ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast57c06 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 32.0 bits (71), Expect = 0.67 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = -2 Query: 428 EGRGEGGLCDGALRGVERVAIGRDLLEARRERGHLAAPLD 309 EGR EG ALRG++R R +E RE GHL D Sbjct: 297 EGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEED 336
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 32.0 bits (71), Expect = 0.67 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = -2 Query: 428 EGRGEGGLCDGALRGVERVAIGRDLLEARRERGHLAAPLD 309 EGR EG ALRG++R R +E RE GHL D Sbjct: 297 EGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEED 336
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 32.0 bits (71), Expect = 0.67 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = -2 Query: 428 EGRGEGGLCDGALRGVERVAIGRDLLEARRERGHLAAPLD 309 EGR EG ALRG++R R +E RE GHL D Sbjct: 297 EGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEED 336
>DC1I1_RAT (Q63100) Cytoplasmic dynein 1 intermediate chain 1 (Dynein| intermediate chain 1, cytosolic) (DH IC-1) (Cytoplasmic dynein intermediate chain 1) Length = 643 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 222 MEEKRDSSPERDRKAQQLKTLNSMLLKEAVERRGQVAALTARLEEIPADGD 374 M +K D E +RK Q+L + ++ ER+ + A + + E +P D D Sbjct: 1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSD 51
>CTAG2_HUMAN (O75638) Cancer/testis antigen 2 (L antigen family member 1)| (LAGE-1 protein) (ESO-2 protein) Length = 210 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = +2 Query: 203 PGAGAGDGGEARLIAGAGPEGAAAQDA 283 PG AG GEA G GP GA A A Sbjct: 27 PGGNAGGPGEAGATGGRGPRGAGAARA 53
>CU20_MANSE (Q8T635) Pupal cuticle protein 20 precursor (MsCP20) (MS-PCP20)| Length = 200 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = +2 Query: 206 GAGAGDGGEARLIAGAGPEGAAA 274 G GAG GG A L GAG GA A Sbjct: 35 GGGAGSGGNAGLGGGAGGSGAGA 57
>CTG1B_HUMAN (P78358) Cancer/testis antigen 1B (L antigen family member 2)| (LAGE-2 protein) (Autoimmunogenic cancer/testis antigen NY-ESO-1) Length = 180 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = +2 Query: 203 PGAGAGDGGEARLIAGAGPEGAAAQDA 283 PG AG GEA G GP GA A A Sbjct: 27 PGGNAGGPGEAGATGGRGPRGAGAARA 53
>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)| Length = 485 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 361 LPMATRSTPRSAPSHKPPSPRPSAP 435 LP + + T S P PPSPRP +P Sbjct: 229 LPPSPQPTASSRPPSPPPSPRPPSP 253
>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)| Length = 641 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +1 Query: 361 LPMATRSTPRSAPSHKPPSPRPSAP 435 LP+ PR P KPP P P P Sbjct: 183 LPLLGHGVPRLPPGRKPPGPPPGPP 207
>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)| Length = 641 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +1 Query: 361 LPMATRSTPRSAPSHKPPSPRPSAP 435 LP+ PR P KPP P P P Sbjct: 183 LPLLGHGVPRLPPGRKPPGPPPGPP 207
>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding| protein SNP70) (Npw38-binding protein) (NpwBP) Length = 641 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +1 Query: 361 LPMATRSTPRSAPSHKPPSPRPSAP 435 LP+ PR P KPP P P P Sbjct: 183 LPLLGHGVPRLPPGRKPPGPPPGPP 207
>SYA_BRUSU (P67009) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 885 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 212 GAGDGGEARLIAGAGPEGAAAQDA 283 GAG GG + GP+GA A DA Sbjct: 853 GAGGGGRPDMAQAGGPDGAKAADA 876
>SYA_BRUME (P67008) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 885 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 212 GAGDGGEARLIAGAGPEGAAAQDA 283 GAG GG + GP+GA A DA Sbjct: 853 GAGGGGRPDMAQAGGPDGAKAADA 876
>SYA_BRUAB (Q57CU0) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 885 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 212 GAGDGGEARLIAGAGPEGAAAQDA 283 GAG GG + GP+GA A DA Sbjct: 853 GAGGGGRPDMAQAGGPDGAKAADA 876
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +1 Query: 376 RSTPRSAPSHKPPSPRPSAP 435 R TP AP+ PP P PS P Sbjct: 742 RGTPPPAPARDPPPPAPSPP 761
>COPD_CAEEL (Q09236) Probable coatomer subunit delta (Delta-coat protein)| (Delta-COP) Length = 515 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 367 MATRSTPRSAPSHKPPSPRPSAP 435 +++ STP +A +P +PRPSAP Sbjct: 194 ISSSSTPNAAAVSEPAAPRPSAP 216
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Frame = +1 Query: 379 STPR-SAPSHKPPSPRPSAP 435 +TP SAPS PP+P PSAP Sbjct: 99 ATPEPSAPSAPPPAPEPSAP 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,814,565 Number of Sequences: 219361 Number of extensions: 288682 Number of successful extensions: 3898 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3746 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
