>VPS18_DROME (Q24314) Vacuolar protein sorting 18 (Protein deep orange)|
          Length = 1002

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 198 LSYLRKKAPLPGPSLVVPFLGSA----VRMIRDPTGFWDVQAARARESGAGLAADFLF 359
           L +   +A  PG +++  +L  +     RM  DPTG   + A   + + AG++ DFL+
Sbjct: 85  LRFFLPRAIPPGEAVLEKYLSGSGYKITRMFLDPTGHHIIIALVPKSATAGVSPDFLY 142

>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 398 GQLGVADEYDEPAEEEVRGEPGAGLPGP 315
           G++G+      P     +GEPG GLPGP
Sbjct: 731 GRIGLEGPSGPPGFPGPKGEPGLGLPGP 758

>COEA1_CHICK (P32018) Collagen alpha-1(XIV) chain precursor (Undulin)|
          Length = 1888

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 398  GQLGVADEYDEPAEEEVRGEPGAGLPGPR 312
            GQ G   E   P E+  RG PG G  GPR
Sbjct: 1694 GQPGRPGERGLPGEKGDRGNPGVGTQGPR 1722

>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor|
          Length = 1691

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 404  AVGQLGVADEYDEPAEEEVRGEPG-AGLPGPRR 309
            + G++G +     P E+  RG PG  G+P PRR
Sbjct: 928  STGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRR 960

>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 340 SPAPDSLARAACTSQNPVGSRIMRTALPRNGTTSDGPG 227
           +P+P +L     TSQ P G    +   P+ G    GPG
Sbjct: 434 TPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPG 471

>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 340 SPAPDSLARAACTSQNPVGSRIMRTALPRNGTTSDGPG 227
           +P+P +L     TSQ P G    +   P+ G    GPG
Sbjct: 436 TPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPG 473

>OPRD_RAT (P33533) Delta-type opioid receptor (DOR-1) (Opioid receptor A)|
          Length = 372

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = -3

Query: 322 LARAACTSQNPVGSRIMRTALPRNGTT----SDGPGRGA 218
           L RA C  Q P   R  R A  R   T    SDGPG GA
Sbjct: 332 LCRAPCGGQEPGSLRRPRQATARERVTACTPSDGPGGGA 370

>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 398 GQLGVADEYDEPAEEEVRGEPGAGLPGP 315
           G +G   +  EP     RG PG G+PGP
Sbjct: 335 GSIGSKGQKGEPGVPGSRGFPGRGIPGP 362

>SPDYC_HUMAN (Q5MJ68) Speedy protein C (Rapid inducer of G2/M progression in|
           oocytes C) (RINGO C) (hSpy/Ringo C)
          Length = 293

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 340 SPAPDSLARAACTSQNPVGSRIMRTALPRNGTTSDGPGRGAFLR 209
           SP P S++     SQ+P  S ++ T +   G +  G G G FLR
Sbjct: 10  SPCPISISYEMSDSQDPTTSPVVTTQVELGGCSRQGGGNG-FLR 52

>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1006

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -3

Query: 364 RPKRKSAASPAPDSLARAACTSQNPVGSRIMRTALPRNGTTSDGPGR 224
           +P R  + SP+  S  R+ C    P        ALPR GT S GPGR
Sbjct: 343 KPPRSPSRSPS-HSPNRSPCVPPAP------DMALPRLGTQSTGPGR 382

>PAPJ_ECOLI (P17543) Protein papJ precursor|
          Length = 193

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 364 RPKRKSAASPAPDSLARAACTSQNPVGSRIMRTALPRNGTTSDGPGRGAFL 212
           RP+  SAA+ AP  L  A C     +       A+  +G+   GPG G+ L
Sbjct: 80  RPENHSAAAGAPLMLRLAGCGDGGALQPGKRGVAMTVSGSLVTGPGSGSAL 130

>MRAW_RHOBA (Q7UFX8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 325

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
 Frame = -2

Query: 368 EPAEEEVRGEPGAGLPGPRRLHVPEPRRVADHAHGAAEERHD*R-------RAWQGGLLA 210
           + AE ++R +P  G+P  R L     + +AD  +   EER   R       RA +   + 
Sbjct: 151 DDAELDLRFDPENGVPAHRWLQQHSEKEIADAIYRFGEERFSRRIAKQIFLRARERNPVT 210

Query: 209 EVGQLLD 189
           +VG+L++
Sbjct: 211 KVGELVE 217

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -2

Query: 398 GQLGVADEYDEPAEEEVRGEPGAGLPGPRRLHVPEPRRVADHAH 267
           G++ V D+ DE  EE+  G P AG PG R LH     + ++H H
Sbjct: 98  GEIVVLDDEDE--EEDEPGSPAAGSPG-RALH-----QGSEHGH 133

>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
 Frame = -2

Query: 398 GQLGVADEYDEPAEEE------VRGEPG----AGLPGPRRLHVPEPRRVADHAHGAAEER 249
           GQLG   E  EPA+E        +GEPG    AGL GP+     +  R     +GA   R
Sbjct: 191 GQLGSKGEKGEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGERGDSGPYGAKGPR 250

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -2

Query: 398 GQLGVADEYDEPAEEEVRGEPGAGLPGPRRLHVPEPRRVADHAH 267
           G++ V D+ DE  EE+  G P AG PG R LH     + ++H H
Sbjct: 97  GEIVVLDDEDE--EEDEPGSPAAGSPG-RALH-----QGSEHGH 132

>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 398 GQLGVADEYDEPAEEEVRGEPGAGLPGP 315
           G +G   +  EP     RG PG G+PGP
Sbjct: 335 GSVGPRGQKGEPGVPGSRGFPGRGIPGP 362

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 398 GQLGVADEYDEPAEEEVRGEPGA-GLPGPR 312
           GQ G+  E   P     RG+PGA G PGP+
Sbjct: 824 GQPGLEGERGPPGSRGERGQPGATGQPGPK 853


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,751,141
Number of Sequences: 219361
Number of extensions: 615607
Number of successful extensions: 2843
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2840
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)