ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast57b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ175954.1| Hordeum vulgare subsp. vulgare clone 39-13A-RB fl... 50 0.006
2emb|AL133240.4|CNS01DUD Human chromosome 14 DNA sequence BAC R-6... 42 1.5
3gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.9
4gb|AC104985.3| Homo sapiens chromosome 18, clone RP11-379L18, co... 40 5.9
5gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, co... 40 5.9
6emb|BX321885.11| Zebrafish DNA sequence from clone CH211-240L19 ... 40 5.9

>gb|DQ175954.1| Hordeum vulgare subsp. vulgare clone 39-13A-RB flanking T-DNA
           insertion sequence
          Length = 787

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 168 gcccgacatgcgcgtaccgggcgcatggcggctgagc 204
           ||||| |||||| ||||||||| ||||||||||||||
Sbjct: 627 gcccgtcatgcgtgtaccgggcacatggcggctgagc 663



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>emb|AL133240.4|CNS01DUD Human chromosome 14 DNA sequence BAC R-639F2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196853

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    ccaccttcttcccacctcctt 37
             |||||||||||||||||||||
Sbjct: 93610 ccaccttcttcccacctcctt 93630



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 113     gctcgttccacgagcggcaggcgc 136
               |||||| |||||||||||||||||
Sbjct: 2609644 gctcgtgccacgagcggcaggcgc 2609667



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>gb|AC104985.3| Homo sapiens chromosome 18, clone RP11-379L18, complete sequence
          Length = 172187

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     cttcttcccacctccttgtt 40
              ||||||||||||||||||||
Sbjct: 132978 cttcttcccacctccttgtt 132959



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>gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, complete sequence
          Length = 171501

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   cttcttcccacctccttgtt 40
            ||||||||||||||||||||
Sbjct: 2742 cttcttcccacctccttgtt 2723



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>emb|BX321885.11| Zebrafish DNA sequence from clone CH211-240L19 in linkage group 4,
             complete sequence
          Length = 155649

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tggcctacggcttcggtcac 111
             ||||||||||||||||||||
Sbjct: 93517 tggcctacggcttcggtcac 93536


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,316,543
Number of Sequences: 3902068
Number of extensions: 2316543
Number of successful extensions: 40362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40314
Number of HSP's gapped (non-prelim): 48
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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