ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast57b03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188402.1| Oryza sativa (japonica cultivar-group), Ozsa8128 predicted mRNA Length = 1527 Score = 325 bits (164), Expect = 7e-86 Identities = 251/280 (89%) Strand = Plus / Plus Query: 135 gacctgcgcgcggcggcgccgttcttggcggcggcagtggcgctctacttcctggtcgag 194 |||||||| ||||||||||||||| ||| ||| || ||||| ||||||||||||||||| Sbjct: 25 gacctgcgggcggcggcgccgttcgtggtggccgcgctggcgttctacttcctggtcgag 84 Query: 195 cagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccgttc 254 ||||||||||||| ||||||||||| ||| ||||| |||||| |||| |||||||||||| Sbjct: 85 cagctgtcctaccaccgcaagaagggcccgctgcctggcccgccgctcgtcgtgccgttc 144 Query: 255 ctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcggcg 314 ||||||||| || || ||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 145 gtcggcagcgtcgcgcatatgatccgcgacccgaccgggttctgggacgcgcaggcggcg 204 Query: 315 cgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatcgta 374 || |||||| |||||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 205 cgcgccaggaagtccggcgcggggctcgccgccgacttcctgatcggccggttcgtcgtt 264 Query: 375 ttcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 ||||||||||||||||||||||||||||| |||||||||| Sbjct: 265 ttcatccgcgactccgagctgtcccaccgggtcttcgcca 304
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 325 bits (164), Expect = 7e-86 Identities = 251/280 (89%) Strand = Plus / Minus Query: 135 gacctgcgcgcggcggcgccgttcttggcggcggcagtggcgctctacttcctggtcgag 194 |||||||| ||||||||||||||| ||| ||| || ||||| ||||||||||||||||| Sbjct: 6077591 gacctgcgggcggcggcgccgttcgtggtggccgcgctggcgttctacttcctggtcgag 6077532 Query: 195 cagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccgttc 254 ||||||||||||| ||||||||||| ||| ||||| |||||| |||| |||||||||||| Sbjct: 6077531 cagctgtcctaccaccgcaagaagggcccgctgcctggcccgccgctcgtcgtgccgttc 6077472 Query: 255 ctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcggcg 314 ||||||||| || || ||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 6077471 gtcggcagcgtcgcgcatatgatccgcgacccgaccgggttctgggacgcgcaggcggcg 6077412 Query: 315 cgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatcgta 374 || |||||| |||||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 6077411 cgcgccaggaagtccggcgcggggctcgccgccgacttcctgatcggccggttcgtcgtt 6077352 Query: 375 ttcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 ||||||||||||||||||||||||||||| |||||||||| Sbjct: 6077351 ttcatccgcgactccgagctgtcccaccgggtcttcgcca 6077312 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Minus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccg 251 ||||||||||| |||| ||||||||||| || ||||||| || |||| ||||||||| Sbjct: 6031669 gagcagctgtcataccaccgcaagaaggggtccatgccaggggcgccgctcgtcgtgccg 6031610 Query: 252 ttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcg 311 |||||||| ||||||| || |||||||||||||| || |||||||||||||| ||| Sbjct: 6031609 ttcctcggtagcgccgcgcatttgatccgcgacccggtcggattctgggacgtgcaagcg 6031550 Query: 312 gcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatc 371 |||| || | |||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 6031549 gcgctcgctcgcaagtccggcgctgggctcgccgcggactttctcttcggccggttcacg 6031490 Query: 372 gtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || |||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 6031489 gtcttcatccgtgactcggagctgtcccaccgcgtgttcgcca 6031447 Score = 147 bits (74), Expect = 3e-32 Identities = 200/242 (82%) Strand = Plus / Minus Query: 171 gtggcgctctacttcctggtcgagcagctgtcctacctccgcaagaaggcccccctgcca 230 |||||| | ||| |||| ||||||||||||||||||| ||||||||| | |||||||| Sbjct: 6057888 gtggcgttgtacgtccttgtcgagcagctgtcctaccaccgcaagaaagggtccctgcca 6057829 Query: 231 ggcccgtcgctagtcgtgccgttcctcggcagcgccgtgcgcatgatccgcgacccgacg 290 || ||| |||| |||||||||||| ||||||||||| || |||||||||||||||||| Sbjct: 6057828 gggccgccgctcgtcgtgccgttcatcggcagcgccacgcacatgatccgcgacccgacc 6057769 Query: 291 gggttctgggacgtgcaggcggcgcgggccagggagtccggcgccgggctcgccgcggac 350 ||||||||||| ||||||| || || || || ||||||||| ||| || |||| ||| Sbjct: 6057768 gggttctgggaaatgcaggctgctcgcgctagaaagtccggcgttgggttcaccgccgac 6057709 Query: 351 ttcctcttcggccggttcatcgtattcatccgcgactccgagctgtcccaccgcgtcttc 410 ||||| |||| ||||| | |||||||||||||| ||| ||||| ||||||||||| Sbjct: 6057708 ttcctggccggcaagttcacgatcttcatccgcgactcggagttgtccaaccgcgtcttc 6057649 Query: 411 gc 412 || Sbjct: 6057648 gc 6057647 Score = 111 bits (56), Expect = 2e-21 Identities = 184/226 (81%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgc---tagtcgtg 248 |||||| |||| |||| ||||||||||| || ||||||| ||| ||| | |||||| Sbjct: 6037902 gagcagttgtcataccaccgcaagaaggggtccatgccagggccgccgctcgtcgtcgtg 6037843 Query: 249 ccgttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcag 308 || ||||||||||||| | || | || ||||||||||| || ||||||||| |||| Sbjct: 6037842 ccattcctcggcagcgtcacgcacttgttccgcgacccggtcggattctgggacttgcaa 6037783 Query: 309 gcggcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttc 368 ||| |||| || || |||||||||| |||||| |||||||||| |||||||||||| | Sbjct: 6037782 gcgacgcgtgctagcaagtccggcgctgggctcaccgcggactttctcttcggccggctt 6037723 Query: 369 atcgtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || || |||||||| ||||| |||||||||| |||||| ||||||| Sbjct: 6037722 atggtcttcatccgtgactcggagctgtcccgccgcgtgttcgcca 6037677
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 325 bits (164), Expect = 7e-86 Identities = 251/280 (89%) Strand = Plus / Minus Query: 135 gacctgcgcgcggcggcgccgttcttggcggcggcagtggcgctctacttcctggtcgag 194 |||||||| ||||||||||||||| ||| ||| || ||||| ||||||||||||||||| Sbjct: 145479 gacctgcgggcggcggcgccgttcgtggtggccgcgctggcgttctacttcctggtcgag 145420 Query: 195 cagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccgttc 254 ||||||||||||| ||||||||||| ||| ||||| |||||| |||| |||||||||||| Sbjct: 145419 cagctgtcctaccaccgcaagaagggcccgctgcctggcccgccgctcgtcgtgccgttc 145360 Query: 255 ctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcggcg 314 ||||||||| || || ||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 145359 gtcggcagcgtcgcgcatatgatccgcgacccgaccgggttctgggacgcgcaggcggcg 145300 Query: 315 cgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatcgta 374 || |||||| |||||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 145299 cgcgccaggaagtccggcgcggggctcgccgccgacttcctgatcggccggttcgtcgtt 145240 Query: 375 ttcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 ||||||||||||||||||||||||||||| |||||||||| Sbjct: 145239 ttcatccgcgactccgagctgtcccaccgggtcttcgcca 145200 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Minus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccg 251 ||||||||||| |||| ||||||||||| || ||||||| || |||| ||||||||| Sbjct: 99557 gagcagctgtcataccaccgcaagaaggggtccatgccaggggcgccgctcgtcgtgccg 99498 Query: 252 ttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcg 311 |||||||| ||||||| || |||||||||||||| || |||||||||||||| ||| Sbjct: 99497 ttcctcggtagcgccgcgcatttgatccgcgacccggtcggattctgggacgtgcaagcg 99438 Query: 312 gcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatc 371 |||| || | |||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 99437 gcgctcgctcgcaagtccggcgctgggctcgccgcggactttctcttcggccggttcacg 99378 Query: 372 gtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || |||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 99377 gtcttcatccgtgactcggagctgtcccaccgcgtgttcgcca 99335 Score = 147 bits (74), Expect = 3e-32 Identities = 200/242 (82%) Strand = Plus / Minus Query: 171 gtggcgctctacttcctggtcgagcagctgtcctacctccgcaagaaggcccccctgcca 230 |||||| | ||| |||| ||||||||||||||||||| ||||||||| | |||||||| Sbjct: 125776 gtggcgttgtacgtccttgtcgagcagctgtcctaccaccgcaagaaagggtccctgcca 125717 Query: 231 ggcccgtcgctagtcgtgccgttcctcggcagcgccgtgcgcatgatccgcgacccgacg 290 || ||| |||| |||||||||||| ||||||||||| || |||||||||||||||||| Sbjct: 125716 gggccgccgctcgtcgtgccgttcatcggcagcgccacgcacatgatccgcgacccgacc 125657 Query: 291 gggttctgggacgtgcaggcggcgcgggccagggagtccggcgccgggctcgccgcggac 350 ||||||||||| ||||||| || || || || ||||||||| ||| || |||| ||| Sbjct: 125656 gggttctgggaaatgcaggctgctcgcgctagaaagtccggcgttgggttcaccgccgac 125597 Query: 351 ttcctcttcggccggttcatcgtattcatccgcgactccgagctgtcccaccgcgtcttc 410 ||||| |||| ||||| | |||||||||||||| ||| ||||| ||||||||||| Sbjct: 125596 ttcctggccggcaagttcacgatcttcatccgcgactcggagttgtccaaccgcgtcttc 125537 Query: 411 gc 412 || Sbjct: 125536 gc 125535 Score = 111 bits (56), Expect = 2e-21 Identities = 184/226 (81%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgc---tagtcgtg 248 |||||| |||| |||| ||||||||||| || ||||||| ||| ||| | |||||| Sbjct: 105790 gagcagttgtcataccaccgcaagaaggggtccatgccagggccgccgctcgtcgtcgtg 105731 Query: 249 ccgttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcag 308 || ||||||||||||| | || | || ||||||||||| || ||||||||| |||| Sbjct: 105730 ccattcctcggcagcgtcacgcacttgttccgcgacccggtcggattctgggacttgcaa 105671 Query: 309 gcggcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttc 368 ||| |||| || || |||||||||| |||||| |||||||||| |||||||||||| | Sbjct: 105670 gcgacgcgtgctagcaagtccggcgctgggctcaccgcggactttctcttcggccggctt 105611 Query: 369 atcgtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || || |||||||| ||||| |||||||||| |||||| ||||||| Sbjct: 105610 atggtcttcatccgtgactcggagctgtcccgccgcgtgttcgcca 105565
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 325 bits (164), Expect = 7e-86 Identities = 251/280 (89%) Strand = Plus / Minus Query: 135 gacctgcgcgcggcggcgccgttcttggcggcggcagtggcgctctacttcctggtcgag 194 |||||||| ||||||||||||||| ||| ||| || ||||| ||||||||||||||||| Sbjct: 101948 gacctgcgggcggcggcgccgttcgtggtggccgcgctggcgttctacttcctggtcgag 101889 Query: 195 cagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccgttc 254 ||||||||||||| ||||||||||| ||| ||||| |||||| |||| |||||||||||| Sbjct: 101888 cagctgtcctaccaccgcaagaagggcccgctgcctggcccgccgctcgtcgtgccgttc 101829 Query: 255 ctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcggcg 314 ||||||||| || || ||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 101828 gtcggcagcgtcgcgcatatgatccgcgacccgaccgggttctgggacgcgcaggcggcg 101769 Query: 315 cgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatcgta 374 || |||||| |||||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 101768 cgcgccaggaagtccggcgcggggctcgccgccgacttcctgatcggccggttcgtcgtt 101709 Query: 375 ttcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 ||||||||||||||||||||||||||||| |||||||||| Sbjct: 101708 ttcatccgcgactccgagctgtcccaccgggtcttcgcca 101669 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Minus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccg 251 ||||||||||| |||| ||||||||||| || ||||||| || |||| ||||||||| Sbjct: 56026 gagcagctgtcataccaccgcaagaaggggtccatgccaggggcgccgctcgtcgtgccg 55967 Query: 252 ttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcg 311 |||||||| ||||||| || |||||||||||||| || |||||||||||||| ||| Sbjct: 55966 ttcctcggtagcgccgcgcatttgatccgcgacccggtcggattctgggacgtgcaagcg 55907 Query: 312 gcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatc 371 |||| || | |||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 55906 gcgctcgctcgcaagtccggcgctgggctcgccgcggactttctcttcggccggttcacg 55847 Query: 372 gtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || |||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 55846 gtcttcatccgtgactcggagctgtcccaccgcgtgttcgcca 55804 Score = 147 bits (74), Expect = 3e-32 Identities = 200/242 (82%) Strand = Plus / Minus Query: 171 gtggcgctctacttcctggtcgagcagctgtcctacctccgcaagaaggcccccctgcca 230 |||||| | ||| |||| ||||||||||||||||||| ||||||||| | |||||||| Sbjct: 82245 gtggcgttgtacgtccttgtcgagcagctgtcctaccaccgcaagaaagggtccctgcca 82186 Query: 231 ggcccgtcgctagtcgtgccgttcctcggcagcgccgtgcgcatgatccgcgacccgacg 290 || ||| |||| |||||||||||| ||||||||||| || |||||||||||||||||| Sbjct: 82185 gggccgccgctcgtcgtgccgttcatcggcagcgccacgcacatgatccgcgacccgacc 82126 Query: 291 gggttctgggacgtgcaggcggcgcgggccagggagtccggcgccgggctcgccgcggac 350 ||||||||||| ||||||| || || || || ||||||||| ||| || |||| ||| Sbjct: 82125 gggttctgggaaatgcaggctgctcgcgctagaaagtccggcgttgggttcaccgccgac 82066 Query: 351 ttcctcttcggccggttcatcgtattcatccgcgactccgagctgtcccaccgcgtcttc 410 ||||| |||| ||||| | |||||||||||||| ||| ||||| ||||||||||| Sbjct: 82065 ttcctggccggcaagttcacgatcttcatccgcgactcggagttgtccaaccgcgtcttc 82006 Query: 411 gc 412 || Sbjct: 82005 gc 82004 Score = 111 bits (56), Expect = 2e-21 Identities = 184/226 (81%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgc---tagtcgtg 248 |||||| |||| |||| ||||||||||| || ||||||| ||| ||| | |||||| Sbjct: 62259 gagcagttgtcataccaccgcaagaaggggtccatgccagggccgccgctcgtcgtcgtg 62200 Query: 249 ccgttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcag 308 || ||||||||||||| | || | || ||||||||||| || ||||||||| |||| Sbjct: 62199 ccattcctcggcagcgtcacgcacttgttccgcgacccggtcggattctgggacttgcaa 62140 Query: 309 gcggcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttc 368 ||| |||| || || |||||||||| |||||| |||||||||| |||||||||||| | Sbjct: 62139 gcgacgcgtgctagcaagtccggcgctgggctcaccgcggactttctcttcggccggctt 62080 Query: 369 atcgtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || || |||||||| ||||| |||||||||| |||||| ||||||| Sbjct: 62079 atggtcttcatccgtgactcggagctgtcccgccgcgtgttcgcca 62034
>ref|NM_188395.1| Oryza sativa (japonica cultivar-group), Ozsa8121 predicted mRNA Length = 1536 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccg 251 ||||||||||| |||| ||||||||||| || ||||||| || |||| ||||||||| Sbjct: 112 gagcagctgtcataccaccgcaagaaggggtccatgccaggggcgccgctcgtcgtgccg 171 Query: 252 ttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcg 311 |||||||| ||||||| || |||||||||||||| || |||||||||||||| ||| Sbjct: 172 ttcctcggtagcgccgcgcatttgatccgcgacccggtcggattctgggacgtgcaagcg 231 Query: 312 gcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatc 371 |||| || | |||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 232 gcgctcgctcgcaagtccggcgctgggctcgccgcggactttctcttcggccggttcacg 291 Query: 372 gtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || |||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 292 gtcttcatccgtgactcggagctgtcccaccgcgtgttcgcca 334
>dbj|AK071150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078H20, full insert sequence Length = 1810 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgctagtcgtgccg 251 ||||||||||| |||| ||||||||||| || ||||||| || |||| ||||||||| Sbjct: 166 gagcagctgtcataccaccgcaagaaggggtccatgccaggggcgccgctcgtcgtgccg 225 Query: 252 ttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcaggcg 311 |||||||| ||||||| || |||||||||||||| || |||||||||||||| ||| Sbjct: 226 ttcctcggtagcgccgcgcatttgatccgcgacccggtcggattctgggacgtgcaagcg 285 Query: 312 gcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttcatc 371 |||| || | |||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 286 gcgctcgctcgcaagtccggcgctgggctcgccgcggactttctcttcggccggttcacg 345 Query: 372 gtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || |||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 346 gtcttcatccgtgactcggagctgtcccaccgcgtgttcgcca 388
>ref|NM_188398.1| Oryza sativa (japonica cultivar-group), Ozsa8124 predicted mRNA Length = 1515 Score = 147 bits (74), Expect = 3e-32 Identities = 200/242 (82%) Strand = Plus / Plus Query: 171 gtggcgctctacttcctggtcgagcagctgtcctacctccgcaagaaggcccccctgcca 230 |||||| | ||| |||| ||||||||||||||||||| ||||||||| | |||||||| Sbjct: 67 gtggcgttgtacgtccttgtcgagcagctgtcctaccaccgcaagaaagggtccctgcca 126 Query: 231 ggcccgtcgctagtcgtgccgttcctcggcagcgccgtgcgcatgatccgcgacccgacg 290 || ||| |||| |||||||||||| ||||||||||| || |||||||||||||||||| Sbjct: 127 gggccgccgctcgtcgtgccgttcatcggcagcgccacgcacatgatccgcgacccgacc 186 Query: 291 gggttctgggacgtgcaggcggcgcgggccagggagtccggcgccgggctcgccgcggac 350 ||||||||||| ||||||| || || || || ||||||||| ||| || |||| ||| Sbjct: 187 gggttctgggaaatgcaggctgctcgcgctagaaagtccggcgttgggttcaccgccgac 246 Query: 351 ttcctcttcggccggttcatcgtattcatccgcgactccgagctgtcccaccgcgtcttc 410 ||||| |||| ||||| | |||||||||||||| ||| ||||| ||||||||||| Sbjct: 247 ttcctggccggcaagttcacgatcttcatccgcgactcggagttgtccaaccgcgtcttc 306 Query: 411 gc 412 || Sbjct: 307 gc 308
>ref|NM_188396.1| Oryza sativa (japonica cultivar-group), Ozsa8122 predicted mRNA Length = 1539 Score = 111 bits (56), Expect = 2e-21 Identities = 184/226 (81%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 192 gagcagctgtcctacctccgcaagaaggcccccctgccaggcccgtcgc---tagtcgtg 248 |||||| |||| |||| ||||||||||| || ||||||| ||| ||| | |||||| Sbjct: 91 gagcagttgtcataccaccgcaagaaggggtccatgccagggccgccgctcgtcgtcgtg 150 Query: 249 ccgttcctcggcagcgccgtgcgcatgatccgcgacccgacggggttctgggacgtgcag 308 || ||||||||||||| | || | || ||||||||||| || ||||||||| |||| Sbjct: 151 ccattcctcggcagcgtcacgcacttgttccgcgacccggtcggattctgggacttgcaa 210 Query: 309 gcggcgcgggccagggagtccggcgccgggctcgccgcggacttcctcttcggccggttc 368 ||| |||| || || |||||||||| |||||| |||||||||| |||||||||||| | Sbjct: 211 gcgacgcgtgctagcaagtccggcgctgggctcaccgcggactttctcttcggccggctt 270 Query: 369 atcgtattcatccgcgactccgagctgtcccaccgcgtcttcgcca 414 || || |||||||| ||||| |||||||||| |||||| ||||||| Sbjct: 271 atggtcttcatccgtgactcggagctgtcccgccgcgtgttcgcca 316
>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0034E03 map near 50283S, complete sequence Length = 134074 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Plus Query: 148 cggcgccgttcttggcggcggcagtgg 174 ||||| ||||||||||||||||||||| Sbjct: 115851 cggcggcgttcttggcggcggcagtgg 115877
>gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037B06 map near 50283S, complete sequence Length = 149398 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Plus Query: 148 cggcgccgttcttggcggcggcagtgg 174 ||||| ||||||||||||||||||||| Sbjct: 25179 cggcggcgttcttggcggcggcagtgg 25205
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Minus Query: 148 cggcgccgttcttggcggcggcagtgg 174 ||||| ||||||||||||||||||||| Sbjct: 14711105 cggcggcgttcttggcggcggcagtgg 14711079
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Minus Query: 148 cggcgccgttcttggcggcggcagtgg 174 ||||| ||||||||||||||||||||| Sbjct: 14791646 cggcggcgttcttggcggcggcagtgg 14791620
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 134 cgacctgcgcgcggcggcgccg 155 |||||||||||||||||||||| Sbjct: 1147427 cgacctgcgcgcggcggcgccg 1147448
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 245 cgtgccgttcctcggcagcgccgtgc 270 ||||||||||||| |||||||||||| Sbjct: 823867 cgtgccgttcctctgcagcgccgtgc 823842
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 249 ccgttcctcggcagcgccgtgc 270 |||||||||||||||||||||| Sbjct: 2717781 ccgttcctcggcagcgccgtgc 2717802
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 145 cggcggcgccgttcttggcggcggca 170 ||||||||||||||| |||||||||| Sbjct: 2827042 cggcggcgccgttctgggcggcggca 2827067
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 333 gccgggctcgccgcggacttcctct 357 ||||||||||||| ||||||||||| Sbjct: 311843 gccgggctcgccggggacttcctct 311819 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccggcgccgggctcgccgc 346 |||||||||||||||||||| Sbjct: 3148559 tccggcgccgggctcgccgc 3148540
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 ggcgccgttcttggcggcggc 169 ||||||||||||||||||||| Sbjct: 152162 ggcgccgttcttggcggcggc 152182
>ref|XM_226564.3| PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC292101), mRNA Length = 1560 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 tgggacgtgcaggcggcgcgg 317 ||||||||||||||||||||| Sbjct: 43 tgggacgtgcaggcggcgcgg 63
>ref|XM_462650.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cctcggcagcgccgtgcgca 273 |||||||||||||||||||| Sbjct: 84 cctcggcagcgccgtgcgca 65
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 cggcgccgttcttggcggcg 167 |||||||||||||||||||| Sbjct: 29174 cggcgccgttcttggcggcg 29193
>gb|AC135227.4| Oryza sativa chromosome 3 BAC OSJNBb0096H12 genomic sequence, complete sequence Length = 142538 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ttggcggcggcagtggcgct 178 |||||||||||||||||||| Sbjct: 32675 ttggcggcggcagtggcgct 32694
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ttggcggcggcagtggcgct 178 |||||||||||||||||||| Sbjct: 23007690 ttggcggcggcagtggcgct 23007709
>gb|AC140109.4| Mus musculus BAC clone RP24-156A17 from chromosome 3, complete sequence Length = 130716 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 actcgtgttctttcagtgta 28 |||||||||||||||||||| Sbjct: 103102 actcgtgttctttcagtgta 103083
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 gcggcgccgttcttggcggcggca 170 ||||||||| |||||||||||||| Sbjct: 237573 gcggcgccggtcttggcggcggca 237550
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ccggcgccgggctcgccgcg 347 |||||||||||||||||||| Sbjct: 57163 ccggcgccgggctcgccgcg 57182
>emb|AL353821.2|NC68B2 Neurospora crassa DNA linkage group V Cosmid contig 68B2 Length = 63391 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 acgataacctcatcctcagc 79 |||||||||||||||||||| Sbjct: 11575 acgataacctcatcctcagc 11556
>gb|AC018943.10| Homo sapiens, clone RP11-24D15, complete sequence Length = 152779 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ggccagggagagcttgagcc 50 |||||||||||||||||||| Sbjct: 137374 ggccagggagagcttgagcc 137355
>gb|AC169370.4| Sorghum bicolor clone SB_BBc0011I20, complete sequence Length = 135209 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ccggcgccgggctcgccgcg 347 |||||||||||||||||||| Sbjct: 95575 ccggcgccgggctcgccgcg 95556
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ccgagctgtcccaccgcgtc 407 |||||||||||||||||||| Sbjct: 4091627 ccgagctgtcccaccgcgtc 4091646
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 gcggcgccgttcttggcggcggca 170 ||||||||| |||||||||||||| Sbjct: 1288527 gcggcgccggtcttggcggcggca 1288550
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gggagggcccaatggcggag 110 |||||||||||||||||||| Sbjct: 825225 gggagggcccaatggcggag 825244
>emb|BX929852.2| Gallus gallus finished cDNA, clone ChEST334j22 Length = 1959 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ttgagccttgagctccacga 63 |||||||||||||||||||| Sbjct: 174 ttgagccttgagctccacga 193
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cctcggcagcgccgtgcgca 273 |||||||||||||||||||| Sbjct: 22290887 cctcggcagcgccgtgcgca 22290906
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cggcgccgttcttggcggcg 167 |||||||||||||||||||| Sbjct: 21904051 cggcgccgttcttggcggcg 21904032
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 cggcgccgttcttggcggcg 167 |||||||||||||||||||| Sbjct: 18983911 cggcgccgttcttggcggcg 18983930
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ttggcggcggcagtggcgct 178 |||||||||||||||||||| Sbjct: 23000718 ttggcggcggcagtggcgct 23000737
>gb|AY694127.1| Gallus gallus cosmid c12.1 chromosome 16 BR and TRIM27 genes, complete cds; tRNA-Lys and tRNA-Val genes, complete sequence; and TRIM41 and guanine nucleotide binding 12.3 genes, complete cds Length = 35248 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ttgagccttgagctccacga 63 |||||||||||||||||||| Sbjct: 33287 ttgagccttgagctccacga 33306
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gcgcggcggcgccgttcttg 161 |||||||||||||||||||| Sbjct: 1344835 gcgcggcggcgccgttcttg 1344816
>gb|AY101566.1| Sparganophilus tamesis 28S ribosomal RNA gene, partial sequence Length = 690 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 142 gcgcggcggcgccgttcttggcggcggc 169 ||||| |||||||||||| ||||||||| Sbjct: 426 gcgcgtcggcgccgttctcggcggcggc 453
>gb|AC022188.13| Homo sapiens chromosome 15, clone RP11-8P11, complete sequence Length = 140176 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ggccagggagagcttgagcc 50 |||||||||||||||||||| Sbjct: 64733 ggccagggagagcttgagcc 64752
>dbj|AK110186.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-H11, full insert sequence Length = 3771 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gccgttcctcggcagcgccg 267 |||||||||||||||||||| Sbjct: 2988 gccgttcctcggcagcgccg 3007
>dbj|AK070858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068K15, full insert sequence Length = 1917 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cctcggcagcgccgtgcgca 273 |||||||||||||||||||| Sbjct: 200 cctcggcagcgccgtgcgca 181
>ref|NM_210312.1| Eremothecium gossypii AER098Wp (AER098W), mRNA Length = 1086 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gggagggcccaatggcggag 110 |||||||||||||||||||| Sbjct: 50 gggagggcccaatggcggag 69
>emb|AL023516.3|GGBLOCUS Gallus gallus (chicken) DNA sequence from a contig of cosmids cB12, c4.5 and cBF23. Contains two Butyrophilin like genes, a gene coding for two isoforms of a B locus G (Zipper protein) like protein, genes coding for B locus Lectin like Natural Killer cell surface protein, C type Lectin, TAP Binding Protein (Tapasin) like protein, L Beta chain 1 and 2, M Alpha chain 1, B Beta chain 1 and 2, F Alpha chain 1 and 2, Transport Associated Proteins TAP1 and 2 and complement C4, a Histone H3 like gene, a Leu-tRNA gene and the RING3 kinase gene Length = 92863 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ttgagccttgagctccacga 63 |||||||||||||||||||| Sbjct: 10500 ttgagccttgagctccacga 10519
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cggcgccgttcttggcggcg 167 |||||||||||||||||||| Sbjct: 4890297 cggcgccgttcttggcggcg 4890278
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cggcgccgttcttggcggcg 167 |||||||||||||||||||| Sbjct: 21832396 cggcgccgttcttggcggcg 21832377
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138308 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cggcgccgttcttggcggcg 167 |||||||||||||||||||| Sbjct: 10179 cggcgccgttcttggcggcg 10160
>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121592 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 cggcgccgttcttggcggcg 167 |||||||||||||||||||| Sbjct: 19281 cggcgccgttcttggcggcg 19300
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cctcggcagcgccgtgcgca 273 |||||||||||||||||||| Sbjct: 41789 cctcggcagcgccgtgcgca 41808
>gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, complete sequence Length = 188353 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 actcgtgttctttcagtgta 28 |||||||||||||||||||| Sbjct: 11293 actcgtgttctttcagtgta 11274
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tccggcgccgggctcgccgc 346 |||||||||||||||||||| Sbjct: 773690 tccggcgccgggctcgccgc 773671 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,677,925 Number of Sequences: 3902068 Number of extensions: 2677925 Number of successful extensions: 58032 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56556 Number of HSP's gapped (non-prelim): 1467 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
