ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast57b10 |
|---|---|
| Clone Library Name | barley_pub |
>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase| Length = 407 Score = 115 bits (287), Expect = 6e-26 Identities = 54/72 (75%), Positives = 61/72 (84%) Frame = +3 Query: 216 ETVLIERKMDNCKPCGGAIPLCMVSEFDLPLDLVDRRVTKMKMISPSNVAVDIGRTLAPH 395 ET L ERK+DN KPCGGAIPLCMV EFDLP +++DRRV KMKMISPSN+ V+IG+TL Sbjct: 27 ETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIGQTLKDD 86 Query: 396 EYIGMVRREVLD 431 EYIGM RREVLD Sbjct: 87 EYIGMCRREVLD 98
>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase| Length = 391 Score = 50.8 bits (120), Expect = 1e-06 Identities = 26/61 (42%), Positives = 39/61 (63%) Frame = +3 Query: 252 KPCGGAIPLCMVSEFDLPLDLVDRRVTKMKMISPSNVAVDIGRTLAPHEYIGMVRREVLD 431 KPCGGAIP ++ +FD+P L+ ++T +MISP+ VDI + ++GMV RE D Sbjct: 38 KPCGGAIPPRLIRDFDIPDHLLVAKITSARMISPTGRFVDIP---IENGFVGMVDREDYD 94 Query: 432 D 434 + Sbjct: 95 E 95
>CDAN1_HUMAN (Q8IWY9) Codanin-1| Length = 1226 Score = 35.8 bits (81), Expect = 0.046 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 8/43 (18%) Frame = -2 Query: 108 PRGSRGAATSCRPPA--------APGRRKGGRWRAPWPRTRRG 4 PRGSRGA + PP AP R+GGR R P P RG Sbjct: 90 PRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERG 132
>CARX_LACPL (O08317) Carbamoyl-phosphate synthase arginine-specific small chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) (CPS-A) Length = 355 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 239 DGQLQAVRRGHPALHGVRVRPAAGPRRQEGHQDEDDFAL 355 DG ++ +R H A+ V+ P A P QE Q DDF L Sbjct: 307 DGSIEGLRLPHQAVMSVQFHPEAHPGPQEAGQFFDDFLL 345
>OV16_ONCVO (P31729) OV-16 antigen precursor| Length = 197 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +3 Query: 246 NCKPCGGAIPLCMVSEFDLPLDLVDRRVTKMKMISPSNVAVDIGRTLAP 392 NCK C + E + D+V TK+ +S +N+ V++G L P Sbjct: 24 NCKKCTPMLVDSAFKEHGIVPDVVSTAPTKLVNVSYNNLTVNLGNELTP 72
>MCHR1_MOUSE (Q8JZL2) Melanin-concentrating hormone receptor 1 (MCH receptor 1)| (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein coupled receptor 24) (Somatostatin receptor-like protein) (SLC-1) Length = 423 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 6/35 (17%) Frame = -2 Query: 105 RGSRGAATSCRPP------AAPGRRKGGRWRAPWP 19 RGSRG P APG+ GGRWR P P Sbjct: 17 RGSRGCQAVEEDPFLDCGAQAPGQGGGGRWRLPQP 51
>QOX3_BACSU (P34958) Quinol oxidase subunit 3 (EC 1.10.3.-) (Quinol oxidase| polypeptide III) (Quinol oxidase aa3-600, subunit qoxC) (Oxidase aa(3)-600 subunit 3) Length = 204 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -1 Query: 424 TSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLL 320 T L + ++CG +V M +L+G +I+ ++TLL Sbjct: 71 TFLLLISSFTCGIAVHEMRRGSLKGVVIWTIITLL 105
>ARCC_STAAW (P63556) Carbamate kinase (EC 2.7.2.2)| Length = 313 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 436 KSSSTSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLLSTRSSG 302 KS+S + MP+ +CGA + M LE EI IL + S R+ G Sbjct: 64 KSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMNSDRTVG 108
>ARCC_STAAU (Q7X2S2) Carbamate kinase (EC 2.7.2.2)| Length = 313 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 436 KSSSTSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLLSTRSSG 302 KS+S + MP+ +CGA + M LE EI IL + S R+ G Sbjct: 64 KSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMNSDRTVG 108
>ARCC_STAAS (Q6G642) Carbamate kinase (EC 2.7.2.2)| Length = 313 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 436 KSSSTSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLLSTRSSG 302 KS+S + MP+ +CGA + M LE EI IL + S R+ G Sbjct: 64 KSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMNSDRTVG 108
>ARCC_STAAR (Q6GDH0) Carbamate kinase (EC 2.7.2.2)| Length = 313 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 436 KSSSTSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLLSTRSSG 302 KS+S + MP+ +CGA + M LE EI IL + S R+ G Sbjct: 64 KSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMNSDRTVG 108
>ARCC_STAAN (P99069) Carbamate kinase (EC 2.7.2.2)| Length = 313 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 436 KSSSTSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLLSTRSSG 302 KS+S + MP+ +CGA + M LE EI IL + S R+ G Sbjct: 64 KSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMNSDRTVG 108
>ARCC_STAAM (P63555) Carbamate kinase (EC 2.7.2.2)| Length = 313 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 436 KSSSTSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLLSTRSSG 302 KS+S + MP+ +CGA + M LE EI IL + S R+ G Sbjct: 64 KSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMNSDRTVG 108
>ARCC_STAAC (Q5HCR5) Carbamate kinase (EC 2.7.2.2)| Length = 313 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 436 KSSSTSRLTMPMYSCGASVRPMSTATLEGEIIFILVTLLSTRSSG 302 KS+S + MP+ +CGA + M LE EI IL + S R+ G Sbjct: 64 KSNSDTTPAMPLDTCGAMSQGMIGYWLETEINRILTEMNSDRTVG 108
>MPA53_PHAAQ (P56166) Major pollen allergen Pha a 5.3 precursor (Pha a 5) (Clone| 29) Length = 294 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = +2 Query: 41 PPFLLPGAAGGRQEVAAPRDPRG 109 PP +LP AAGG VAA D RG Sbjct: 268 PPQVLPLAAGGAATVAAASDSRG 290
>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6| Length = 704 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 380 AADVDGDVGGRNHLHLGDPPVDEVQRQVELGHHAERDGPA 261 + D +G VG + + GDP D V+ V G E +GPA Sbjct: 239 SVDAEGRVG--DSVEAGDPAGDGVEAGVPAGDSVEAEGPA 276 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,740,009 Number of Sequences: 219361 Number of extensions: 726310 Number of successful extensions: 3385 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3383 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
