtcggaagccaagcaatcatcagtggaacgttctccattatcaaccagagc 1126 Query: 180 cagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaattcatggc 239 ||||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 1127 cagtccctaagttgcttccccagggtgaaagttgtgcacacgtctgacaaaattcatgga 1186 Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 |||||||||||||||||| | |||||| | |||||||||||||| |||||||||||||| Sbjct: 1187 cagatatacatccctgaggtgaactggatgctcatgatcctctgtattgctgtgactgtc 1246 Query: 300 ggatttagagacactaagcacatgggaaacgcatccggactagcagtgatcactgtgatg 359 || ||| | | || |||| ||||||||| ||||| || | || || ||||| |||||| Sbjct: 1247 ggttttcgcaatacaaagcgcatgggaaatgcatctggcttggcggtaatcacggtgatg 1306 Query: 360 ctggttaccacattcctgacatcccttgtgatcatggtgtgctggcac 407 ||||| || |||| ||| | ||||| ||||||||| ||||||||||| Sbjct: 1307 ctggtgacgacatgcctcatgtccctggtgatcatgctgtgctggcac 1354
>dbj|AB254448.1| Phragmites australis PhaHAK2-n mRNA for potassium transporter, complete cds, strain: Nanpi Length = 2430 Score = 262 bits (132), Expect = 1e-66 Identities = 294/348 (84%) Strand = Plus / Plus Query: 60 ggattttacatcgcagttccagataaggtgagatggcctgttcttgtactggctattctg 119 ||||| ||||||||||||||||| | || || |||||||| ||||| ||||| |||||| Sbjct: 1007 ggattctacatcgcagttccagagagtgtcaggtggcctgtgcttgtgctggcgattctg 1066 Query: 120 gcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagt 179 || || ||||| |||||||||||||||||||| ||||| ||||| || ||||| ||||| Sbjct: 1067 gcgtcggttgtcggaagccaagcaatcatcagtggaacgttctccattatcaaccagagc 1126 Query: 180 cagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaattcatggc 239 ||||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 1127 cagtccctaagttgcttccccagggtgaaagttgtgcacacgtctgacaaaattcatgga 1186 Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 |||||||||||||||||| | |||||| | |||||||||||||| |||||||||||||| Sbjct: 1187 cagatatacatccctgaggtgaactggatgctcatgatcctctgtattgctgtgactgtc 1246 Query: 300 ggatttagagacactaagcacatgggaaacgcatccggactagcagtgatcactgtgatg 359 || ||| | | || |||| ||||||||| ||||| || | || || ||||| |||||| Sbjct: 1247 ggttttcgcaatacaaagcgcatgggaaatgcatctggcttggcggtaatcacggtgatg 1306 Query: 360 ctggttaccacattcctgacatcccttgtgatcatggtgtgctggcac 407 ||||| || |||| ||| | ||||| ||||||||| ||||||||||| Sbjct: 1307 ctggtgacgacatgcctcatgtccctggtgatcatgctgtgctggcac 1354
>dbj|AB254447.1| Phragmites australis PhaHAK2-u mRNA for potassium transporter, complete cds, strain: Utsunomiya Length = 2493 Score = 260 bits (131), Expect = 4e-66 Identities = 338/407 (83%) Strand = Plus / Plus Query: 1 acatgggtcaggcagcttacttgtcaaagcatcatgacttttactcaaactctcaagttg 60 |||||||||| || ||||| ||||| || || ||| || || || ||| || ||| ||| Sbjct: 948 acatgggtcaagctgcttatttgtccaaacaccataaccttgacgcaagctaccaaattg 1007 Query: 61 gattttacatcgcagttccagataaggtgagatggcctgttcttgtactggctattctgg 120 |||| ||||||||||||||||| | || || |||||||| ||||| ||||| || ||| Sbjct: 1008 gattctacatcgcagttccagagagtgtcaggtggcctgtgcttgtgctggcaatattgg 1067 Query: 121 cttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagtc 180 | ||||| || |||||||||||||||||||| ||||||||||| || ||||| ||||| | Sbjct: 1068 cgtcagtggtcggaagccaagcaatcatcagtggaacattctccattatcaaccagagcc 1127 Query: 181 agtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaattcatggcc 240 ||||||| ||||||||||| ||||| |||||||| ||||||||||| || |||||||| | Sbjct: 1128 agtccctgagctgcttccccagggtgaaagttgtgcacacatctgacaagattcatggac 1187 Query: 241 agatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgttg 300 |||||||||||||||||||||||||| | |||||||||||||| || ||||| ||||| | Sbjct: 1188 agatatacatccctgagatcaactggttgctcatgatcctctgtatcgctgtaactgtcg 1247 Query: 301 gatttagagacactaagcacatgggaaacgcatccggactagcagtgatcactgtgatgc 360 | ||| | | || |||| ||||||||| ||||| || | || || ||||| ||||||| Sbjct: 1248 gttttcgcaatacaaagcgcatgggaaatgcatctggcttggcggtaatcacggtgatgc 1307 Query: 361 tggttaccacattcctgacatcccttgtgatcatggtgtgctggcac 407 |||| || |||| ||| | ||||| ||||||||| ||||||||||| Sbjct: 1308 tggtgacgacatgcctcatgtccctggtgatcatgctgtgctggcac 1354
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 216 bits (109), Expect = 5e-53 Identities = 211/245 (86%) Strand = Plus / Minus Query: 93 tggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatcagc 152 |||||||| ||||| ||||| ||| |||| || || || |||||||||||||||||||| Sbjct: 28689953 tggcctgtgcttgtgctggcaattttggcatcggtcgtcggaagccaagcaatcatcagt 28689894 Query: 153 ggaacattctcgataatcaatcagagtcagtccctaagctgcttccctagggtaaaagtt 212 ||||||||||| || ||||| ||||| ||||| || || |||||||| || || ||||| Sbjct: 28689893 ggaacattctccatcatcaaccagagccagtcactcagttgcttcccaagagtgaaagtg 28689834 Query: 213 gtacacacatctgagaaaattcatggccagatatacatccctgagatcaactggctactc 272 || |||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 28689833 gtgcacacatctgagaatatccatggccagatttacatccctgagatcaactggctgctc 28689774 Query: 273 atgatcctctgcattgctgtgactgttggatttagagacactaagcacatgggaaacgca 332 ||| |||||||||||||||||||||| || ||| | || || ||||| |||||||| ||| Sbjct: 28689773 atggtcctctgcattgctgtgactgtcggttttcgcgataccaagcatatgggaaatgca 28689714 Query: 333 tccgg 337 ||||| Sbjct: 28689713 tccgg 28689709 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 342 gcagtgatcactgtgatgctggttaccacattcctgacatcccttgtgatcatggtgtgc 401 ||||||||||| ||||||||||| || |||| |||||||||| | ||||||||| |||| Sbjct: 28689519 gcagtgatcacggtgatgctggtgacgacatgcctgacatccttggtgatcatgctgtgt 28689460 Query: 402 tggcac 407 |||||| Sbjct: 28689459 tggcac 28689454
>emb|AJ427978.1|OSA427978 Oryza sativa HAK9 gene for putative potasium transporter, exons 1-9 Length = 4425 Score = 216 bits (109), Expect = 5e-53 Identities = 211/245 (86%) Strand = Plus / Plus Query: 93 tggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatcagc 152 |||||||| ||||| ||||| ||| |||| || || || |||||||||||||||||||| Sbjct: 2407 tggcctgtgcttgtgctggcaattttggcatcggtcgtcggaagccaagcaatcatcagt 2466 Query: 153 ggaacattctcgataatcaatcagagtcagtccctaagctgcttccctagggtaaaagtt 212 ||||||||||| || ||||| ||||| ||||| || || |||||||| || || ||||| Sbjct: 2467 ggaacattctccatcatcaaccagagccagtcactcagttgcttcccaagagtgaaagtg 2526 Query: 213 gtacacacatctgagaaaattcatggccagatatacatccctgagatcaactggctactc 272 || |||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 2527 gtgcacacatctgagaatatccatggccagatttacatccctgagatcaactggctgctc 2586 Query: 273 atgatcctctgcattgctgtgactgttggatttagagacactaagcacatgggaaacgca 332 ||| |||||||||||||||||||||| || ||| | || || ||||| |||||||| ||| Sbjct: 2587 atggtcctctgcattgctgtgactgtcggttttcgcgataccaagcatatgggaaatgca 2646 Query: 333 tccgg 337 ||||| Sbjct: 2647 tccgg 2651 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 342 gcagtgatcactgtgatgctggttaccacattcctgacatcccttgtgatcatggtgtgc 401 ||||||||||| ||||||||||| || |||| |||||||||| | ||||||||| |||| Sbjct: 2841 gcagtgatcacggtgatgctggtgacgacatgcctgacatccttggtgatcatgctgtgt 2900 Query: 402 tggcac 407 |||||| Sbjct: 2901 tggcac 2906
>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1409_C08 Length = 90673 Score = 216 bits (109), Expect = 5e-53 Identities = 211/245 (86%) Strand = Plus / Minus Query: 93 tggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatcagc 152 |||||||| ||||| ||||| ||| |||| || || || |||||||||||||||||||| Sbjct: 65123 tggcctgtgcttgtgctggcaattttggcatcggtcgtcggaagccaagcaatcatcagt 65064 Query: 153 ggaacattctcgataatcaatcagagtcagtccctaagctgcttccctagggtaaaagtt 212 ||||||||||| || ||||| ||||| ||||| || || |||||||| || || ||||| Sbjct: 65063 ggaacattctccatcatcaaccagagccagtcactcagttgcttcccaagagtgaaagtg 65004 Query: 213 gtacacacatctgagaaaattcatggccagatatacatccctgagatcaactggctactc 272 || |||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 65003 gtgcacacatctgagaatatccatggccagatttacatccctgagatcaactggctgctc 64944 Query: 273 atgatcctctgcattgctgtgactgttggatttagagacactaagcacatgggaaacgca 332 ||| |||||||||||||||||||||| || ||| | || || ||||| |||||||| ||| Sbjct: 64943 atggtcctctgcattgctgtgactgtcggttttcgcgataccaagcatatgggaaatgca 64884 Query: 333 tccgg 337 ||||| Sbjct: 64883 tccgg 64879 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 342 gcagtgatcactgtgatgctggttaccacattcctgacatcccttgtgatcatggtgtgc 401 ||||||||||| ||||||||||| || |||| |||||||||| | ||||||||| |||| Sbjct: 64689 gcagtgatcacggtgatgctggtgacgacatgcctgacatccttggtgatcatgctgtgt 64630 Query: 402 tggcac 407 |||||| Sbjct: 64629 tggcac 64624
>gb|AF367865.1| Mesembryanthemum crystallinum potassium transporter HAK2p (HAK2) mRNA, complete cds Length = 2723 Score = 117 bits (59), Expect = 4e-23 Identities = 203/251 (80%) Strand = Plus / Plus Query: 114 attctggcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaat 173 ||||| ||||||||||||||||| ||||||||||| || || |||||||| || || || Sbjct: 1244 attcttgcttcagttgttggaagtcaagcaatcataagtgggacattctctatcattaac 1303 Query: 174 cagagtcagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaatt 233 || ||||| || || | |||||||| | || ||||| || || || ||||| || || Sbjct: 1304 caaagtcaatcacttggttgcttcccccgagtcaaagtcgttcatacttctgataagatc 1363 Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 || || ||||| ||||||||||||||||||||| |||| |||||||| || |||||||| Sbjct: 1364 cacggtcagatctacatccctgagatcaactggatactgatgatcctttgtattgctgtt 1423 Query: 294 actgttggatttagagacactaagcacatgggaaacgcatccggactagcagtgatcact 353 ||| ||||||||||||| || || ||| | ||||| ||||| || ||||||| || || Sbjct: 1424 actattggatttagagatacaaaacacctaggaaatgcatcaggtttagcagttatgaca 1483 Query: 354 gtgatgctggt 364 || |||||||| Sbjct: 1484 gttatgctggt 1494 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 3 atgggtcaggcagcttacttgtcaaagcatcatga 37 |||||||| || ||||||||||||||||||||||| Sbjct: 1139 atgggtcaagctgcttacttgtcaaagcatcatga 1173
>ref|NM_129616.3| Arabidopsis thaliana KT2 (POTASSIUM TRANSPORTER 2); potassium ion transporter AT2G40540 (KT2) mRNA, complete cds Length = 2673 Score = 73.8 bits (37), Expect = 5e-10 Identities = 157/197 (79%) Strand = Plus / Plus Query: 114 attctggcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaat 173 ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || || || Sbjct: 1261 attcttgcttctgttgtgggaagccaagcgatcatcagtgggactttctcaatcataaac 1320 Query: 174 cagagtcagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaatt 233 ||||| ||||| || | ||||||||| | || ||||| | ||||| || || || || Sbjct: 1321 cagagccagtctctcggatgcttccctcgagtcaaagtcattcacacgtccgataagatg 1380 Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 ||||| ||||| ||||| || ||||| |||||| | |||||||| |||||||| ||||| Sbjct: 1381 catggtcagatttacataccggagattaactggatgctcatgattctctgcatcgctgtt 1440 Query: 294 actgttggatttagaga 310 ||| | || |||||||| Sbjct: 1441 actatcgggtttagaga 1457
>gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete sequence Length = 84675 Score = 73.8 bits (37), Expect = 5e-10 Identities = 157/197 (79%) Strand = Plus / Minus Query: 114 attctggcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaat 173 ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || || || Sbjct: 30161 attcttgcttctgttgtgggaagccaagcgatcatcagtgggactttctcaatcataaac 30102 Query: 174 cagagtcagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaatt 233 ||||| ||||| || | ||||||||| | || ||||| | ||||| || || || || Sbjct: 30101 cagagccagtctctcggatgcttccctcgagtcaaagtcattcacacgtccgataagatg 30042 Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 ||||| ||||| ||||| || ||||| |||||| | |||||||| |||||||| ||||| Sbjct: 30041 catggtcagatttacataccggagattaactggatgctcatgattctctgcatcgctgtt 29982 Query: 294 actgttggatttagaga 310 ||| | || |||||||| Sbjct: 29981 actatcgggtttagaga 29965
>gb|BT005048.1| Arabidopsis thaliana clone U20444 putative potassium transporter (At2g40540) mRNA, complete cds Length = 2416 Score = 73.8 bits (37), Expect = 5e-10 Identities = 157/197 (79%) Strand = Plus / Plus Query: 114 attctggcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaat 173 ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || || || Sbjct: 1045 attcttgcttctgttgtgggaagccaagcgatcatcagtgggactttctcaatcataaac 1104 Query: 174 cagagtcagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaatt 233 ||||| ||||| || | ||||||||| | || ||||| | ||||| || || || || Sbjct: 1105 cagagccagtctctcggatgcttccctcgagtcaaagtcattcacacgtccgataagatg 1164 Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 ||||| ||||| ||||| || ||||| |||||| | |||||||| |||||||| ||||| Sbjct: 1165 catggtcagatttacataccggagattaactggatgctcatgattctctgcatcgctgtt 1224 Query: 294 actgttggatttagaga 310 ||| | || |||||||| Sbjct: 1225 actatcgggtttagaga 1241
>gb|BT004049.1| Arabidopsis thaliana clone RAFL15-06-F06 (R20444) putative potassium transporter (At2g40540) mRNA, complete cds Length = 2642 Score = 73.8 bits (37), Expect = 5e-10 Identities = 157/197 (79%) Strand = Plus / Plus Query: 114 attctggcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaat 173 ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || || || Sbjct: 1215 attcttgcttctgttgtgggaagccaagcgatcatcagtgggactttctcaatcataaac 1274 Query: 174 cagagtcagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaatt 233 ||||| ||||| || | ||||||||| | || ||||| | ||||| || || || || Sbjct: 1275 cagagccagtctctcggatgcttccctcgagtcaaagtcattcacacgtccgataagatg 1334 Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 ||||| ||||| ||||| || ||||| |||||| | |||||||| |||||||| ||||| Sbjct: 1335 catggtcagatttacataccggagattaactggatgctcatgattctctgcatcgctgtt 1394 Query: 294 actgttggatttagaga 310 ||| | || |||||||| Sbjct: 1395 actatcgggtttagaga 1411
>gb|AF012657.1|AF012657 Arabidopsis thaliana putative potassium transporter AtKT2p (AtKT2) mRNA, complete cds Length = 2451 Score = 73.8 bits (37), Expect = 5e-10 Identities = 157/197 (79%) Strand = Plus / Plus Query: 114 attctggcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaat 173 ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || || || Sbjct: 1048 attcttgcttctgttgtgggaagccaagcgatcatcagtgggactttctcaatcataaac 1107 Query: 174 cagagtcagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaatt 233 ||||| ||||| || | ||||||||| | || ||||| | ||||| || || || || Sbjct: 1108 cagagccagtctctcggatgcttccctcgagtcaaagtcattcacacgtccgataagatg 1167 Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 ||||| ||||| ||||| || ||||| |||||| | |||||||| |||||||| ||||| Sbjct: 1168 catggtcagatttacataccggagattaactggatgctcatgattctctgcatcgctgtt 1227 Query: 294 actgttggatttagaga 310 ||| | || |||||||| Sbjct: 1228 actatcgggtttagaga 1244
>emb|BX820404.1|CNS0AAF2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH2ZB07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1812 Score = 67.9 bits (34), Expect = 3e-08 Identities = 156/197 (79%) Strand = Plus / Plus Query: 114 attctggcttcagttgttggaagccaagcaatcatcagcggaacattctcgataatcaat 173 ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || || || Sbjct: 1205 attcttgcttctgttgtgggaagccaagcgatcatcagtgggactttctcaatcataaac 1264 Query: 174 cagagtcagtccctaagctgcttccctagggtaaaagttgtacacacatctgagaaaatt 233 ||||| ||||| || | ||||||||| | || | ||| | ||||| || || || || Sbjct: 1265 cagagccagtctctcggatgcttccctcgagtcanagtcattcacacgtccgataagatg 1324 Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 ||||| ||||| ||||| || ||||| |||||| | |||||||| |||||||| ||||| Sbjct: 1325 catggtcagatttacataccggagattaactggatgctcatgattctctgcatcgctgtt 1384 Query: 294 actgttggatttagaga 310 ||| | || |||||||| Sbjct: 1385 actatcgggtttagaga 1401
>ref|NM_105698.4| Arabidopsis thaliana KUP6; potassium ion transporter AT1G70300 (KUP6) mRNA, complete cds Length = 2859 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 90 agatggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatc 149 |||||||| |||||||| | ||||| || ||| | || |||||||| |||||||||||| Sbjct: 1430 agatggccagttcttgtgatcgctatactcgctgctgtagttggaagtcaagcaatcatc 1489 Query: 150 agcggaacattctcgataatcaa 172 | |||||||||||||| ||||| Sbjct: 1490 acaggaacattctcgatcatcaa 1512
>gb|AY093328.1| Arabidopsis thaliana similar to high affinity potassium transporter (At1g70300) mRNA, complete cds Length = 2389 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 90 agatggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatc 149 |||||||| |||||||| | ||||| || ||| | || |||||||| |||||||||||| Sbjct: 1033 agatggccagttcttgtgatcgctatactcgctgctgtagttggaagtcaagcaatcatc 1092 Query: 150 agcggaacattctcgataatcaa 172 | |||||||||||||| ||||| Sbjct: 1093 acaggaacattctcgatcatcaa 1115
>gb|AY062542.1| Arabidopsis thaliana Similar to high affinity potassium transporter (At1g70300; F17O7.17) mRNA, complete cds Length = 2492 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 90 agatggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatc 149 |||||||| |||||||| | ||||| || ||| | || |||||||| |||||||||||| Sbjct: 1125 agatggccagttcttgtgatcgctatactcgctgctgtagttggaagtcaagcaatcatc 1184 Query: 150 agcggaacattctcgataatcaa 172 | |||||||||||||| ||||| Sbjct: 1185 acaggaacattctcgatcatcaa 1207
>emb|BX816687.1|CNS0AELU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH62ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2746 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 90 agatggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatc 149 |||||||| |||||||| | ||||| || ||| | || |||||||| |||||||||||| Sbjct: 1297 agatggccagttcttgtgatcgctatactcgctgctgtagttggaagtcaagcaatcatc 1356 Query: 150 agcggaacattctcgataatcaa 172 | |||||||||||||| ||||| Sbjct: 1357 acaggaacattctcgatcatcaa 1379
>gb|AC003671.1|F17O7 Arabidopsis thaliana chromosome 1 BAC F17O7 complete sequence Length = 92128 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 90 agatggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatcatc 149 |||||||| |||||||| | ||||| || ||| | || |||||||| |||||||||||| Sbjct: 75215 agatggccagttcttgtgatcgctatactcgctgctgtagttggaagtcaagcaatcatc 75274 Query: 150 agcggaacattctcgataatcaa 172 | |||||||||||||| ||||| Sbjct: 75275 acaggaacattctcgatcatcaa 75297
>emb|CT954231.1| Medicago truncatula chromosome 5 clone mth2-166e2, COMPLETE SEQUENCE Length = 122895 Score = 54.0 bits (27), Expect = 4e-04 Identities = 150/191 (78%) Strand = Plus / Minus Query: 88 tgagatggcctgttcttgtactggctattctggcttcagttgttggaagccaagcaatca 147 |||||||||||||||| || || ||| | | ||| | ||||||||||||||||| |||| Sbjct: 46690 tgagatggcctgttctggtgcttgctgtatttgctgctgttgttggaagccaagccatca 46631 Query: 148 tcagcggaacattctcgataatcaatcagagtcagtccctaagctgcttccctagggtaa 207 | | ||||||||||| || ||||| || || | ||| |||||||| || || | Sbjct: 46630 taactggaacattctcaattatcaagcaatgttctgcattaaattgcttcccaagagtta 46571 Query: 208 aagttgtacacacatctgagaaaattcatggccagatatacatccctgagatcaactggc 267 |||| || |||||||| |||||||| || |||||||| |||||||||||||| |||| Sbjct: 46570 aagtggttcacacatcatccaaaattcacgggcagatatatatccctgagatcaattggc 46511 Query: 268 tactcatgatc 278 || | |||||| Sbjct: 46510 tattgatgatc 46500
>ref|NM_118495.2| Arabidopsis thaliana TRH1 (TINY ROOT HAIR 1); potassium ion transporter AT4G23640 (TRH1) mRNA, complete cds Length = 2830 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 236 tggccagatatacatccctgagatcaactggctactcatgatcctc 281 ||||||||| ||||||||||||||||| ||| | ||||||||||| Sbjct: 1306 tggccagatttacatccctgagatcaattgggttgtcatgatcctc 1351
>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59 Length = 199199 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 236 tggccagatatacatccctgagatcaactggctactcatgatcctc 281 ||||||||| ||||||||||||||||| ||| | ||||||||||| Sbjct: 175330 tggccagatttacatccctgagatcaattgggttgtcatgatcctc 175285
>emb|AL035394.1|ATF9D16 Arabidopsis thaliana DNA chromosome 4, BAC clone F9D16 (ESSAII project) Length = 119430 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 236 tggccagatatacatccctgagatcaactggctactcatgatcctc 281 ||||||||| ||||||||||||||||| ||| | ||||||||||| Sbjct: 39540 tggccagatttacatccctgagatcaattgggttgtcatgatcctc 39495
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgc 289 ||||| ||||||||||| ||||||||| |||| ||||| || |||||||| Sbjct: 6203143 cagatttacatccctgacatcaactgggtacttatgattctttgcattgc 6203192
>emb|BX827862.1|CNS0A4B9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH28ZE08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2535 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 236 tggccagatatacatccctgagatcaactggctactcatgatcctc 281 ||||||||| ||||||||||||||||| ||| | ||||||||||| Sbjct: 1267 tggccagatttacatccctgagatcaattgggttgtcatgatcctc 1312
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgc 289 ||||| ||||||||||| ||||||||| |||| ||||| || |||||||| Sbjct: 66536 cagatttacatccctgacatcaactgggtacttatgattctttgcattgc 66585
>emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative potasium transporter, exons 1-9 Length = 5418 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgc 289 ||||| ||||||||||| ||||||||| |||| ||||| || |||||||| Sbjct: 3238 cagatttacatccctgacatcaactgggtacttatgattctttgcattgc 3287
>emb|AJ296156.1|ATH296156 Arabidopsis thaliana trh1 gene for tiny root hair 1 protein, exons 1-9 Length = 4200 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 236 tggccagatatacatccctgagatcaactggctactcatgatcctc 281 ||||||||| ||||||||||||||||| ||| | ||||||||||| Sbjct: 2843 tggccagatttacatccctgagatcaattgggttgtcatgatcctc 2888
>emb|AJ296155.1|ATH296155 Arabidopsis thaliana mRNA for tiny root hair 1 protein (trh1 gene) Length = 2590 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 236 tggccagatatacatccctgagatcaactggctactcatgatcctc 281 ||||||||| ||||||||||||||||| ||| | ||||||||||| Sbjct: 1279 tggccagatttacatccctgagatcaattgggttgtcatgatcctc 1324
>dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J20, full insert sequence Length = 3200 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgc 289 ||||| ||||||||||| ||||||||| |||| ||||| || |||||||| Sbjct: 1801 cagatttacatccctgacatcaactgggtacttatgattctttgcattgc 1850
>ref|NM_121492.1| Arabidopsis thaliana potassium ion transporter AT5G14880 mRNA, complete cds Length = 2346 Score = 50.1 bits (25), Expect = 0.007 Identities = 112/141 (79%) Strand = Plus / Plus Query: 126 gttgttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagtcagtcc 185 ||||||||||| || ||||| |||| |||||||||||||| ||||| || || || Sbjct: 1069 gttgttggaagtcaggcaataatcacaggaacattctcgatcatcaagcaatgtacttct 1128 Query: 186 ctaagctgcttccctagggtaaaagttgtacacacatctgagaaaattcatggccagata 245 ||| | |||||||| | || ||| | |||||||| || || ||| ||||| |||||| Sbjct: 1129 ctaggttgcttcccaaaagtcaaaatcgtacacacttcgtcgagaatgcatggtcagata 1188 Query: 246 tacatccctgagatcaactgg 266 || |||||||||||||||||| Sbjct: 1189 tatatccctgagatcaactgg 1209
>emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project) Length = 85992 Score = 50.1 bits (25), Expect = 0.007 Identities = 112/141 (79%) Strand = Plus / Plus Query: 126 gttgttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagtcagtcc 185 ||||||||||| || ||||| |||| |||||||||||||| ||||| || || || Sbjct: 1035 gttgttggaagtcaggcaataatcacaggaacattctcgatcatcaagcaatgtacttct 1094 Query: 186 ctaagctgcttccctagggtaaaagttgtacacacatctgagaaaattcatggccagata 245 ||| | |||||||| | || ||| | |||||||| || || ||| ||||| |||||| Sbjct: 1095 ctaggttgcttcccaaaagtcaaaatcgtacacacttcgtcgagaatgcatggtcagata 1154 Query: 246 tacatccctgagatcaactgg 266 || |||||||||||||||||| Sbjct: 1155 tatatccctgagatcaactgg 1175
>emb|AL391149.1|ATT9L3 Arabidopsis thaliana DNA chromosome 5, BAC clone T9L3 (ESSA project) Length = 89370 Score = 50.1 bits (25), Expect = 0.007 Identities = 112/141 (79%) Strand = Plus / Plus Query: 126 gttgttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagtcagtcc 185 ||||||||||| || ||||| |||| |||||||||||||| ||||| || || || Sbjct: 83405 gttgttggaagtcaggcaataatcacaggaacattctcgatcatcaagcaatgtacttct 83464 Query: 186 ctaagctgcttccctagggtaaaagttgtacacacatctgagaaaattcatggccagata 245 ||| | |||||||| | || ||| | |||||||| || || ||| ||||| |||||| Sbjct: 83465 ctaggttgcttcccaaaagtcaaaatcgtacacacttcgtcgagaatgcatggtcagata 83524 Query: 246 tacatccctgagatcaactgg 266 || |||||||||||||||||| Sbjct: 83525 tatatccctgagatcaactgg 83545
>gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, complete sequence Length = 185272 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 419 gcttgccctgggcttcctcctct 441 ||||||||||||||||||||||| Sbjct: 185208 gcttgccctgggcttcctcctct 185230
>gb|AC018643.3|AC018643 Human Chromosome 7 clone RP11-297N5, complete sequence Length = 198470 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 419 gcttgccctgggcttcctcctct 441 ||||||||||||||||||||||| Sbjct: 62584 gcttgccctgggcttcctcctct 62606
>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15, complete sequence Length = 179357 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 52 ctcaagttggattttacatcgcagtt 77 |||| ||||||||||||||||||||| Sbjct: 74830 ctcatgttggattttacatcgcagtt 74805
>ref|XM_971262.1| PREDICTED: Tribolium castaneum hypothetical protein LOC660731 (LOC660731), mRNA Length = 1656 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 425 cctgggcttcctcctcttcttc 446 |||||||||||||||||||||| Sbjct: 1587 cctgggcttcctcctcttcttc 1566
>dbj|AB256661.1| Phragmites australis PhaHAK3 mRNA for potassium transporter, complete cds, strain: Enchi Length = 2251 Score = 44.1 bits (22), Expect = 0.42 Identities = 43/50 (86%) Strand = Plus / Plus Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctg 283 ||||||||||| ||||| |||||||| |||||| | || ||| ||||||| Sbjct: 999 catggccagatttacatacctgagattaactggattctaatggtcctctg 1048
>dbj|AB256660.1| Phragmites australis PhaHAK3 mRNA for potassium transporter, complete cds, strain: Nanpi Length = 2423 Score = 44.1 bits (22), Expect = 0.42 Identities = 43/50 (86%) Strand = Plus / Plus Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctg 283 ||||||||||| ||||| |||||||| |||||| | || ||| ||||||| Sbjct: 1171 catggccagatttacatacctgagattaactggattctaatggtcctctg 1220
>dbj|AB256659.1| Phragmites australis PhaHAK3 mRNA for potassium transporter, complete cds, strain: Utsunomiya Length = 2431 Score = 44.1 bits (22), Expect = 0.42 Identities = 43/50 (86%) Strand = Plus / Plus Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctg 283 ||||||||||| ||||| |||||||| |||||| | || ||| ||||||| Sbjct: 1177 catggccagatttacatacctgagattaactggattctaatggtcctctg 1226
>ref|XM_473875.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2217 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 ||||| ||||||||||| ||||| ||| | || | || || |||||||||||||||| | Sbjct: 1072 cagatctacatccctgacatcaattgggtccttctaattctttgcattgctgtgactgct 1131 Query: 300 ggatt 304 ||||| Sbjct: 1132 ggatt 1136
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Minus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 ||||| ||||||||||| ||||| ||| | || | || || |||||||||||||||| | Sbjct: 146087 cagatctacatccctgacatcaattgggtccttctaattctttgcattgctgtgactgct 146028 Query: 300 ggatt 304 ||||| Sbjct: 146027 ggatt 146023
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Minus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 ||||| ||||||||||| ||||| ||| | || | || || |||||||||||||||| | Sbjct: 31164006 cagatctacatccctgacatcaattgggtccttctaattctttgcattgctgtgactgct 31163947 Query: 300 ggatt 304 ||||| Sbjct: 31163946 ggatt 31163942
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.7 Identities = 51/61 (83%) Strand = Plus / Minus Query: 237 ggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgact 296 ||||||||||||| |||||| || |||||| | |||||| | ||||||| ||||| ||| Sbjct: 22067820 ggccagatatacagccctgatattaactggatcctcatggttttctgcatagctgtcact 22067761 Query: 297 g 297 | Sbjct: 22067760 g 22067760
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 63/77 (81%) Strand = Plus / Minus Query: 129 gttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagtcagtcccta 188 ||||| ||||||||||| |||| || || ||||| || ||||| ||| || |||| || Sbjct: 9046227 gttggcagccaagcaattatcactgggactttctcaattatcaagcagtgttcgtcctta 9046168 Query: 189 agctgcttccctagggt 205 | ||||||||||||||| Sbjct: 9046167 aactgcttccctagggt 9046151
>emb|BX827906.1|CNS0A3QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH33ZF01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1372 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 tggccagatatacatccctgagatc 260 ||||||||| ||||||||||||||| Sbjct: 107 tggccagatttacatccctgagatc 131
>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0084K06 Length = 177895 Score = 42.1 bits (21), Expect = 1.7 Identities = 63/77 (81%) Strand = Plus / Minus Query: 129 gttggaagccaagcaatcatcagcggaacattctcgataatcaatcagagtcagtcccta 188 ||||| ||||||||||| |||| || || ||||| || ||||| ||| || |||| || Sbjct: 93545 gttggcagccaagcaattatcactgggactttctcaattatcaagcagtgttcgtcctta 93486 Query: 189 agctgcttccctagggt 205 | ||||||||||||||| Sbjct: 93485 aactgcttccctagggt 93469
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 42.1 bits (21), Expect = 1.7 Identities = 51/61 (83%) Strand = Plus / Minus Query: 237 ggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgact 296 ||||||||||||| |||||| || |||||| | |||||| | ||||||| ||||| ||| Sbjct: 109884 ggccagatatacagccctgatattaactggatcctcatggttttctgcatagctgtcact 109825 Query: 297 g 297 | Sbjct: 109824 g 109824
>emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative potasium transporter, exons 1-9 Length = 4562 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 ||||| ||||||||||| ||||| ||| | || | || || |||||||||||||||| | Sbjct: 2507 cagatctacatccctgacatcaattgggtccttctaattctttgcattgctgtgactgct 2566 Query: 300 ggatt 304 ||||| Sbjct: 2567 ggatt 2571
>emb|AJ427292.1|CNO427292 Cymodocea nodosa mRNA for putative potassium transporter (hak1 gene) Length = 2403 Score = 42.1 bits (21), Expect = 1.7 Identities = 129/165 (78%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 ||||| ||| |||| |||||||||||| | || |||| || ||| ||||||| || || Sbjct: 1220 cagatctacgtcccagagatcaactggatccttatgactctgtgccttgctgttaccatt 1279 Query: 300 ggatttagagacactaagcacatgggaaacgcatccggactagcagtgatcactgtgatg 359 |||||| ||||||| |||| | |||| || || | || | || |||||||| |||||| Sbjct: 1280 ggatttcgagacacaaagcgcttgggcaatgcggctgggttggcggtgatcacggtgatg 1339 Query: 360 ctggttaccacattcctgacatcccttgtgatcatggtgtgctgg 404 ||||| ||||| | ||||| || || |||||| || |||||||| Sbjct: 1340 ctggtgaccacctgcctgatgtctctggtgatcgtgctgtgctgg 1384
>dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K08, full insert sequence Length = 3453 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Plus Query: 240 cagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgactgtt 299 ||||| ||||||||||| ||||| ||| | || | || || |||||||||||||||| | Sbjct: 2099 cagatctacatccctgacatcaattgggtccttctaattctttgcattgctgtgactgct 2158 Query: 300 ggatt 304 ||||| Sbjct: 2159 ggatt 2163
>dbj|AK065464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020H24, full insert sequence Length = 2893 Score = 42.1 bits (21), Expect = 1.7 Identities = 51/61 (83%) Strand = Plus / Plus Query: 237 ggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtgact 296 ||||||||||||| |||||| || |||||| | |||||| | ||||||| ||||| ||| Sbjct: 1667 ggccagatatacagccctgatattaactggatcctcatggttttctgcatagctgtcact 1726 Query: 297 g 297 | Sbjct: 1727 g 1727
>gb|AC117547.19| Mus musculus chromosome 1, clone RP23-221M20, complete sequence Length = 195598 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tgggcttcctcctcttcttc 446 |||||||||||||||||||| Sbjct: 107435 tgggcttcctcctcttcttc 107454
>gb|AC140194.2| Mus musculus BAC clone RP23-250K1 from chromosome 16, complete sequence Length = 183155 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gctattctggcttcagttgt 130 |||||||||||||||||||| Sbjct: 64260 gctattctggcttcagttgt 64279
>ref|XM_823922.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.1270) partial mRNA Length = 1551 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gcttcctcctcttcttcggt 449 |||||||||||||||||||| Sbjct: 176 gcttcctcctcttcttcggt 157
>gb|AC122344.3| Mus musculus BAC clone RP23-364M19 from chromosome 9, complete sequence Length = 209165 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 gagaaaattcatggccagatatac 248 ||||||||||| |||||||||||| Sbjct: 77726 gagaaaattcaaggccagatatac 77749
>emb|AL136450.8| Human DNA sequence from clone RP3-510O21 on chromosome Xq25-26.1 Contains the 3' end of a novel gene (FLJ11362), the 3' end of the ELF4 gene for E74-like factor 4 (ets domain transcription factor) (MEF, ELFR) and a CpG island, complete sequence Length = 43480 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cagataaggtgagatggcct 98 |||||||||||||||||||| Sbjct: 3126 cagataaggtgagatggcct 3145
>gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence Length = 164663 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ctctgcattgctgtgactgt 298 |||||||||||||||||||| Sbjct: 52154 ctctgcattgctgtgactgt 52135
>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence Length = 164668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 cacattcctgacatcccttg 387 |||||||||||||||||||| Sbjct: 131550 cacattcctgacatcccttg 131531
>gb|AC138582.22| Pan troglodytes clone rp43-21p1, complete sequence Length = 119613 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tccctaagctgcttccctagggta 206 |||||||||||||||||| ||||| Sbjct: 80305 tccctaagctgcttccctggggta 80282
>gb|AC092436.5| Homo sapiens BAC clone RP11-302F12 from 4, complete sequence Length = 202133 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 tgccctgggcttcctcctct 441 |||||||||||||||||||| Sbjct: 65992 tgccctgggcttcctcctct 66011
>gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 In GNAZ-BCR Region, complete sequence Length = 142979 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tccctaagctgcttccctagggta 206 |||||||||||||||||| ||||| Sbjct: 128209 tccctaagctgcttccctggggta 128186
>emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in linkage group 12, complete sequence Length = 171920 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 cattgctgtgactgttggatttag 307 |||||||||||||||||| ||||| Sbjct: 128961 cattgctgtgactgttgggtttag 128938
>gb|AY106319.1| Zea mays PCO115789 mRNA sequence Length = 1573 Score = 40.1 bits (20), Expect = 6.6 Identities = 65/80 (81%) Strand = Plus / Plus Query: 234 catggccagatatacatccctgagatcaactggctactcatgatcctctgcattgctgtg 293 ||||| ||||||||||| || || ||||| ||| | || ||||| |||||| | ||||| Sbjct: 224 catggtcagatatacataccagaaatcaattggatgctgatgatactctgcctggctgtt 283 Query: 294 actgttggatttagagacac 313 ||| |||| || |||||||| Sbjct: 284 actattggtttcagagacac 303
>emb|Z78065.1|CET09E8 Caenorhabditis elegans Cosmid T09E8, complete sequence Length = 18351 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 gttgtacacacatctgagaaaatt 233 |||||| ||||||||||||||||| Sbjct: 12935 gttgtatacacatctgagaaaatt 12958
>dbj|AP006104.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10H09, TM0189, complete sequence Length = 92745 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gcatcatgacttttactcaa 48 |||||||||||||||||||| Sbjct: 70416 gcatcatgacttttactcaa 70435
>dbj|AP004520.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT05P01, TM0048, complete sequence Length = 110811 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 tttactcaaactctcaagtt 59 |||||||||||||||||||| Sbjct: 95194 tttactcaaactctcaagtt 95175
>emb|AL645928.9| Mouse DNA sequence from clone RP23-185J21 on chromosome 11, complete sequence Length = 158913 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 gctgtgactgttggatttagagac 311 ||||||||||||| |||||||||| Sbjct: 65260 gctgtgactgttgcatttagagac 65283 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,293,304 Number of Sequences: 3902068 Number of extensions: 4293304 Number of successful extensions: 100969 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 100598 Number of HSP's gapped (non-prelim): 367 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)